RLG00000034442

germin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0000346
Physical Location & Seq
Forward (+)
42796948 .. 42797508
561 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000034442

Sequence Viewer

Length: 561 bp
ATGGCAATGGCCGGAGATCCAGATATTCTTAGTGACTTCATTGCGCCCCCAAATGGAACAGTAGATGGAAACTTCTTCACATACACTGGCATGCGTGTTATCTTTCAAGAAGATGATCCTAAAAACTTCACAGTTCTGAAGGCAACCTCCGCTGAGTTCCCTGCTCTTAATGGTCAGAGTGTTTCATATGCAGTTCTTGAATTCCCTTCTGGCACTACTAACCCACCTCACACTCATCCTCGCTCTGCTGAGCTCCTCTTCCTTGTTGGCGGTTCCCTTGAAGTTGGCTTTGTCGACACAAAAAACAACCTCTTTACTCAGACTCTTCAGGTAGGTGACCTGTTTGTTTTTCCCAAGGGACTTGTGCACTTCCAATACAATGCTGACTCAGAAATCCCAGCTATAGCAATTTCTGCTTTTGGAAGTGCAAGTGCAGGAACTGTGTCAATTCCTTCCACTTTGTTCGCCACCAACATCGATGACAATGTCTTGGCTTTGTCCTTCAAGACTGACGTATCTACCATTCAAAAGCTTAAGGCTGGTCTCGCTCCCAGGCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cupin_1

Protein Analysis

187

Amino Acids

19.79

Weight (kDa)

4.61

Isoelectric Point (pI)

