RLG00000029833

Cupin domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0000346
Physical Location & Seq
Forward (+)
49980549 .. 49981601
1053 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000029833

Sequence Viewer

Length: 528 bp
ATGGCCTTGAATTACTTCCCACTACTGATATTAGTACTTGCATTGGCCACCTCCAAAAGGAGCTTAGCAGGTGATCCTGACATTCTTTACGACTTTATAGTGCCACAAAATAACACCACGGTTAATGGGACCTTCTTTACCTACACTGGACTGCGTGGTGTGTTCAATGTTCCTGCAAATGGTGGACTTAACCCTCCTCACACGCACCCACGCTTGGCTGAACTTTTGTTCCTTTTTGCTGGTTCCTTGGAAGTAGGTTTTGTCGACACAAAAAACGTTCTGTATACTCAAAAGCTTCAAGTTGGTGACATTTTTGTGTTTCCAAAGGGACTAGTCCACTATCAGTATTACTCACAGCCAAACATGCCTTCTTTTGCCGTTTCAGCATTTGGAAGTGCAAATGCTGGAACAGTTTCAGTGCCATTGTCAGTCTTTGATACAGAAATTGATGATGACATCCTCGCTAAATCATTTAAGACTGATGTTGATACCATTCGGAAGAGCAAGGTTGGCCTCACGTCTAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cupin_1

Protein Analysis

176

Amino Acids

19.08

Weight (kDa)

6.26

Isoelectric Point (pI)

