Rmu_sc0006050.1_g000018

germin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006050.1
OG0000346
Physical Location & Seq
Forward (+)
37351 .. 37788
438 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006050.1_g000018.1.cds

Sequence Viewer

Length: 438 bp
atggcaatggccggagatccagacattcttagtgacttcatagtgcctccaaatggaacagtagacggaaacttcttcacatacactcgcatgcgtgttcttgttggaagagacgagcccaaaaacttcacagtactgaaggcaacctcggcagagtttcctgctcttaatggcgagagtgtttcatatgccgtccttgaattcccagttggcactactaacccaccacacactcatcctcgctctgctgagctcctcttccttattgacagtacccttgaagttggctttgtcgacacaaagaacaacctctttactcagactcttcagataggcgacctctttgtttttcccaagggactcgtgcacttccaatacaatgctgactcagaaaacccagctatagcaatttctgcttttggaagtgcaagtgcatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cupin_1

Protein Analysis

145

Amino Acids

15.7

Weight (kDa)

4.58

Isoelectric Point (pI)

18.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000346)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g08590 FvH4_3g08600 FvH4_3g25280 FvH4_3g25310 FvH4_3g25320 FvH4_3g25340
malus_domestica MD03G1148000.v1.1 MD11G1166800.v1.1 MD11G1166900.v1.1 MD11G1167000.v1.1 MD11G1167300.v1.1 MD11G1167400.v1.1 MD11G1169200.v1.1 MD11G1169300.v1.1
prunus_persica Prupe.2G051900_v2.0.a1 Prupe.2G052000_v2.0.a1 Prupe.6G132900_v2.0.a1 Prupe.6G133000_v2.0.a1 Prupe.6G133100_v2.0.a1 Prupe.6G133200_v2.0.a1 Prupe.6G133300_v2.0.a1 Prupe.6G133400_v2.0.a1
pyrus_communis pycom02g19060 pycom11g13850 pycom11g13920 pycom11g13930 pycom13g26450
rosa_chinensis RchiOBHm_Chr5g0046741 RchiOBHm_Chr5g0046751 RchiOBHm_Chr5g0046771 RchiOBHm_Chr5g0046781 RchiOBHm_Chr5g0046791 RchiOBHm_Chr5g0046801 RchiOBHm_Chr5g0046811 RchiOBHm_Chr5g0046821
rosa_laevigata RLG00000029833 RLG00000029836 RLG00000034439 RLG00000034440 RLG00000034441 RLG00000034442 RLG00000034446 RLG00000034447 RLG00000034448 RLG00000034449 RLG00000034450
rosa_multiflora Rmu_co8272763.1_g000001 Rmu_co8405265.1_g000001 Rmu_sc0002264.1_g000001 Rmu_sc0002264.1_g000009 Rmu_sc0002264.1_g000010 Rmu_sc0002264.1_g000013 Rmu_sc0002264.1_g000024 Rmu_sc0004673.1_g000002 Rmu_sc0006050.1_g000018 Rmu_sc0006050.1_g000030 Rmu_sc0010683.1_g000003 Rmu_sc0010683.1_g000005 Rmu_sc0015021.1_g000001 Rmu_sc0019490.1_g000007 Rmu_sc0025079.1_g000001
rosa_roxburghii Rroxscaffold_1G00034530 Rroxscaffold_1G00034540 Rroxscaffold_1G00034550 Rroxscaffold_1G00034610 Rroxscaffold_1G00034620 Rroxscaffold_1G00034630
rosa_rugosa Rorug01G0085700 Rorug01G0085700 Rorug05G0231300 Rorug05G0231300 Rorug05G0231500 Rorug05G0231900 Rorug05G0232000 Rorug05G0232100 Rorug05G0232200
rosa_samantha Rh1AG104300 Rh1BG082600 Rh5AG311400 Rh5BG319600 Rh5BG319700 Rh5BG319800 Rh5BG319900 Rh5BG320100 Rh5BG320200 Rh5BG320400 Rh5CG345600 Rh5CG345700 Rh5CG345800 Rh5CG345900 Rh5CG346100 Rh5CG346400 Rh5CG346500 Rh5CG346600 Rh5DG330400 Rh5DG330500 Rh5DG330600 Rh5DG330700 Rh5DG330800 Rh5DG330900 Rh5DG331000 Rh5DG331100