21.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cupin_1 PF00190 40 - 175 2.7e-31 Cupin
Cupin_2 PF07883 65 - 138 6.7e-11 Cupin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000346)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g08590 FvH4_3g08600 FvH4_3g25280 FvH4_3g25310 FvH4_3g25320 FvH4_3g25340
malus_domestica MD03G1148000.v1.1 MD11G1166800.v1.1 MD11G1166900.v1.1 MD11G1167000.v1.1 MD11G1167300.v1.1 MD11G1167400.v1.1 MD11G1169200.v1.1 MD11G1169300.v1.1
prunus_persica Prupe.2G051900_v2.0.a1 Prupe.2G052000_v2.0.a1 Prupe.6G132900_v2.0.a1 Prupe.6G133000_v2.0.a1 Prupe.6G133100_v2.0.a1 Prupe.6G133200_v2.0.a1 Prupe.6G133300_v2.0.a1 Prupe.6G133400_v2.0.a1
pyrus_communis pycom02g19060 pycom11g13850 pycom11g13920 pycom11g13930 pycom13g26450
rosa_chinensis RchiOBHm_Chr5g0046741 RchiOBHm_Chr5g0046751 RchiOBHm_Chr5g0046771 RchiOBHm_Chr5g0046781 RchiOBHm_Chr5g0046791 RchiOBHm_Chr5g0046801 RchiOBHm_Chr5g0046811 RchiOBHm_Chr5g0046821
rosa_laevigata RLG00000029833 RLG00000029836 RLG00000034439 RLG00000034440 RLG00000034441 RLG00000034442 RLG00000034446 RLG00000034447 RLG00000034448 RLG00000034449 RLG00000034450
rosa_multiflora Rmu_co8272763.1_g000001 Rmu_co8405265.1_g000001 Rmu_sc0002264.1_g000001 Rmu_sc0002264.1_g000009 Rmu_sc0002264.1_g000010 Rmu_sc0002264.1_g000013 Rmu_sc0002264.1_g000024 Rmu_sc0004673.1_g000002 Rmu_sc0006050.1_g000018 Rmu_sc0006050.1_g000030 Rmu_sc0010683.1_g000003 Rmu_sc0010683.1_g000005 Rmu_sc0015021.1_g000001 Rmu_sc0019490.1_g000007 Rmu_sc0025079.1_g000001
rosa_roxburghii Rroxscaffold_1G00034530 Rroxscaffold_1G00034540 Rroxscaffold_1G00034550 Rroxscaffold_1G00034610 Rroxscaffold_1G00034620 Rroxscaffold_1G00034630
rosa_rugosa Rorug01G0085700 Rorug01G0085700 Rorug05G0231300 Rorug05G0231300 Rorug05G0231500 Rorug05G0231900 Rorug05G0232000 Rorug05G0232100 Rorug05G0232200
rosa_samantha Rh1AG104300 Rh1BG082600 Rh5AG311400 Rh5BG319600 Rh5BG319700 Rh5BG319800 Rh5BG319900 Rh5BG320100 Rh5BG320200 Rh5BG320400 Rh5CG345600 Rh5CG345700 Rh5CG345800 Rh5CG345900 Rh5CG346100 Rh5CG346400 Rh5CG346500 Rh5CG346600 Rh5DG330400 Rh5DG330500 Rh5DG330600 Rh5DG330700 Rh5DG330800 Rh5DG330900 Rh5DG331000 Rh5DG331100
rosa_wichuraiana Rw0G015910 Rw5G029040 Rw5G029050 Rw5G029060 Rw5G029070 Rw5G029100 Rw5G029110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 294
AciI CCGC 2 cut(s) 150, 270
AclWI GGATC 2 cut(s) 11, 110
AcoI YGGCCR 1 cut(s) 9
AcsI RAATTY 1 cut(s) 200
AcuI CTGAAG 2 cut(s) 158, 311
AfiI CCNNNNNNNGG 1 cut(s) 53
AflII CTTAAG 1 cut(s) 533
AgsI TTSAA 5 cut(s) 107, 200, 281, 505, 527
AjnI CCWGG 1 cut(s) 551
AluBI AGCT 3 cut(s) 253, 401, 532
AluI AGCT 3 cut(s) 253, 401, 532
Alw21I GWGCWC 2 cut(s) 255, 369
Alw26I GTCTC 1 cut(s) 548
Alw44I GTGCAC 1 cut(s) 365
AlwI GGATC 2 cut(s) 11, 110
AlwNI CAGNNNCTG 1 cut(s) 440
AoxI GGCC 2 cut(s) 9, 554
ApaLI GTGCAC 1 cut(s) 365
ApoI RAATTY 1 cut(s) 200
AspLEI GCGC 1 cut(s) 46
AsuHPI GGTGA 1 cut(s) 347
BaeGI GKGCMC 1 cut(s) 369
BaeI ACNNNNGTAYC 2 cut(s) 498, 531
BanII GRGCYC 1 cut(s) 255
Bbv12I GWGCWC 2 cut(s) 255, 369
BccI CCATC 1 cut(s) 59
BciT130I CCWGG 1 cut(s) 553
BcoDI GTCTC 1 cut(s) 548
