RLG00000034441

germin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0000346
Physical Location & Seq
Forward (+)
42790150 .. 42790710
561 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000034441

Sequence Viewer

Length: 561 bp
ATGGCAATGGCCGGAGATCCAGACATTCTTAGTGACTTCATAGCCCCTCCAAATGGAACAGTAGACGGAAACTTCTTCACATACACTGGCATGCGTGTTCTTGTTGGAGGAGACGAGCCCAAAAACTTCACAGTACTGAAGGCAACCTCGGCAGAGTTCCCTGCTCTTAATGGCCAGAGTGTTTCATATGCCGTCCTTGAATTCCCAGCTGGCACTACTAACCCACCACACACTCATCCTCGCTCTGCTGAGCTCCTCTTCCTTATTGACGGTACCCTTGAAGTTGGCTTTGTCGACACAAAGAACAACCTCTTTACTCAGACTCTTCAGACAGGCGACCTGTTTGTGTTTCCCAAGGGCCTTGTTCACTACCAGTACAATGCCGATTCACAAAACTCGGCTCTGGCAATTTCTGCCTTTGGAAGTGCTAGTGCAGGAACTGTGTCAATTCCCGCCACTTTGTTCACCACCAACATTGATGACAGTGTCTTGGCTTTGTCCTTTAAGACTGATGTAGCTACCATTCAAAAGCTTAAGGCTGGTCTCGCTCCCAAGCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cupin_1

Protein Analysis

187

Amino Acids

19.63

Weight (kDa)

4.69

Isoelectric Point (pI)

