Rmu_sc0002264.1_g000010

germin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002264.1
OG0000346
Physical Location & Seq
Reverse (-)
36894 .. 38783
1890 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002264.1_g000010.1.cds

Sequence Viewer

Length: 675 bp
atgactctgaacagattctccaccgtgatcaaccgcgtctccgtcaccgatcgcaattgtagctctcgctaccctcgcccgtcgtttcgccgtcacctagccaccctcacgccggagccttgccgctgcttggtctggggaacttgcgttcaccgccgccaacgtgcaaaacctaggttttgctctacgagatcgctccgaagacttcggaagtttggagatccagacattcttagtgactttgttgcgcctccaaatggaacagtagatggaaacttcttcacatacaccggcatgcgtgttcttgttggaggagacaagcccaaaacctttcacacagtactgaatgcaacctcggctgagttccctgctcttaatgggcagagtgtttcatatgccgtccatatattcccagctggcactgctaacccaccacacacgcatcctcgctccgctgagctcctcttctttgttgacggaagccttgaagttggctttgtcgacacaaagaacaacctctttactcagactcttcaggcaggaagttcaagtgcaggaaccgtgtcaattcctaccactttgtttgccaccaacatcgatgacaatgtcttggctttatccttcaagactgatgtagccactattcaaaagctgaaggccggtcttgctccgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cupin_1

Protein Analysis

224

Amino Acids

24.56

Weight (kDa)

9.97

Isoelectric Point (pI)