rosa_wichuraiana Rw0G015910 Rw5G029040 Rw5G029050 Rw5G029060 Rw5G029070 Rw5G029100 Rw5G029110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 63, 294
AclWI GGATC 1 cut(s) 11
AcoI YGGCCR 1 cut(s) 9
AcsI RAATTY 1 cut(s) 200
AcuI CTGAAG 2 cut(s) 158, 311
AfaI GTAC 2 cut(s) 135, 274
AfiI CCNNNNNNNGG 1 cut(s) 53
AgsI TTSAA 2 cut(s) 200, 281
AjuI GAANNNNNNNTTGG 2 cut(s) 192, 224
AluBI AGCT 2 cut(s) 253, 401
AluI AGCT 2 cut(s) 253, 401
Alw21I GWGCWC 2 cut(s) 255, 369
Alw26I GTCTC 1 cut(s) 105
Alw44I GTGCAC 1 cut(s) 365
AlwI GGATC 1 cut(s) 11
AoxI GGCC 1 cut(s) 9
ApaLI GTGCAC 1 cut(s) 365
ApoI RAATTY 1 cut(s) 200
BaeGI GKGCMC 1 cut(s) 369
BanII GRGCYC 2 cut(s) 120, 255
BauI CACGAG 1 cut(s) 362
Bbv12I GWGCWC 2 cut(s) 255, 369
BceAI ACGGC 1 cut(s) 176
BcoDI GTCTC 1 cut(s) 105
BfmI CTRYAG 1 cut(s) 402
BlpI GCTNAGC 1 cut(s) 249
BmcAI AGTACT 1 cut(s) 135
BmrI ACTGGG 1 cut(s) 200
BmuI ACTGGG 1 cut(s) 200
Bpu1102I GCTNAGC 1 cut(s) 249
BsaJI CCNNGG 2 cut(s) 147, 354
Bsc4I CCNNNNNNNGG 1 cut(s) 53
Bse1I ACTGG 1 cut(s) 206
Bse3DI GCAATG 1 cut(s) 12
BseDI CCNNGG 2 cut(s) 147, 354
BseGI GGATG 1 cut(s) 235
BseLI CCNNNNNNNGG 1 cut(s) 53
BseMI GCAATG 1 cut(s) 12
BseMII CTCAG 3 cut(s) 240, 332, 402
BseNI ACTGG 1 cut(s) 206
BseRI GAGGAG 1 cut(s) 245
BseSI GKGCMC 1 cut(s) 369
BseYI CCCAGC 1 cut(s) 397
BshFI GGCC 1 cut(s) 11
BsiHKAI GWGCWC 2 cut(s) 255, 369
BsiSI CCGG 1 cut(s) 12
BslFI GGGAC 1 cut(s) 372
BslI CCNNNNNNNGG 1 cut(s) 53
BsmAI GTCTC 1 cut(s) 105
BsmBI CGTCTC 1 cut(s) 105
BsmFI GGGAC 1 cut(s) 372
BsnI GGCC 1 cut(s) 11
Bsp1286I GDGCHC 3 cut(s) 120, 255, 369
Bsp143I GATC 1 cut(s) 16
Bsp1720I GCTNAGC 1 cut(s) 249
BspANI GGCC 1 cut(s) 11
BspCNI CTCAG 3 cut(s) 241, 331, 401
BspPI GGATC 1 cut(s) 11
BsrDI GCAATG 1 cut(s) 12
BsrI ACTGG 1 cut(s) 206
BssECI CCNNGG 2 cut(s) 147, 354
BssMI GATC 1 cut(s) 16
BssSI CACGAG 1 cut(s) 362
BssT1I CCWWGG 1 cut(s) 354
Bst2BI CACGAG 1 cut(s) 362
Bst4CI ACNGT 3 cut(s) 61, 133, 272
Bst6I CTCTTC 3 cut(s) 103, 263, 330
BstAPI GCANNNNNTGC 1 cut(s) 413
BstC8I GCNNGC 1 cut(s) 92
BstDEI CTNAG 4 cut(s) 29, 249, 318, 388
BstF5I GGATG 1 cut(s) 235
BstKTI GATC 1 cut(s) 19
BstMAI GTCTC 1 cut(s) 105
BstMBI GATC 1 cut(s) 16
BstMWI GCNNNNNNNGC 2 cut(s) 149, 413
BstNSI RCATGY 1 cut(s) 94
BstSFI CTRYAG 1 cut(s) 402
BstSLI GKGCMC 1 cut(s) 369
BstX2I RGATCY 1 cut(s) 16
BstYI RGATCY 1 cut(s) 16
BsuRI GGCC 1 cut(s) 11
BtsCI GGATG 1 cut(s) 235
Cac8I GCNNGC 1 cut(s) 92
Csp6I GTAC 2 cut(s) 134, 273
CviAII CATG 2 cut(s) 91, 435
CviJI RGCY 5 cut(s) 11, 118, 253, 288, 401
CviKI_1 RGCY 5 cut(s) 11, 118, 253, 288, 401
CviQI GTAC 2 cut(s) 134, 273
DdeI CTNAG 4 cut(s) 29, 249, 318, 388
DpnI GATC 1 cut(s) 18
DpnII GATC 1 cut(s) 16
EaeI YGGCCR 1 cut(s) 9
Eam1104I CTCTTC 3 cut(s) 103, 263, 330
EarI CTCTTC 3 cut(s) 103, 263, 330
Ecl136II GAGCTC 1 cut(s) 253