21.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cupin_1 PF00190 39 - 175 3.9e-32 Cupin
Cupin_2 PF07883 65 - 133 1.2e-12 Cupin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000346)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g08590 FvH4_3g08600 FvH4_3g25280 FvH4_3g25310 FvH4_3g25320 FvH4_3g25340
malus_domestica MD03G1148000.v1.1 MD11G1166800.v1.1 MD11G1166900.v1.1 MD11G1167000.v1.1 MD11G1167300.v1.1 MD11G1167400.v1.1 MD11G1169200.v1.1 MD11G1169300.v1.1
prunus_persica Prupe.2G051900_v2.0.a1 Prupe.2G052000_v2.0.a1 Prupe.6G132900_v2.0.a1 Prupe.6G133000_v2.0.a1 Prupe.6G133100_v2.0.a1 Prupe.6G133200_v2.0.a1 Prupe.6G133300_v2.0.a1 Prupe.6G133400_v2.0.a1
pyrus_communis pycom02g19060 pycom11g13850 pycom11g13920 pycom11g13930 pycom13g26450
rosa_chinensis RchiOBHm_Chr5g0046741 RchiOBHm_Chr5g0046751 RchiOBHm_Chr5g0046771 RchiOBHm_Chr5g0046781 RchiOBHm_Chr5g0046791 RchiOBHm_Chr5g0046801 RchiOBHm_Chr5g0046811 RchiOBHm_Chr5g0046821
rosa_laevigata RLG00000029833 RLG00000029836 RLG00000034439 RLG00000034440 RLG00000034441 RLG00000034442 RLG00000034446 RLG00000034447 RLG00000034448 RLG00000034449 RLG00000034450
rosa_multiflora Rmu_co8272763.1_g000001 Rmu_co8405265.1_g000001 Rmu_sc0002264.1_g000001 Rmu_sc0002264.1_g000009 Rmu_sc0002264.1_g000010 Rmu_sc0002264.1_g000013 Rmu_sc0002264.1_g000024 Rmu_sc0004673.1_g000002 Rmu_sc0006050.1_g000018 Rmu_sc0006050.1_g000030 Rmu_sc0010683.1_g000003 Rmu_sc0010683.1_g000005 Rmu_sc0015021.1_g000001 Rmu_sc0019490.1_g000007 Rmu_sc0025079.1_g000001
rosa_roxburghii Rroxscaffold_1G00034530 Rroxscaffold_1G00034540 Rroxscaffold_1G00034550 Rroxscaffold_1G00034610 Rroxscaffold_1G00034620 Rroxscaffold_1G00034630
rosa_rugosa Rorug01G0085700 Rorug01G0085700 Rorug05G0231300 Rorug05G0231300 Rorug05G0231500 Rorug05G0231900 Rorug05G0232000 Rorug05G0232100 Rorug05G0232200
rosa_samantha Rh1AG104300 Rh1BG082600 Rh5AG311400 Rh5BG319600 Rh5BG319700 Rh5BG319800 Rh5BG319900 Rh5BG320100 Rh5BG320200 Rh5BG320400 Rh5CG345600 Rh5CG345700 Rh5CG345800 Rh5CG345900 Rh5CG346100 Rh5CG346400 Rh5CG346500 Rh5CG346600 Rh5DG330400 Rh5DG330500 Rh5DG330600 Rh5DG330700 Rh5DG330800 Rh5DG330900 Rh5DG331000 Rh5DG331100
rosa_wichuraiana Rw0G015910 Rw5G029040 Rw5G029050 Rw5G029060 Rw5G029070 Rw5G029100 Rw5G029110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 272
AccB1I GGYRCC 1 cut(s) 272
AccI GTMKAC 2 cut(s) 63, 294
AciI CCGC 1 cut(s) 453
AclWI GGATC 1 cut(s) 11
AcoI YGGCCR 2 cut(s) 9, 172
AcsI RAATTY 1 cut(s) 200
AcuI CTGAAG 2 cut(s) 158, 311
AfaI GTAC 3 cut(s) 135, 274, 377
AfiI CCNNNNNNNGG 1 cut(s) 53
AflII CTTAAG 1 cut(s) 533
AgsI TTSAA 3 cut(s) 200, 281, 527
AluBI AGCT 4 cut(s) 209, 253, 518, 532
AluI AGCT 4 cut(s) 209, 253, 518, 532
Alw21I GWGCWC 1 cut(s) 255
Alw26I GTCTC 2 cut(s) 105, 548
AlwI GGATC 1 cut(s) 11
AlwNI CAGNNNCTG 1 cut(s) 440
AoxI GGCC 3 cut(s) 9, 172, 358
ApoI RAATTY 1 cut(s) 200
Asp718I GGTACC 1 cut(s) 272
AspS9I GGNCC 1 cut(s) 358
AsuHPI GGTGA 1 cut(s) 457
BalI TGGCCA 1 cut(s) 174
BanI GGYRCC 1 cut(s) 272
