MD11G1167000.v1.1

germin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0000346
Physical Location & Seq
Forward (+)
17681479 .. 17681904
426 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1167000.v1.1.491

Sequence Viewer

Length: 426 bp
ATGAAGGCATCCTTGGCTGAATTCCCTGCTCTTAATGGGCAGAGTGTTTCGTATGCCGTCCTTCAGTTCCCAAATGGCACTACCAACCCACCACACACTCATCCTCGCTCTGCTGAGCTACTTTTCCTTGTTGGTGGTACCCTTGAAGTTGGTTTCGTTGACACCAAAAACAACCTCTTTACGCAGACGCTTCAGACAGGTGATCTGTTTGTGTTTCCCAAGGGACTTGCGCACTTCCAGTACAATGCTGATGCAGAAAACCCAGCCATAGCAATTTCTGCATTTGGAAGTGCAAATGCAGGAACTGTATCAATCCCCTCCACCTTGTTCGCCACCGGCATCGACGACAATGTGTTGGCTATCTCCTTCAAGACTGATGTTGGCACCATTCAAAAGCTCAAGGCTGGTCTTGCTCCCAAGCCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cupin_1

Protein Analysis

142

Amino Acids

14.79

Weight (kDa)

5.81

Isoelectric Point (pI)

14.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cupin_1 PF00190 6 - 127 3e-31 Cupin
Cupin_2 PF07883 21 - 93 2.4e-11 Cupin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000346)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g08590 FvH4_3g08600 FvH4_3g25280 FvH4_3g25310 FvH4_3g25320 FvH4_3g25340
malus_domestica MD03G1148000.v1.1 MD11G1166800.v1.1 MD11G1166900.v1.1 MD11G1167000.v1.1 MD11G1167300.v1.1 MD11G1167400.v1.1 MD11G1169200.v1.1 MD11G1169300.v1.1
prunus_persica Prupe.2G051900_v2.0.a1 Prupe.2G052000_v2.0.a1 Prupe.6G132900_v2.0.a1 Prupe.6G133000_v2.0.a1 Prupe.6G133100_v2.0.a1 Prupe.6G133200_v2.0.a1 Prupe.6G133300_v2.0.a1 Prupe.6G133400_v2.0.a1
pyrus_communis pycom02g19060 pycom11g13850 pycom11g13920 pycom11g13930 pycom13g26450
rosa_chinensis RchiOBHm_Chr5g0046741 RchiOBHm_Chr5g0046751 RchiOBHm_Chr5g0046771 RchiOBHm_Chr5g0046781 RchiOBHm_Chr5g0046791 RchiOBHm_Chr5g0046801 RchiOBHm_Chr5g0046811 RchiOBHm_Chr5g0046821
rosa_laevigata RLG00000029833 RLG00000029836 RLG00000034439 RLG00000034440 RLG00000034441 RLG00000034442 RLG00000034446 RLG00000034447 RLG00000034448 RLG00000034449 RLG00000034450
rosa_multiflora Rmu_co8272763.1_g000001 Rmu_co8405265.1_g000001 Rmu_sc0002264.1_g000001 Rmu_sc0002264.1_g000009 Rmu_sc0002264.1_g000010 Rmu_sc0002264.1_g000013 Rmu_sc0002264.1_g000024 Rmu_sc0004673.1_g000002 Rmu_sc0006050.1_g000018 Rmu_sc0006050.1_g000030 Rmu_sc0010683.1_g000003 Rmu_sc0010683.1_g000005 Rmu_sc0015021.1_g000001 Rmu_sc0019490.1_g000007 Rmu_sc0025079.1_g000001