27.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cupin_2 PF07883 55 - 114 3.9e-07 Cupin domain
Cupin_1 PF00190 56 - 164 1.9e-25 Cupin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000346)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g08590 FvH4_3g08600 FvH4_3g25280 FvH4_3g25310 FvH4_3g25320 FvH4_3g25340
malus_domestica MD03G1148000.v1.1 MD11G1166800.v1.1 MD11G1166900.v1.1 MD11G1167000.v1.1 MD11G1167300.v1.1 MD11G1167400.v1.1 MD11G1169200.v1.1 MD11G1169300.v1.1
prunus_persica Prupe.2G051900_v2.0.a1 Prupe.2G052000_v2.0.a1 Prupe.6G132900_v2.0.a1 Prupe.6G133000_v2.0.a1 Prupe.6G133100_v2.0.a1 Prupe.6G133200_v2.0.a1 Prupe.6G133300_v2.0.a1 Prupe.6G133400_v2.0.a1
pyrus_communis pycom02g19060 pycom11g13850 pycom11g13920 pycom11g13930 pycom13g26450
rosa_chinensis RchiOBHm_Chr5g0046741 RchiOBHm_Chr5g0046751 RchiOBHm_Chr5g0046771 RchiOBHm_Chr5g0046781 RchiOBHm_Chr5g0046791 RchiOBHm_Chr5g0046801 RchiOBHm_Chr5g0046811 RchiOBHm_Chr5g0046821
rosa_laevigata RLG00000029833 RLG00000029836 RLG00000034439 RLG00000034440 RLG00000034441 RLG00000034442 RLG00000034446 RLG00000034447 RLG00000034448 RLG00000034449 RLG00000034450
rosa_multiflora Rmu_co8272763.1_g000001 Rmu_co8405265.1_g000001 Rmu_sc0002264.1_g000001 Rmu_sc0002264.1_g000009 Rmu_sc0002264.1_g000010 Rmu_sc0002264.1_g000013 Rmu_sc0002264.1_g000024 Rmu_sc0004673.1_g000002 Rmu_sc0006050.1_g000018 Rmu_sc0006050.1_g000030 Rmu_sc0010683.1_g000003 Rmu_sc0010683.1_g000005 Rmu_sc0015021.1_g000001 Rmu_sc0019490.1_g000007 Rmu_sc0025079.1_g000001
rosa_roxburghii Rroxscaffold_1G00034530 Rroxscaffold_1G00034540 Rroxscaffold_1G00034550 Rroxscaffold_1G00034610 Rroxscaffold_1G00034620 Rroxscaffold_1G00034630
rosa_rugosa Rorug01G0085700 Rorug01G0085700 Rorug05G0231300 Rorug05G0231300 Rorug05G0231500 Rorug05G0231900 Rorug05G0232000 Rorug05G0232100 Rorug05G0232200
rosa_samantha Rh1AG104300 Rh1BG082600 Rh5AG311400 Rh5BG319600 Rh5BG319700 Rh5BG319800 Rh5BG319900 Rh5BG320100 Rh5BG320200 Rh5BG320400 Rh5CG345600 Rh5CG345700 Rh5CG345800 Rh5CG345900 Rh5CG346100 Rh5CG346400 Rh5CG346500 Rh5CG346600 Rh5DG330400 Rh5DG330500 Rh5DG330600 Rh5DG330700 Rh5DG330800 Rh5DG330900 Rh5DG331000 Rh5DG331100
rosa_wichuraiana Rw0G015910 Rw5G029040 Rw5G029050 Rw5G029060 Rw5G029070 Rw5G029100 Rw5G029110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 59
Acc36I ACCTGC 1 cut(s) 59
AccI GTMKAC 2 cut(s) 264, 284
AclI AACGTT 1 cut(s) 276
AclWI GGATC 1 cut(s) 68
AcoI YGGCCR 1 cut(s) 45
AfaI GTAC 1 cut(s) 36
AfiI CCNNNNNNNGG 3 cut(s) 57, 179, 214
AgsI TTSAA 3 cut(s) 10, 166, 299