Eco130I CCWWGG 1 cut(s) 354
Eco24I GRGCYC 2 cut(s) 120, 255
Eco53kI GAGCTC 1 cut(s) 253
Eco57I CTGAAG 2 cut(s) 158, 311
EcoICRI GAGCTC 1 cut(s) 253
EcoRI GAATTC 1 cut(s) 200
EcoT14I CCWWGG 1 cut(s) 354
EcoT38I GRGCYC 2 cut(s) 120, 255
ErhI CCWWGG 1 cut(s) 354
Esp3I CGTCTC 1 cut(s) 105
FaeI CATG 2 cut(s) 94, 438
FaiI YATR 7 cut(s) 41, 82, 92, 187, 189, 404, 436
FaqI GGGAC 1 cut(s) 372
FatI CATG 2 cut(s) 90, 434
FauNDI CATATG 1 cut(s) 187
FblI GTMKAC 2 cut(s) 63, 294
FokI GGATG 1 cut(s) 222
FriOI GRGCYC 2 cut(s) 120, 255
GsaI CCCAGC 1 cut(s) 401
HaeIII GGCC 1 cut(s) 11
HapII CCGG 1 cut(s) 12
Hin1II CATG 2 cut(s) 94, 438
HincII GTYRAC 1 cut(s) 295
HindII GTYRAC 1 cut(s) 295
HinfI GANTC 3 cut(s) 322, 360, 386
HpaII CCGG 1 cut(s) 12
Hpy166II GTNNAC 3 cut(s) 64, 295, 367
Hpy188I TCNGA 3 cut(s) 321, 330, 391
Hpy188III TCNNGA 1 cut(s) 20
Hpy8I GTNNAC 3 cut(s) 64, 295, 367
HpyAV CCTTC 1 cut(s) 133
HpyCH4III ACNGT 3 cut(s) 61, 133, 272
HpyCH4V TGCA 3 cut(s) 367, 428, 434
HpyF10VI GCNNNNNNNGC 2 cut(s) 149, 413
HpyF3I CTNAG 4 cut(s) 29, 249, 318, 388
Hsp92II CATG 2 cut(s) 94, 438
Kzo9I GATC 1 cut(s) 16
LmnI GCTCC 1 cut(s) 258
LpnPI CCDG 5 cut(s) 25, 33, 174, 219, 411
MaeIII GTNAC 1 cut(s) 32
MalI GATC 1 cut(s) 18
MboI GATC 1 cut(s) 16
MboII GAAGA 4 cut(s) 67, 120, 250, 317
MflI RGATCY 1 cut(s) 16
MhlI GDGCHC 3 cut(s) 120, 255, 369
MluCI AATT 2 cut(s) 200, 408
MlyI GAGTC 3 cut(s) 316, 354, 380
MmeI TCCRAC 1 cut(s) 85
MnlI CCTC 6 cut(s) 57, 157, 249, 266, 320, 350
MseI TTAA 1 cut(s) 168
MslI CAYNNNNRTG 1 cut(s) 89
MspI CCGG 1 cut(s) 12
MwoI GCNNNNNNNGC 2 cut(s) 149, 413
NdeI CATATG 1 cut(s) 187
NdeII GATC 1 cut(s) 16
NlaIII CATG 2 cut(s) 94, 438
NmeAIII GCCGAG 1 cut(s) 128
NmuCI GTSAC 1 cut(s) 32
NspI RCATGY 1 cut(s) 94
PaeI GCATGC 1 cut(s) 94
PleI GAGTC 3 cut(s) 316, 354, 380
PpsI GAGTC 3 cut(s) 316, 354, 380
Psp124BI GAGCTC 1 cut(s) 255
PspFI CCCAGC 1 cut(s) 397
PsuI RGATCY 1 cut(s) 16
RsaI GTAC 2 cut(s) 135, 274
RsaNI GTAC 2 cut(s) 134, 273
RseI CAYNNNNRTG 1 cut(s) 89
SacI GAGCTC 1 cut(s) 255
SalI GTCGAC 1 cut(s) 293
SaqAI TTAA 1 cut(s) 168
Sau3AI GATC 1 cut(s) 16
ScaI AGTACT 1 cut(s) 135
SchI GAGTC 3 cut(s) 316, 354, 380
SduI GDGCHC 3 cut(s) 120, 255, 369
SetI ASST 5 cut(s) 149, 255, 312, 342, 403
SfcI CTRYAG 1 cut(s) 402
SmiMI CAYNNNNRTG 1 cut(s) 89
SphI GCATGC 1 cut(s) 94
Sse9I AATT 2 cut(s) 200, 408
SstI GAGCTC 1 cut(s) 255
StyI CCWWGG 1 cut(s) 354
TaaI ACNGT 3 cut(s) 61, 133, 272
TaqI TCGA 1 cut(s) 294
TasI AATT 2 cut(s) 200, 408
TatI WGTACW 1 cut(s) 133
Tru1I TTAA 1 cut(s) 168
Tru9I TTAA 1 cut(s) 168
TseFI GTSAC 1 cut(s) 32
Tsp45I GTSAC 1 cut(s) 32
TspDTI ATGAA 2 cut(s) 28, 174
TspGWI ACGGA 1 cut(s) 81
VneI GTGCAC 1 cut(s) 365
XapI RAATTY 1 cut(s) 200
XceI RCATGY 1 cut(s) 94
XmiI GTMKAC 2 cut(s) 63, 294
ZrmI AGTACT 1 cut(s) 135
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.