33.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000346)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g08590 FvH4_3g08600 FvH4_3g25280 FvH4_3g25310 FvH4_3g25320 FvH4_3g25340
malus_domestica MD03G1148000.v1.1 MD11G1166800.v1.1 MD11G1166900.v1.1 MD11G1167000.v1.1 MD11G1167300.v1.1 MD11G1167400.v1.1 MD11G1169200.v1.1 MD11G1169300.v1.1
prunus_persica Prupe.2G051900_v2.0.a1 Prupe.2G052000_v2.0.a1 Prupe.6G132900_v2.0.a1 Prupe.6G133000_v2.0.a1 Prupe.6G133100_v2.0.a1 Prupe.6G133200_v2.0.a1 Prupe.6G133300_v2.0.a1 Prupe.6G133400_v2.0.a1
pyrus_communis pycom02g19060 pycom11g13850 pycom11g13920 pycom11g13930 pycom13g26450
rosa_chinensis RchiOBHm_Chr5g0046741 RchiOBHm_Chr5g0046751 RchiOBHm_Chr5g0046771 RchiOBHm_Chr5g0046781 RchiOBHm_Chr5g0046791 RchiOBHm_Chr5g0046801 RchiOBHm_Chr5g0046811 RchiOBHm_Chr5g0046821
rosa_laevigata RLG00000029833 RLG00000029836 RLG00000034439 RLG00000034440 RLG00000034441 RLG00000034442 RLG00000034446 RLG00000034447 RLG00000034448 RLG00000034449 RLG00000034450
rosa_multiflora Rmu_co8272763.1_g000001 Rmu_co8405265.1_g000001 Rmu_sc0002264.1_g000001 Rmu_sc0002264.1_g000009 Rmu_sc0002264.1_g000010 Rmu_sc0002264.1_g000013 Rmu_sc0002264.1_g000024 Rmu_sc0004673.1_g000002 Rmu_sc0006050.1_g000018 Rmu_sc0006050.1_g000030 Rmu_sc0010683.1_g000003 Rmu_sc0010683.1_g000005 Rmu_sc0015021.1_g000001 Rmu_sc0019490.1_g000007 Rmu_sc0025079.1_g000001
rosa_roxburghii Rroxscaffold_1G00034530 Rroxscaffold_1G00034540 Rroxscaffold_1G00034550 Rroxscaffold_1G00034610 Rroxscaffold_1G00034620 Rroxscaffold_1G00034630
rosa_rugosa Rorug01G0085700 Rorug01G0085700 Rorug05G0231300 Rorug05G0231300 Rorug05G0231500 Rorug05G0231900 Rorug05G0232000 Rorug05G0232100 Rorug05G0232200
rosa_samantha Rh1AG104300 Rh1BG082600 Rh5AG311400 Rh5BG319600 Rh5BG319700 Rh5BG319800 Rh5BG319900 Rh5BG320100 Rh5BG320200 Rh5BG320400 Rh5CG345600 Rh5CG345700 Rh5CG345800 Rh5CG345900 Rh5CG346100 Rh5CG346400 Rh5CG346500 Rh5CG346600 Rh5DG330400 Rh5DG330500 Rh5DG330600 Rh5DG330700 Rh5DG330800 Rh5DG330900 Rh5DG331000 Rh5DG331100
rosa_wichuraiana Rw0G015910 Rw5G029040 Rw5G029050 Rw5G029060 Rw5G029070 Rw5G029100 Rw5G029110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 501
AccII CGCG 1 cut(s) 36
AciI CCGC 5 cut(s) 34, 124, 154, 157, 453
AclWI GGATC 1 cut(s) 215
AcuI CTGAAG 2 cut(s) 518, 674
AfaI GTAC 1 cut(s) 342
AfiI CCNNNNNNNGG 3 cut(s) 112, 130, 257
AgsI TTSAA 4 cut(s) 488, 549, 625, 647
AloI GAACNNNNNNTCC 3 cut(s) 34, 132, 164
AluBI AGCT 4 cut(s) 63, 416, 460, 652