rosa_roxburghii Rroxscaffold_1G00034530 Rroxscaffold_1G00034540 Rroxscaffold_1G00034550 Rroxscaffold_1G00034610 Rroxscaffold_1G00034620 Rroxscaffold_1G00034630
rosa_rugosa Rorug01G0085700 Rorug01G0085700 Rorug05G0231300 Rorug05G0231300 Rorug05G0231500 Rorug05G0231900 Rorug05G0232000 Rorug05G0232100 Rorug05G0232200
rosa_samantha Rh1AG104300 Rh1BG082600 Rh5AG311400 Rh5BG319600 Rh5BG319700 Rh5BG319800 Rh5BG319900 Rh5BG320100 Rh5BG320200 Rh5BG320400 Rh5CG345600 Rh5CG345700 Rh5CG345800 Rh5CG345900 Rh5CG346100 Rh5CG346400 Rh5CG346500 Rh5CG346600 Rh5DG330400 Rh5DG330500 Rh5DG330600 Rh5DG330700 Rh5DG330800 Rh5DG330900 Rh5DG331000 Rh5DG331100
rosa_wichuraiana Rw0G015910 Rw5G029040 Rw5G029050 Rw5G029060 Rw5G029070 Rw5G029100 Rw5G029110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 231
Acc65I GGTACC 1 cut(s) 137
AccB1I GGYRCC 2 cut(s) 137, 383
AcsI RAATTY 1 cut(s) 20
AcuI CTGAAG 2 cut(s) 47, 176
AfaI GTAC 2 cut(s) 139, 242
AgsI TTSAA 3 cut(s) 146, 370, 392
AjuI GAANNNNNNNTTGG 1 cut(s) 28
AluBI AGCT 2 cut(s) 118, 397
AluI AGCT 2 cut(s) 118, 397
AlwNI CAGNNNCTG 1 cut(s) 305
ApoI RAATTY 1 cut(s) 20
Asp718I GGTACC 1 cut(s) 137
AspLEI GCGC 1 cut(s) 232
AsuHPI GGTGA 1 cut(s) 212
BanI GGYRCC 2 cut(s) 137, 383
BceAI ACGGC 2 cut(s) 41, 406
BlpI GCTNAGC 1 cut(s) 114
BmiI GGNNCC 2 cut(s) 139, 385
BmsI GCATC 3 cut(s) 17, 241, 348
Bpu1102I GCTNAGC 1 cut(s) 114
BpuEI CTTGAG 1 cut(s) 383
BsaJI CCNNGG 2 cut(s) 12, 219
Bse118I RCCGGY 1 cut(s) 335
Bse1I ACTGG 1 cut(s) 238
BseDI CCNNGG 2 cut(s) 12, 219
BseGI GGATG 2 cut(s) 8, 100
BseMII CTCAG 1 cut(s) 105
BseNI ACTGG 1 cut(s) 238
BseYI CCCAGC 1 cut(s) 262
BshNI GGYRCC 2 cut(s) 137, 383
BsiSI CCGG 1 cut(s) 336
BslFI GGGAC 1 cut(s) 237
BsmFI GGGAC 1 cut(s) 237
Bsp143I GATC 1 cut(s) 202
Bsp1720I GCTNAGC 1 cut(s) 114
BspCNI CTCAG 1 cut(s) 106
BspLI GGNNCC 2 cut(s) 139, 385
BspT107I GGYRCC 2 cut(s) 137, 383
BsrFI RCCGGY 1 cut(s) 335
BsrI ACTGG 1 cut(s) 238
BssAI RCCGGY 1 cut(s) 335
BssECI CCNNGG 2 cut(s) 12, 219
BssMI GATC 1 cut(s) 202
BssT1I CCWWGG 2 cut(s) 12, 219
Bst4CI ACNGT 1 cut(s) 307
BstAPI GCANNNNNTGC 1 cut(s) 278
BstDEI CTNAG 1 cut(s) 114
BstF5I GGATG 2 cut(s) 8, 100
BstHHI GCGC 1 cut(s) 232
BstKTI GATC 1 cut(s) 205
BstMBI GATC 1 cut(s) 202
BstMWI GCNNNNNNNGC 3 cut(s) 14, 278, 410