BfmI CTRYAG 1 cut(s) 402
BfrI CTTAAG 1 cut(s) 533
BlpI GCTNAGC 1 cut(s) 249
Bme1390I CCNGG 1 cut(s) 553
BmiI GGNNCC 1 cut(s) 274
BmrFI CCNGG 1 cut(s) 553
Bpu1102I GCTNAGC 1 cut(s) 249
Bsa29I ATCGAT 1 cut(s) 477
BsaI GGTCTC 1 cut(s) 548
BsaJI CCNNGG 2 cut(s) 354, 551
Bsc4I CCNNNNNNNGG 1 cut(s) 53
Bse1I ACTGG 1 cut(s) 91
Bse3DI GCAATG 2 cut(s) 12, 39
BseBI CCWGG 1 cut(s) 553
BseCI ATCGAT 1 cut(s) 477
BseDI CCNNGG 2 cut(s) 354, 551
BseGI GGATG 1 cut(s) 235
BseLI CCNNNNNNNGG 1 cut(s) 53
BseMI GCAATG 2 cut(s) 12, 39
BseMII CTCAG 4 cut(s) 144, 240, 332, 402
BseNI ACTGG 1 cut(s) 91
BseRI GAGGAG 1 cut(s) 245
BseSI GKGCMC 1 cut(s) 369
BseYI CCCAGC 1 cut(s) 397
BsgI GTGCAG 1 cut(s) 453
BshFI GGCC 2 cut(s) 11, 556
BshVI ATCGAT 1 cut(s) 477
BsiHKAI GWGCWC 2 cut(s) 255, 369
BsiSI CCGG 1 cut(s) 12
BslFI GGGAC 1 cut(s) 372
BslI CCNNNNNNNGG 1 cut(s) 53
BsmAI GTCTC 1 cut(s) 548
BsmFI GGGAC 1 cut(s) 372
BsnI GGCC 2 cut(s) 11, 556
Bso31I GGTCTC 1 cut(s) 548
Bsp1286I GDGCHC 2 cut(s) 255, 369
Bsp143I GATC 2 cut(s) 16, 115
Bsp1720I GCTNAGC 1 cut(s) 249
BspACI CCGC 2 cut(s) 150, 270
BspANI GGCC 2 cut(s) 11, 556
BspCNI CTCAG 4 cut(s) 145, 241, 331, 401
BspDI ATCGAT 1 cut(s) 477
BspLI GGNNCC 1 cut(s) 274
BspPI GGATC 2 cut(s) 11, 110
BspTI CTTAAG 1 cut(s) 533
BspTNI GGTCTC 1 cut(s) 548
BsrDI GCAATG 2 cut(s) 12, 39
BsrI ACTGG 1 cut(s) 91
BssECI CCNNGG 2 cut(s) 354, 551
BssMI GATC 2 cut(s) 16, 115
BssT1I CCWWGG 1 cut(s) 354
Bst2UI CCWGG 1 cut(s) 553
Bst4CI ACNGT 3 cut(s) 61, 133, 442
Bst6I CTCTTC 2 cut(s) 263, 330
BstAFI CTTAAG 1 cut(s) 533
BstAPI GCANNNNNTGC 1 cut(s) 413
BstC8I GCNNGC 1 cut(s) 92
BstDEI CTNAG 5 cut(s) 29, 153, 249, 318, 388
BstEII GGTNACC 1 cut(s) 335
BstF5I GGATG 1 cut(s) 235
BstHHI GCGC 1 cut(s) 46
BstKTI GATC 2 cut(s) 19, 118
BstMAI GTCTC 1 cut(s) 548
BstMBI GATC 2 cut(s) 16, 115
BstMWI GCNNNNNNNGC 3 cut(s) 149, 413, 545
BstNI CCWGG 1 cut(s) 553
BstNSI RCATGY 1 cut(s) 94
BstPI GGTNACC 1 cut(s) 335
BstSCI CCNGG 1 cut(s) 551
BstSFI CTRYAG 1 cut(s) 402
BstSLI GKGCMC 1 cut(s) 369
BstX2I RGATCY 1 cut(s) 16
BstYI RGATCY 1 cut(s) 16
Bsu15I ATCGAT 1 cut(s) 477
BsuRI GGCC 2 cut(s) 11, 556
BsuTUI ATCGAT 1 cut(s) 477
BtsCI GGATG 1 cut(s) 235
BtsIMutI CAGTG 1 cut(s) 84
Cac8I GCNNGC 1 cut(s) 92
CaiI CAGNNNCTG 1 cut(s) 440
CfoI GCGC 1 cut(s) 46
ClaI ATCGAT 1 cut(s) 477
CviAII CATG 2 cut(s) 91, 558
CviJI RGCY 8 cut(s) 11, 253, 288, 401, 494, 532, 539, 556
CviKI_1 RGCY 8 cut(s) 11, 253, 288, 401, 494, 532, 539, 556
DdeI CTNAG 5 cut(s) 29, 153, 249, 318, 388
DpnI GATC 2 cut(s) 18, 117
DpnII GATC 2 cut(s) 16, 115
EaeI YGGCCR 1 cut(s) 9
Eam1104I CTCTTC 2 cut(s) 263, 330
EarI CTCTTC 2 cut(s) 263, 330
Ecl136II GAGCTC 1 cut(s) 253
Eco130I CCWWGG 1 cut(s) 354
Eco24I GRGCYC 1 cut(s) 255
Eco31I GGTCTC 1 cut(s) 548
Eco53kI GAGCTC 1 cut(s) 253
Eco57I CTGAAG 2 cut(s) 158, 311
Eco91I GGTNACC 1 cut(s) 335
EcoICRI GAGCTC 1 cut(s) 253
EcoO65I GGTNACC 1 cut(s) 335
EcoRI GAATTC 1 cut(s) 200
EcoRII CCWGG 1 cut(s) 551
EcoT14I CCWWGG 1 cut(s) 354
EcoT38I GRGCYC 1 cut(s) 255
ErhI CCWWGG 1 cut(s) 354
FaeI CATG 2 cut(s) 94, 561
FaiI YATR 6 cut(s) 82, 92, 187, 189, 404, 559