AluI AGCT 4 cut(s) 63, 416, 460, 652
Alw21I GWGCWC 1 cut(s) 462
Alw26I GTCTC 2 cut(s) 43, 309
AlwI GGATC 1 cut(s) 215
AoxI GGCC 1 cut(s) 657
ApeKI GCWGC 1 cut(s) 126
Asp700I GAANNNNTTC 1 cut(s) 14
AspA2I CCTAGG 1 cut(s) 173
AspLEI GCGC 1 cut(s) 250
AsuHPI GGTGA 3 cut(s) 37, 86, 143
AvrII CCTAGG 1 cut(s) 173
BanII GRGCYC 1 cut(s) 462
BbsI GAAGAC 1 cut(s) 208
Bbv12I GWGCWC 1 cut(s) 462
BbvI GCAGC 1 cut(s) 113
BccI CCATC 1 cut(s) 263
BceAI ACGGC 2 cut(s) 75, 383
BclI TGATCA 1 cut(s) 27
BcoDI GTCTC 2 cut(s) 43, 309
BfaI CTAG 2 cut(s) 98, 174
BisI GCNGC 3 cut(s) 124, 127, 157
BlnI CCTAGG 1 cut(s) 173
BlpI GCTNAGC 1 cut(s) 456
BlsI GCNGC 3 cut(s) 125, 128, 158
BmcAI AGTACT 1 cut(s) 342
BmiI GGNNCC 2 cut(s) 117, 559
BmsI GCATC 1 cut(s) 451
BpiI GAAGAC 1 cut(s) 208
Bpu1102I GCTNAGC 1 cut(s) 456
Bsa29I ATCGAT 1 cut(s) 597
BsaJI CCNNGG 2 cut(s) 173, 354
BsaXI ACNNNNNCTCC 3 cut(s) 23, 32, 53
Bsc4I CCNNNNNNNGG 3 cut(s) 112, 130, 257
Bse118I RCCGGY 2 cut(s) 290, 659
BseCI ATCGAT 1 cut(s) 597
BseDI CCNNGG 2 cut(s) 173, 354
BseGI GGATG 1 cut(s) 442
BseLI CCNNNNNNNGG 3 cut(s) 112, 130, 257
BseMII CTCAG 3 cut(s) 351, 447, 539
BseRI GAGGAG 2 cut(s) 327, 452
BseXI GCAGC 1 cut(s) 113
BseYI CCCAGC 1 cut(s) 412
BsgI GTGCAG 1 cut(s) 573
Bsh1236I CGCG 1 cut(s) 36
Bsh1285I CGRYCG 1 cut(s) 52
BshFI GGCC 1 cut(s) 659
BshVI ATCGAT 1 cut(s) 597
BsiEI CGRYCG 1 cut(s) 52
BsiHKAI GWGCWC 1 cut(s) 462
BsiSI CCGG 3 cut(s) 113, 291, 660
BslI CCNNNNNNNGG 3 cut(s) 112, 130, 257
BsmAI GTCTC 2 cut(s) 43, 309
BsmBI CGTCTC 1 cut(s) 43
BsmI GAATGC 1 cut(s) 352
BsnI GGCC 1 cut(s) 659
Bsp1286I GDGCHC 1 cut(s) 462
Bsp143I GATC 4 cut(s) 27, 49, 191, 220
Bsp1720I GCTNAGC 1 cut(s) 456
BspACI CCGC 5 cut(s) 34, 124, 154, 157, 453
BspANI GGCC 1 cut(s) 659
BspCNI CTCAG 3 cut(s) 352, 448, 538
BspDI ATCGAT 1 cut(s) 597
BspFNI CGCG 1 cut(s) 36
BspLI GGNNCC 2 cut(s) 117, 559
BspPI GGATC 1 cut(s) 215
BsrFI RCCGGY 2 cut(s) 290, 659
BssAI RCCGGY 2 cut(s) 290, 659
BssECI CCNNGG 2 cut(s) 173, 354
BssMI GATC 4 cut(s) 27, 49, 191, 220
BssT1I CCWWGG 1 cut(s) 173
Bst4CI ACNGT 4 cut(s) 25, 265, 340, 562
Bst6I CTCTTC 2 cut(s) 470, 537
BstC8I GCNNGC 2 cut(s) 296, 418
BstDEI CTNAG 4 cut(s) 233, 360, 456, 525
BstF5I GGATG 1 cut(s) 442
BstFNI CGCG 1 cut(s) 36
BstHHI GCGC 1 cut(s) 250
BstKTI GATC 4 cut(s) 30, 52, 194, 223
BstMAI GTCTC 2 cut(s) 43, 309
BstMBI GATC 4 cut(s) 27, 49, 191, 220
BstMCI CGRYCG 1 cut(s) 52
BstMWI GCNNNNNNNGC 6 cut(s) 60, 75, 153, 356, 422, 665