AhlI ACTAGT 1 cut(s) 331
AjiI CACGTC 1 cut(s) 519
AjuI GAANNNNNNNTTGG 2 cut(s) 352, 384
AloI GAACNNNNNNTCC 2 cut(s) 213, 245
AluBI AGCT 2 cut(s) 63, 295
AluI AGCT 2 cut(s) 63, 295
AlwI GGATC 1 cut(s) 68
AoxI GGCC 3 cut(s) 3, 45, 511
Asp700I GAANNNNTTC 2 cut(s) 14, 412
AspS9I GGNCC 1 cut(s) 129
AsuHPI GGTGA 2 cut(s) 83, 317
AvaII GGWCC 1 cut(s) 129
BalI TGGCCA 1 cut(s) 47
BceAI ACGGC 1 cut(s) 362
BcuI ACTAGT 1 cut(s) 331
BfaI CTAG 1 cut(s) 332
BfuAI ACCTGC 1 cut(s) 59
BlpI GCTNAGC 1 cut(s) 64
BmcAI AGTACT 1 cut(s) 36
Bme18I GGWCC 1 cut(s) 129
BmgBI CACGTC 1 cut(s) 519
BmgT120I GGNCC 1 cut(s) 129
BmiI GGNNCC 2 cut(s) 130, 244
Bpu1102I GCTNAGC 1 cut(s) 64
BsaJI CCNNGG 2 cut(s) 117, 246
Bsc4I CCNNNNNNNGG 3 cut(s) 57, 179, 214
Bse1I ACTGG 1 cut(s) 151
BseDI CCNNGG 2 cut(s) 117, 246
BseGI GGATG 1 cut(s) 456
BseLI CCNNNNNNNGG 3 cut(s) 57, 179, 214
BseNI ACTGG 1 cut(s) 151
BseRI GAGGAG 1 cut(s) 186
BshFI GGCC 3 cut(s) 5, 47, 513
BslFI GGGAC 2 cut(s) 142, 342
BslI CCNNNNNNNGG 3 cut(s) 57, 179, 214
BsmFI GGGAC 2 cut(s) 142, 342
BsnI GGCC 3 cut(s) 5, 47, 513
Bsp143I GATC 1 cut(s) 73
Bsp1720I GCTNAGC 1 cut(s) 64
BspANI GGCC 3 cut(s) 5, 47, 513
BspLI GGNNCC 2 cut(s) 130, 244
BspMI ACCTGC 1 cut(s) 59
BspPI GGATC 1 cut(s) 68
BspQI GCTCTTC 1 cut(s) 494
BsrI ACTGG 1 cut(s) 151
BssECI CCNNGG 2 cut(s) 117, 246
BssMI GATC 1 cut(s) 73
BssNAI GTATAC 1 cut(s) 285
BssT1I CCWWGG 1 cut(s) 246
Bst1107I GTATAC 1 cut(s) 285
Bst4CI ACNGT 2 cut(s) 121, 412
Bst6I CTCTTC 1 cut(s) 494
BstDEI CTNAG 1 cut(s) 64
BstDSI CCRYGG 1 cut(s) 117
BstENI CCTNNNNNAGG 1 cut(s) 55
BstF5I GGATG 1 cut(s) 456
BstKTI GATC 1 cut(s) 76
BstMBI GATC 1 cut(s) 73
BstMWI GCNNNNNNNGC 3 cut(s) 364, 383, 510
BstNSI RCATGY 1 cut(s) 367
BstZ17I GTATAC 1 cut(s) 285
BsuRI GGCC 3 cut(s) 5, 47, 513
BtgI CCRYGG 1 cut(s) 117
BtrI CACGTC 1 cut(s) 519
BtsCI GGATG 1 cut(s) 456
BtsIMutI CAGTG 2 cut(s) 144, 423
BveI ACCTGC 1 cut(s) 59
Cfr13I GGNCC 1 cut(s) 129
Csp6I GTAC 1 cut(s) 35
CviAII CATG 1 cut(s) 364
CviJI RGCY 7 cut(s) 5, 47, 63, 218, 295, 358, 513
CviKI_1 RGCY 7 cut(s) 5, 47, 63, 218, 295, 358, 513
CviQI GTAC 1 cut(s) 35
DdeI CTNAG 1 cut(s) 64
DpnI GATC 1 cut(s) 75
DpnII GATC 1 cut(s) 73
EaeI YGGCCR 1 cut(s) 45
Eam1104I CTCTTC 1 cut(s) 494
EarI CTCTTC 1 cut(s) 494
Eco130I CCWWGG 1 cut(s) 246
Eco47I GGWCC 1 cut(s) 129
EcoNI CCTNNNNNAGG 1 cut(s) 55
EcoO109I RGGNCCY 1 cut(s) 129
EcoT14I CCWWGG 1 cut(s) 246
ErhI CCWWGG 1 cut(s) 246
FaeI CATG 1 cut(s) 367
FaiI YATR 3 cut(s) 98, 285, 365
FaqI GGGAC 2 cut(s) 142, 342
FatI CATG 1 cut(s) 363
FblI GTMKAC 2 cut(s) 264, 284