FaqI GGGAC 1 cut(s) 372
FatI CATG 2 cut(s) 90, 557
FauNDI CATATG 1 cut(s) 187
FblI GTMKAC 1 cut(s) 294
FokI GGATG 1 cut(s) 222
FriOI GRGCYC 1 cut(s) 255
GlaI GCGC 1 cut(s) 45
GsaI CCCAGC 1 cut(s) 401
HaeIII GGCC 2 cut(s) 11, 556
HapII CCGG 1 cut(s) 12
HhaI GCGC 1 cut(s) 46
Hin1II CATG 2 cut(s) 94, 561
Hin6I GCGC 1 cut(s) 44
HinP1I GCGC 1 cut(s) 44
HincII GTYRAC 1 cut(s) 295
HindII GTYRAC 1 cut(s) 295
HindIII AAGCTT 1 cut(s) 530
HinfI GANTC 2 cut(s) 322, 386
HpaII CCGG 1 cut(s) 12
HphI GGTGA 1 cut(s) 347
Hpy166II GTNNAC 2 cut(s) 295, 367
Hpy188I TCNGA 4 cut(s) 138, 177, 321, 391
Hpy188III TCNNGA 4 cut(s) 20, 107, 197, 505
Hpy8I GTNNAC 2 cut(s) 295, 367
HpyAV CCTTC 4 cut(s) 133, 216, 462, 511
HpyCH4III ACNGT 3 cut(s) 61, 133, 442
HpyCH4IV ACGT 1 cut(s) 513
HpyCH4V TGCA 4 cut(s) 191, 367, 428, 434
HpyF10VI GCNNNNNNNGC 3 cut(s) 149, 413, 545
HpyF3I CTNAG 5 cut(s) 29, 153, 249, 318, 388
HpySE526I ACGT 1 cut(s) 513
Hsp92II CATG 2 cut(s) 94, 561
HspAI GCGC 1 cut(s) 44
Kzo9I GATC 2 cut(s) 16, 115
LmnI GCTCC 2 cut(s) 258, 553
MaeII ACGT 1 cut(s) 513
MaeIII GTNAC 2 cut(s) 32, 335
MalI GATC 2 cut(s) 18, 117
MboI GATC 2 cut(s) 16, 115
MboII GAAGA 4 cut(s) 67, 122, 250, 317
MflI RGATCY 1 cut(s) 16
MhlI GDGCHC 2 cut(s) 255, 369
MluCI AATT 3 cut(s) 200, 408, 447
MlyI GAGTC 2 cut(s) 316, 380
MnlI CCTC 5 cut(s) 157, 237, 249, 266, 320
MseI TTAA 2 cut(s) 168, 534
MslI CAYNNNNRTG 1 cut(s) 89
MspA1I CMGCKG 1 cut(s) 152
MspCI CTTAAG 1 cut(s) 533
MspI CCGG 1 cut(s) 12
MspR9I CCNGG 1 cut(s) 553
MvaI CCWGG 1 cut(s) 553
MwoI GCNNNNNNNGC 3 cut(s) 149, 413, 545
NdeI CATATG 1 cut(s) 187
NdeII GATC 2 cut(s) 16, 115
NlaIII CATG 2 cut(s) 94, 561
NlaIV GGNNCC 1 cut(s) 274
NmuCI GTSAC 2 cut(s) 32, 335
NspI RCATGY 1 cut(s) 94
PaeI GCATGC 1 cut(s) 94
PflFI GACNNNGTC 1 cut(s) 485
PleI GAGTC 2 cut(s) 316, 380
PpsI GAGTC 2 cut(s) 316, 380
Psp124BI GAGCTC 1 cut(s) 255
Psp6I CCWGG 1 cut(s) 551
PspEI GGTNACC 1 cut(s) 335
PspFI CCCAGC 1 cut(s) 397
PspGI CCWGG 1 cut(s) 551
PspN4I GGNNCC 1 cut(s) 274
PstNI CAGNNNCTG 1 cut(s) 440
PsuI RGATCY 1 cut(s) 16
PsyI GACNNNGTC 1 cut(s) 485
RseI CAYNNNNRTG 1 cut(s) 89
SacI GAGCTC 1 cut(s) 255
SalI GTCGAC 1 cut(s) 293
SaqAI TTAA 2 cut(s) 168, 534
Sau3AI GATC 2 cut(s) 16, 115
SchI GAGTC 2 cut(s) 316, 380
ScrFI CCNGG 1 cut(s) 553
SduI GDGCHC 2 cut(s) 255, 369
SfcI CTRYAG 1 cut(s) 402
SmiMI CAYNNNNRTG 1 cut(s) 89
SmlI CTYRAG 1 cut(s) 533
SmoI CTYRAG 1 cut(s) 533
SphI GCATGC 1 cut(s) 94
Sse9I AATT 3 cut(s) 200, 408, 447
SsiI CCGC 2 cut(s) 150, 270
SstI GAGCTC 1 cut(s) 255
StyD4I CCNGG 1 cut(s) 551
StyI CCWWGG 1 cut(s) 354
TaaI ACNGT 3 cut(s) 61, 133, 442
TaiI ACGT 1 cut(s) 516
TaqI TCGA 2 cut(s) 294, 477
TasI AATT 3 cut(s) 200, 408, 447
Tru1I TTAA 2 cut(s) 168, 534
Tru9I TTAA 2 cut(s) 168, 534
TscAI CASTG 1 cut(s) 91
TseFI GTSAC 2 cut(s) 32, 335
Tsp45I GTSAC 2 cut(s) 32, 335
TspDTI ATGAA 2 cut(s) 28, 174
TspRI CASTG 1 cut(s) 91
Tth111I GACNNNGTC 1 cut(s) 485
Vha464I CTTAAG 1 cut(s) 533
VneI GTGCAC 1 cut(s) 365
XapI RAATTY 1 cut(s) 200
XceI RCATGY 1 cut(s) 94
XmiI GTMKAC 1 cut(s) 294
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.