BanII GRGCYC 2 cut(s) 120, 255
Bbv12I GWGCWC 1 cut(s) 255
BceAI ACGGC 1 cut(s) 176
BcoDI GTCTC 2 cut(s) 105, 548
BfaI CTAG 1 cut(s) 429
BfrI CTTAAG 1 cut(s) 533
BlpI GCTNAGC 1 cut(s) 249
BmcAI AGTACT 1 cut(s) 135
BmgT120I GGNCC 1 cut(s) 358
BmiI GGNNCC 1 cut(s) 274
Bpu1102I GCTNAGC 1 cut(s) 249
BsaI GGTCTC 1 cut(s) 548
BsaJI CCNNGG 2 cut(s) 147, 354
Bsc4I CCNNNNNNNGG 1 cut(s) 53
Bse1I ACTGG 2 cut(s) 91, 373
Bse3DI GCAATG 1 cut(s) 12
BseDI CCNNGG 2 cut(s) 147, 354
BseGI GGATG 1 cut(s) 235
BseLI CCNNNNNNNGG 1 cut(s) 53
BseMI GCAATG 1 cut(s) 12
BseMII CTCAG 2 cut(s) 240, 332
BseNI ACTGG 2 cut(s) 91, 373
BseRI GAGGAG 2 cut(s) 123, 245
BseYI CCCAGC 1 cut(s) 205
BsgI GTGCAG 1 cut(s) 453
BshFI GGCC 3 cut(s) 11, 174, 360
BshNI GGYRCC 1 cut(s) 272
BsiHKAI GWGCWC 1 cut(s) 255
BsiSI CCGG 1 cut(s) 12
BslI CCNNNNNNNGG 1 cut(s) 53
BsmAI GTCTC 2 cut(s) 105, 548
BsmBI CGTCTC 1 cut(s) 105
BsnI GGCC 3 cut(s) 11, 174, 360
Bso31I GGTCTC 1 cut(s) 548
Bsp1286I GDGCHC 2 cut(s) 120, 255
Bsp143I GATC 1 cut(s) 16
Bsp1720I GCTNAGC 1 cut(s) 249
BspACI CCGC 1 cut(s) 453
BspANI GGCC 3 cut(s) 11, 174, 360
BspCNI CTCAG 2 cut(s) 241, 331
BspLI GGNNCC 1 cut(s) 274
BspPI GGATC 1 cut(s) 11
BspT107I GGYRCC 1 cut(s) 272
BspTI CTTAAG 1 cut(s) 533
BspTNI GGTCTC 1 cut(s) 548
BsrDI GCAATG 1 cut(s) 12
BsrI ACTGG 2 cut(s) 91, 373
BssECI CCNNGG 2 cut(s) 147, 354
BssMI GATC 1 cut(s) 16
BssT1I CCWWGG 1 cut(s) 354
Bst4CI ACNGT 5 cut(s) 61, 133, 272, 442, 485
Bst6I CTCTTC 2 cut(s) 263, 330
BstAFI CTTAAG 1 cut(s) 533
BstAPI GCANNNNNTGC 1 cut(s) 413
BstC8I GCNNGC 2 cut(s) 92, 211
BstDEI CTNAG 3 cut(s) 29, 249, 318
BstF5I GGATG 1 cut(s) 235
BstKTI GATC 1 cut(s) 19
BstMAI GTCTC 2 cut(s) 105, 548
BstMBI GATC 1 cut(s) 16
BstMWI GCNNNNNNNGC 3 cut(s) 149, 413, 545
BstNSI RCATGY 1 cut(s) 94
BstX2I RGATCY 1 cut(s) 16
BstYI RGATCY 1 cut(s) 16
BsuRI GGCC 3 cut(s) 11, 174, 360
BtsCI GGATG 1 cut(s) 235
BtsIMutI CAGTG 2 cut(s) 84, 490
Cac8I GCNNGC 2 cut(s) 92, 211
CaiI CAGNNNCTG 1 cut(s) 440
Cfr13I GGNCC 1 cut(s) 358
Csp6I GTAC 3 cut(s) 134, 273, 376
CspCI CAANNNNNGTGG 2 cut(s) 457, 492
CviAII CATG 2 cut(s) 91, 558
CviQI GTAC 3 cut(s) 134, 273, 376
DdeI CTNAG 3 cut(s) 29, 249, 318
DpnI GATC 1 cut(s) 18
DpnII GATC 1 cut(s) 16
EaeI YGGCCR 2 cut(s) 9, 172
Eam1104I CTCTTC 2 cut(s) 263, 330
EarI CTCTTC 2 cut(s) 263, 330
Ecl136II GAGCTC 1 cut(s) 253
Eco130I CCWWGG 1 cut(s) 354
Eco24I GRGCYC 2 cut(s) 120, 255
Eco31I GGTCTC 1 cut(s) 548
Eco53kI GAGCTC 1 cut(s) 253
Eco57I CTGAAG 2 cut(s) 158, 311
EcoICRI GAGCTC 1 cut(s) 253
EcoO109I RGGNCCY 1 cut(s) 358
EcoRI GAATTC 1 cut(s) 200
EcoT14I CCWWGG 1 cut(s) 354
EcoT38I GRGCYC 2 cut(s) 120, 255
ErhI CCWWGG 1 cut(s) 354
Esp3I CGTCTC 1 cut(s) 105
FaeI CATG 2 cut(s) 94, 561
FaiI YATR 6 cut(s) 41, 82, 92, 187, 189, 559
FatI CATG 2 cut(s) 90, 557
FauI CCCGC 1 cut(s) 460
FauNDI CATATG 1 cut(s) 187
FblI GTMKAC 2 cut(s) 63, 294
FokI GGATG 1 cut(s) 222
FriOI GRGCYC 2 cut(s) 120, 255
FspBI CTAG 1 cut(s) 429
GsaI CCCAGC 1 cut(s) 209
HaeIII GGCC 3 cut(s) 11, 174, 360