BstNSI RCATGY 1 cut(s) 298
BstUI CGCG 1 cut(s) 36
BstV1I GCAGC 1 cut(s) 113
BstV2I GAAGAC 1 cut(s) 208
BstX2I RGATCY 1 cut(s) 220
BstYI RGATCY 1 cut(s) 220
Bsu15I ATCGAT 1 cut(s) 597
BsuRI GGCC 1 cut(s) 659
BsuTUI ATCGAT 1 cut(s) 597
BtsCI GGATG 1 cut(s) 442
BtsI GCAGTG 1 cut(s) 420
BtsIMutI CAGTG 1 cut(s) 420
Cac8I GCNNGC 2 cut(s) 296, 418
CfoI GCGC 1 cut(s) 250
Cfr10I RCCGGY 2 cut(s) 290, 659
ClaI ATCGAT 1 cut(s) 597
CseI GACGC 1 cut(s) 25
Csp6I GTAC 1 cut(s) 341
CspCI CAANNNNNGTGG 2 cut(s) 565, 600
CviAII CATG 1 cut(s) 295
CviQI GTAC 1 cut(s) 341
DdeI CTNAG 4 cut(s) 233, 360, 456, 525
DpnI GATC 4 cut(s) 29, 51, 193, 222
DpnII GATC 4 cut(s) 27, 49, 191, 220
Eam1104I CTCTTC 2 cut(s) 470, 537
EarI CTCTTC 2 cut(s) 470, 537
Ecl136II GAGCTC 1 cut(s) 460
Eco130I CCWWGG 1 cut(s) 173
Eco24I GRGCYC 1 cut(s) 462
Eco53kI GAGCTC 1 cut(s) 460
Eco57I CTGAAG 2 cut(s) 518, 674
EcoICRI GAGCTC 1 cut(s) 460
EcoT14I CCWWGG 1 cut(s) 173
EcoT38I GRGCYC 1 cut(s) 462
ErhI CCWWGG 1 cut(s) 173
Esp3I CGTCTC 1 cut(s) 43
FaeI CATG 1 cut(s) 298
FaiI YATR 6 cut(s) 286, 296, 394, 396, 405, 407
FatI CATG 1 cut(s) 294
FauNDI CATATG 1 cut(s) 394
FbaI TGATCA 1 cut(s) 27
FblI GTMKAC 1 cut(s) 501
Fnu4HI GCNGC 3 cut(s) 124, 127, 157
FokI GGATG 1 cut(s) 429
FriOI GRGCYC 1 cut(s) 462
Fsp4HI GCNGC 3 cut(s) 124, 127, 157
FspBI CTAG 2 cut(s) 98, 174
GlaI GCGC 1 cut(s) 249
GluI GCNGC 3 cut(s) 124, 127, 157
GsaI CCCAGC 1 cut(s) 416
HaeIII GGCC 1 cut(s) 659
HapII CCGG 3 cut(s) 113, 291, 660
HgaI GACGC 1 cut(s) 25
HhaI GCGC 1 cut(s) 250
Hin1II CATG 1 cut(s) 298
Hin6I GCGC 1 cut(s) 248
HinP1I GCGC 1 cut(s) 248
HincII GTYRAC 2 cut(s) 475, 502
HindII GTYRAC 2 cut(s) 475, 502
HinfI GANTC 3 cut(s) 4, 15, 529
HpaII CCGG 3 cut(s) 113, 291, 660
HphI GGTGA 3 cut(s) 37, 86, 143
Hpy166II GTNNAC 3 cut(s) 151, 475, 502
Hpy188I TCNGA 4 cut(s) 9, 200, 210, 528
Hpy188III TCNNGA 2 cut(s) 224, 625
Hpy8I GTNNAC 3 cut(s) 151, 475, 502
Hpy99I CGWCG 1 cut(s) 85
HpyAV CCTTC 2 cut(s) 631, 649
HpyCH4III ACNGT 4 cut(s) 25, 265, 340, 562
HpyCH4IV ACGT 1 cut(s) 163
HpyCH4V TGCA 3 cut(s) 167, 350, 554
HpyF10VI GCNNNNNNNGC 6 cut(s) 60, 75, 153, 356, 422, 665
HpyF3I CTNAG 4 cut(s) 233, 360, 456, 525
HpySE526I ACGT 1 cut(s) 163
Hsp92II CATG 1 cut(s) 298
HspAI GCGC 1 cut(s) 248
Ksp22I TGATCA 1 cut(s) 27
Kzo9I GATC 4 cut(s) 27, 49, 191, 220
LmnI GCTCC 5 cut(s) 115, 201, 455, 465, 673
Lsp1109I GCAGC 1 cut(s) 113
LweI GCATC 1 cut(s) 451
MaeI CTAG 2 cut(s) 98, 174
MaeII ACGT 1 cut(s) 163