BtsCI GGATG 2 cut(s) 8, 100
CaiI CAGNNNCTG 1 cut(s) 305
CfoI GCGC 1 cut(s) 232
Cfr10I RCCGGY 1 cut(s) 335
CseI GACGC 1 cut(s) 196
Csp6I GTAC 2 cut(s) 138, 241
CviJI RGCY 7 cut(s) 17, 118, 266, 359, 397, 404, 421
CviKI_1 RGCY 7 cut(s) 17, 118, 266, 359, 397, 404, 421
CviQI GTAC 2 cut(s) 138, 241
DdeI CTNAG 1 cut(s) 114
DpnI GATC 1 cut(s) 204
DpnII GATC 1 cut(s) 202
Eco130I CCWWGG 2 cut(s) 12, 219
Eco57I CTGAAG 2 cut(s) 47, 176
EcoRI GAATTC 1 cut(s) 20
EcoT14I CCWWGG 2 cut(s) 12, 219
ErhI CCWWGG 2 cut(s) 12, 219
FaiI YATR 2 cut(s) 54, 269
FalI AAGNNNNNCTT 1 cut(s) 28
FaqI GGGAC 1 cut(s) 237
FokI GGATG 1 cut(s) 87
FspI TGCGCA 1 cut(s) 231
GlaI GCGC 1 cut(s) 231
GsaI CCCAGC 1 cut(s) 266
HapII CCGG 1 cut(s) 336
HgaI GACGC 1 cut(s) 196
HhaI GCGC 1 cut(s) 232
Hin6I GCGC 1 cut(s) 230
HinP1I GCGC 1 cut(s) 230
HincII GTYRAC 1 cut(s) 160
HindII GTYRAC 1 cut(s) 160
HpaII CCGG 1 cut(s) 336
HphI GGTGA 1 cut(s) 212
Hpy166II GTNNAC 1 cut(s) 160
Hpy188I TCNGA 1 cut(s) 195
Hpy188III TCNNGA 1 cut(s) 370
Hpy8I GTNNAC 1 cut(s) 160
Hpy99I CGWCG 1 cut(s) 347
HpyAV CCTTC 2 cut(s) 71, 376
HpyCH4III ACNGT 1 cut(s) 307
HpyCH4V TGCA 4 cut(s) 254, 281, 293, 299
HpyF10VI GCNNNNNNNGC 3 cut(s) 14, 278, 410
HpyF3I CTNAG 1 cut(s) 114
HspAI GCGC 1 cut(s) 230
KpnI GGTACC 1 cut(s) 141
Kzo9I GATC 1 cut(s) 202
LmnI GCTCC 1 cut(s) 418
LpnPI CCDG 7 cut(s) 39, 183, 251, 276, 285, 349, 390
LweI GCATC 3 cut(s) 17, 241, 348
MalI GATC 1 cut(s) 204
MboI GATC 1 cut(s) 202
MluCI AATT 2 cut(s) 20, 273
MnlI CCTC 3 cut(s) 114, 185, 328
MseI TTAA 1 cut(s) 33
MspI CCGG 1 cut(s) 336
MwoI GCNNNNNNNGC 3 cut(s) 14, 278, 410
NdeII GATC 1 cut(s) 202
NlaIV GGNNCC 2 cut(s) 139, 385
NsbI TGCGCA 1 cut(s) 231
PspFI CCCAGC 1 cut(s) 262
PspN4I GGNNCC 2 cut(s) 139, 385
PstNI CAGNNNCTG 1 cut(s) 305
RsaI GTAC 2 cut(s) 139, 242
RsaNI GTAC 2 cut(s) 138, 241
SaqAI TTAA 1 cut(s) 33
Sau3AI GATC 1 cut(s) 202
SetI ASST 5 cut(s) 120, 177, 202, 326, 399
SfaNI GCATC 3 cut(s) 17, 241, 348
SmlI CTYRAG 1 cut(s) 398
SmoI CTYRAG 1 cut(s) 398
Sse9I AATT 2 cut(s) 20, 273
StyI CCWWGG 2 cut(s) 12, 219
TaaI ACNGT 1 cut(s) 307
TaqI TCGA 1 cut(s) 342
TasI AATT 2 cut(s) 20, 273
TatI WGTACW 1 cut(s) 240
Tru1I TTAA 1 cut(s) 33
Tru9I TTAA 1 cut(s) 33
TspDTI ATGAA 1 cut(s) 17
XapI RAATTY 1 cut(s) 20
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.