HapII CCGG 1 cut(s) 12
Hin1II CATG 2 cut(s) 94, 561
HincII GTYRAC 1 cut(s) 295
HindII GTYRAC 1 cut(s) 295
HindIII AAGCTT 1 cut(s) 530
HinfI GANTC 2 cut(s) 322, 386
HpaII CCGG 1 cut(s) 12
HphI GGTGA 1 cut(s) 457
Hpy166II GTNNAC 4 cut(s) 64, 295, 367, 465
Hpy188I TCNGA 2 cut(s) 321, 330
Hpy188III TCNNGA 1 cut(s) 20
Hpy8I GTNNAC 4 cut(s) 64, 295, 367, 465
HpyAV CCTTC 1 cut(s) 133
HpyCH4III ACNGT 5 cut(s) 61, 133, 272, 442, 485
HpyCH4V TGCA 1 cut(s) 434
HpyF10VI GCNNNNNNNGC 3 cut(s) 149, 413, 545
HpyF3I CTNAG 3 cut(s) 29, 249, 318
Hsp92II CATG 2 cut(s) 94, 561
KpnI GGTACC 1 cut(s) 276
Kzo9I GATC 1 cut(s) 16
LmnI GCTCC 2 cut(s) 258, 553
MaeI CTAG 1 cut(s) 429
MaeIII GTNAC 1 cut(s) 32
MalI GATC 1 cut(s) 18
MboI GATC 1 cut(s) 16
MboII GAAGA 3 cut(s) 67, 250, 317
MflI RGATCY 1 cut(s) 16
MhlI GDGCHC 2 cut(s) 120, 255
MlsI TGGCCA 1 cut(s) 174
MluCI AATT 3 cut(s) 200, 408, 447
MluNI TGGCCA 1 cut(s) 174
MlyI GAGTC 1 cut(s) 316
MmeI TCCRAC 1 cut(s) 85
MnlI CCTC 6 cut(s) 57, 101, 157, 249, 266, 320
Mox20I TGGCCA 1 cut(s) 174
MscI TGGCCA 1 cut(s) 174
MseI TTAA 3 cut(s) 168, 504, 534
MslI CAYNNNNRTG 1 cut(s) 89
Msp20I TGGCCA 1 cut(s) 174
MspA1I CMGCKG 1 cut(s) 209
MspCI CTTAAG 1 cut(s) 533
MspI CCGG 1 cut(s) 12
MwoI GCNNNNNNNGC 3 cut(s) 149, 413, 545
NdeI CATATG 1 cut(s) 187
NdeII GATC 1 cut(s) 16
NlaIII CATG 2 cut(s) 94, 561
NlaIV GGNNCC 1 cut(s) 274
NmeAIII GCCGAG 2 cut(s) 128, 377
NmuCI GTSAC 1 cut(s) 32
NspI RCATGY 1 cut(s) 94
PaeI GCATGC 1 cut(s) 94
PfeI GAWTC 1 cut(s) 386
PflFI GACNNNGTC 1 cut(s) 485
PleI GAGTC 1 cut(s) 316
PpsI GAGTC 1 cut(s) 316
Psp124BI GAGCTC 1 cut(s) 255
PspFI CCCAGC 1 cut(s) 205
PspN4I GGNNCC 1 cut(s) 274
PspPI GGNCC 1 cut(s) 358
PstNI CAGNNNCTG 1 cut(s) 440
PsuI RGATCY 1 cut(s) 16
PsyI GACNNNGTC 1 cut(s) 485
PvuII CAGCTG 1 cut(s) 209
RsaI GTAC 3 cut(s) 135, 274, 377
RsaNI GTAC 3 cut(s) 134, 273, 376
RseI CAYNNNNRTG 1 cut(s) 89
SacI GAGCTC 1 cut(s) 255
SalI GTCGAC 1 cut(s) 293
SaqAI TTAA 3 cut(s) 168, 504, 534
Sau3AI GATC 1 cut(s) 16
Sau96I GGNCC 1 cut(s) 358
ScaI AGTACT 1 cut(s) 135
SchI GAGTC 1 cut(s) 316
SduI GDGCHC 2 cut(s) 120, 255
SetI ASST 7 cut(s) 149, 211, 255, 312, 342, 520, 534
SmiMI CAYNNNNRTG 1 cut(s) 89
SmlI CTYRAG 1 cut(s) 533
SmoI CTYRAG 1 cut(s) 533
SphI GCATGC 1 cut(s) 94
Sse9I AATT 3 cut(s) 200, 408, 447
SsiI CCGC 1 cut(s) 453
SspMI CTAG 1 cut(s) 429
SstI GAGCTC 1 cut(s) 255
StyI CCWWGG 1 cut(s) 354
TaaI ACNGT 5 cut(s) 61, 133, 272, 442, 485
TaqI TCGA 1 cut(s) 294
TasI AATT 3 cut(s) 200, 408, 447
TatI WGTACW 2 cut(s) 133, 375
TfiI GAWTC 1 cut(s) 386
Tru1I TTAA 3 cut(s) 168, 504, 534
Tru9I TTAA 3 cut(s) 168, 504, 534
TscAI CASTG 2 cut(s) 91, 490
TseFI GTSAC 1 cut(s) 32
Tsp45I GTSAC 1 cut(s) 32
TspDTI ATGAA 2 cut(s) 28, 174
TspGWI ACGGA 1 cut(s) 81
TspRI CASTG 2 cut(s) 91, 490
Tth111I GACNNNGTC 1 cut(s) 485
Vha464I CTTAAG 1 cut(s) 533
XapI RAATTY 1 cut(s) 200
XceI RCATGY 1 cut(s) 94
XmiI GTMKAC 2 cut(s) 63, 294
XspI CTAG 1 cut(s) 429
ZrmI AGTACT 1 cut(s) 135
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.