FokI GGATG 1 cut(s) 443
FspBI CTAG 1 cut(s) 332
HaeIII GGCC 3 cut(s) 5, 47, 513
Hin1II CATG 1 cut(s) 367
HincII GTYRAC 1 cut(s) 265
HindII GTYRAC 1 cut(s) 265
HindIII AAGCTT 1 cut(s) 293
HphI GGTGA 2 cut(s) 83, 317
Hpy166II GTNNAC 4 cut(s) 185, 265, 285, 337
Hpy188I TCNGA 1 cut(s) 498
Hpy188III TCNNGA 1 cut(s) 77
Hpy8I GTNNAC 4 cut(s) 185, 265, 285, 337
HpyAV CCTTC 2 cut(s) 142, 378
HpyCH4III ACNGT 2 cut(s) 121, 412
HpyCH4IV ACGT 2 cut(s) 276, 518
HpyCH4V TGCA 3 cut(s) 41, 176, 398
HpyF10VI GCNNNNNNNGC 3 cut(s) 364, 383, 510
HpyF3I CTNAG 1 cut(s) 64
HpySE526I ACGT 2 cut(s) 276, 518
Hsp92II CATG 1 cut(s) 367
Kzo9I GATC 1 cut(s) 73
LguI GCTCTTC 1 cut(s) 494
LmnI GCTCC 1 cut(s) 60
LpnPI CCDG 6 cut(s) 54, 90, 132, 186, 225, 390
MaeI CTAG 1 cut(s) 332
MaeII ACGT 2 cut(s) 276, 518
MaeIII GTNAC 1 cut(s) 305
MalI GATC 1 cut(s) 75
MboI GATC 1 cut(s) 73
MboII GAAGA 1 cut(s) 511
MlsI TGGCCA 1 cut(s) 47
MluCI AATT 2 cut(s) 10, 444
MluNI TGGCCA 1 cut(s) 47
MnlI CCTC 5 cut(s) 61, 204, 207, 470, 524
Mox20I TGGCCA 1 cut(s) 47
MroXI GAANNNNTTC 2 cut(s) 14, 412
MscI TGGCCA 1 cut(s) 47
MseI TTAA 3 cut(s) 123, 189, 474
MslI CAYNNNNRTG 1 cut(s) 314
Msp20I TGGCCA 1 cut(s) 47
MwoI GCNNNNNNNGC 3 cut(s) 364, 383, 510
NdeII GATC 1 cut(s) 73
NlaIII CATG 1 cut(s) 367
NlaIV GGNNCC 2 cut(s) 130, 244
NmuCI GTSAC 1 cut(s) 305
NspI RCATGY 1 cut(s) 367
PaqCI CACCTGC 1 cut(s) 59
PciSI GCTCTTC 1 cut(s) 494
PdmI GAANNNNTTC 2 cut(s) 14, 412
PpuMI RGGWCCY 1 cut(s) 129
Psp1406I AACGTT 1 cut(s) 276
Psp5II RGGWCCY 1 cut(s) 129
PspN4I GGNNCC 2 cut(s) 130, 244
PspPI GGNCC 1 cut(s) 129
PspPPI RGGWCCY 1 cut(s) 129
RsaI GTAC 1 cut(s) 36
RsaNI GTAC 1 cut(s) 35
RseI CAYNNNNRTG 1 cut(s) 314
SalI GTCGAC 1 cut(s) 263
SapI GCTCTTC 1 cut(s) 494
SaqAI TTAA 3 cut(s) 123, 189, 474
Sau3AI GATC 1 cut(s) 73
Sau96I GGNCC 1 cut(s) 129
ScaI AGTACT 1 cut(s) 36
SinI GGWCC 1 cut(s) 129
SmiMI CAYNNNNRTG 1 cut(s) 314
SpeI ACTAGT 1 cut(s) 331
Sse9I AATT 2 cut(s) 10, 444
SspMI CTAG 1 cut(s) 332
StyI CCWWGG 1 cut(s) 246
TaaI ACNGT 2 cut(s) 121, 412
TaiI ACGT 2 cut(s) 279, 521
TaqI TCGA 1 cut(s) 264
TasI AATT 2 cut(s) 10, 444
TatI WGTACW 1 cut(s) 34
Tru1I TTAA 3 cut(s) 123, 189, 474
Tru9I TTAA 3 cut(s) 123, 189, 474
TscAI CASTG 2 cut(s) 151, 423
TseFI GTSAC 1 cut(s) 305
Tsp45I GTSAC 1 cut(s) 305
TspRI CASTG 2 cut(s) 151, 423
VpaK11BI GGWCC 1 cut(s) 129
XagI CCTNNNNNAGG 1 cut(s) 55
XceI RCATGY 1 cut(s) 367
XmiI GTMKAC 2 cut(s) 264, 284
XmnI GAANNNNTTC 2 cut(s) 14, 412
XspI CTAG 1 cut(s) 332
ZrmI AGTACT 1 cut(s) 36
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.