MaeIII GTNAC 3 cut(s) 43, 92, 236
MalI GATC 4 cut(s) 29, 51, 193, 222
MboI GATC 4 cut(s) 27, 49, 191, 220
MboII GAAGA 4 cut(s) 213, 271, 457, 524
MfeI CAATTG 1 cut(s) 55
MflI RGATCY 1 cut(s) 220
MhlI GDGCHC 1 cut(s) 462
MluCI AATT 2 cut(s) 55, 567
MlyI GAGTC 1 cut(s) 523
MmeI TCCRAC 1 cut(s) 289
MnlI CCTC 8 cut(s) 84, 116, 261, 305, 364, 456, 473, 527
MroXI GAANNNNTTC 1 cut(s) 14
MseI TTAA 1 cut(s) 375
MslI CAYNNNNRTG 1 cut(s) 293
MspA1I CMGCKG 3 cut(s) 126, 416, 455
MspI CCGG 3 cut(s) 113, 291, 660
MunI CAATTG 1 cut(s) 55
Mva1269I GAATGC 1 cut(s) 352
MvnI CGCG 1 cut(s) 36
MwoI GCNNNNNNNGC 6 cut(s) 60, 75, 153, 356, 422, 665
NdeI CATATG 1 cut(s) 394
NdeII GATC 4 cut(s) 27, 49, 191, 220
NlaIII CATG 1 cut(s) 298
NlaIV GGNNCC 2 cut(s) 117, 559
NmeAIII GCCGAG 1 cut(s) 335
NmuCI GTSAC 3 cut(s) 43, 92, 236
NspI RCATGY 1 cut(s) 298
PaeI GCATGC 1 cut(s) 298
PctI GAATGC 1 cut(s) 352
PdmI GAANNNNTTC 1 cut(s) 14
PfeI GAWTC 1 cut(s) 15
PflFI GACNNNGTC 1 cut(s) 605
PkrI GCNGC 3 cut(s) 125, 128, 158
Ple19I CGATCG 1 cut(s) 52
PleI GAGTC 1 cut(s) 523
PpsI GAGTC 1 cut(s) 523
Psp124BI GAGCTC 1 cut(s) 462
PspFI CCCAGC 1 cut(s) 412
PspN4I GGNNCC 2 cut(s) 117, 559
PsuI RGATCY 1 cut(s) 220
PsyI GACNNNGTC 1 cut(s) 605
PvuI CGATCG 1 cut(s) 52
PvuII CAGCTG 1 cut(s) 416
RsaI GTAC 1 cut(s) 342
RsaNI GTAC 1 cut(s) 341
RseI CAYNNNNRTG 1 cut(s) 293
SacI GAGCTC 1 cut(s) 462
SalI GTCGAC 1 cut(s) 500
SaqAI TTAA 1 cut(s) 375
SatI GCNGC 3 cut(s) 124, 127, 157
Sau3AI GATC 4 cut(s) 27, 49, 191, 220
ScaI AGTACT 1 cut(s) 342
SchI GAGTC 1 cut(s) 523
SduI GDGCHC 1 cut(s) 462
SfaNI GCATC 1 cut(s) 451
SmiMI CAYNNNNRTG 1 cut(s) 293
SphI GCATGC 1 cut(s) 298
Sse9I AATT 2 cut(s) 55, 567
SsiI CCGC 5 cut(s) 34, 124, 154, 157, 453
SspMI CTAG 2 cut(s) 98, 174
SstI GAGCTC 1 cut(s) 462
StyI CCWWGG 1 cut(s) 173
TaaI ACNGT 4 cut(s) 25, 265, 340, 562
TaiI ACGT 1 cut(s) 166
TaqI TCGA 2 cut(s) 501, 597
TasI AATT 2 cut(s) 55, 567
TatI WGTACW 1 cut(s) 340
TauI GCSGC 2 cut(s) 126, 159
TfiI GAWTC 1 cut(s) 15
Tru1I TTAA 1 cut(s) 375
Tru9I TTAA 1 cut(s) 375
TscAI CASTG 1 cut(s) 427
TseFI GTSAC 3 cut(s) 43, 92, 236
TseI GCWGC 1 cut(s) 126
Tsp45I GTSAC 3 cut(s) 43, 92, 236
TspDTI ATGAA 1 cut(s) 381
TspGWI ACGGA 3 cut(s) 31, 492, 660
TspRI CASTG 1 cut(s) 427
Tth111I GACNNNGTC 1 cut(s) 605
XceI RCATGY 1 cut(s) 298
XmaJI CCTAGG 1 cut(s) 173
XmiI GTMKAC 1 cut(s) 501
XmnI GAANNNNTTC 1 cut(s) 14
XspI CTAG 2 cut(s) 98, 174
ZrmI AGTACT 1 cut(s) 342
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.