Rmu_sc0002264.1_g000009

germin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002264.1
OG0000346
Physical Location & Seq
Reverse (-)
35597 .. 36224
628 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002264.1_g000009.1.cds

Sequence Viewer

Length: 537 bp
atggcttcaagaacttccagcctcaaagacttctcactactaatttgttcacttgccattgttcaaatgacattggcaggagatccagacattcttagtgactttgttgcgcctccaaatggaacagtagatggaaacttcttcacatacaccggcatgcgtgttcttgttggaggagacaagcccaaaacctttcacacagtactgaatgcaacctcggctgagttccctgctcttaatgggcagagtgtttcatatgccgtccatatattcccagctggcactgctaacccaccacacacgcatcctcgctccgctgagctcctcttctttgttgacggaagccttgaagttggctttgtcgacacaaagaataacctctttactcagactcttcaggcaggaagttcaagtgcaggaaccgtgtcaattcctaccactttgtttgccaccaacatcgatgacaatgtcttggctttatccttcaagactgatgtagccactattcaaaagctcaaggccggtcttgctctgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cupin_1

Protein Analysis

178

Amino Acids

18.74

Weight (kDa)

5.38

Isoelectric Point (pI)

19.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000346)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g08590 FvH4_3g08600 FvH4_3g25280 FvH4_3g25310 FvH4_3g25320 FvH4_3g25340
malus_domestica MD03G1148000.v1.1 MD11G1166800.v1.1 MD11G1166900.v1.1 MD11G1167000.v1.1 MD11G1167300.v1.1 MD11G1167400.v1.1 MD11G1169200.v1.1 MD11G1169300.v1.1
prunus_persica Prupe.2G051900_v2.0.a1 Prupe.2G052000_v2.0.a1 Prupe.6G132900_v2.0.a1 Prupe.6G133000_v2.0.a1 Prupe.6G133100_v2.0.a1 Prupe.6G133200_v2.0.a1 Prupe.6G133300_v2.0.a1 Prupe.6G133400_v2.0.a1
pyrus_communis pycom02g19060 pycom11g13850 pycom11g13920 pycom11g13930 pycom13g26450
rosa_chinensis RchiOBHm_Chr5g0046741 RchiOBHm_Chr5g0046751 RchiOBHm_Chr5g0046771 RchiOBHm_Chr5g0046781 RchiOBHm_Chr5g0046791 RchiOBHm_Chr5g0046801 RchiOBHm_Chr5g0046811 RchiOBHm_Chr5g0046821
rosa_laevigata RLG00000029833 RLG00000029836 RLG00000034439 RLG00000034440 RLG00000034441 RLG00000034442 RLG00000034446 RLG00000034447 RLG00000034448 RLG00000034449 RLG00000034450
rosa_multiflora Rmu_co8272763.1_g000001 Rmu_co8405265.1_g000001 Rmu_sc0002264.1_g000001 Rmu_sc0002264.1_g000009 Rmu_sc0002264.1_g000010 Rmu_sc0002264.1_g000013 Rmu_sc0002264.1_g000024 Rmu_sc0004673.1_g000002 Rmu_sc0006050.1_g000018 Rmu_sc0006050.1_g000030 Rmu_sc0010683.1_g000003 Rmu_sc0010683.1_g000005 Rmu_sc0015021.1_g000001 Rmu_sc0019490.1_g000007 Rmu_sc0025079.1_g000001
rosa_roxburghii Rroxscaffold_1G00034530 Rroxscaffold_1G00034540 Rroxscaffold_1G00034550 Rroxscaffold_1G00034610 Rroxscaffold_1G00034620 Rroxscaffold_1G00034630
rosa_rugosa Rorug01G0085700 Rorug01G0085700 Rorug05G0231300 Rorug05G0231300 Rorug05G0231500 Rorug05G0231900 Rorug05G0232000 Rorug05G0232100 Rorug05G0232200
rosa_samantha Rh1AG104300 Rh1BG082600 Rh5AG311400 Rh5BG319600 Rh5BG319700 Rh5BG319800 Rh5BG319900 Rh5BG320100 Rh5BG320200 Rh5BG320400 Rh5CG345600 Rh5CG345700 Rh5CG345800 Rh5CG345900 Rh5CG346100 Rh5CG346400 Rh5CG346500 Rh5CG346600 Rh5DG330400 Rh5DG330500 Rh5DG330600 Rh5DG330700 Rh5DG330800 Rh5DG330900 Rh5DG331000 Rh5DG331100
rosa_wichuraiana Rw0G015910 Rw5G029040 Rw5G029050 Rw5G029060 Rw5G029070 Rw5G029100 Rw5G029110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 363
AciI CCGC 1 cut(s) 315
AclWI GGATC 1 cut(s) 77
AcuI CTGAAG 1 cut(s) 380
AfaI GTAC 1 cut(s) 204
AfiI CCNNNNNNNGG 1 cut(s) 119
AgsI TTSAA 6 cut(s) 9, 65, 350, 411, 487, 509
AluBI AGCT 3 cut(s) 278, 322, 514
AluI AGCT 3 cut(s) 278, 322, 514
Alw21I GWGCWC 1 cut(s) 324
Alw26I GTCTC 1 cut(s) 171
AlwI GGATC 1 cut(s) 77
AoxI GGCC 1 cut(s) 519
AspLEI GCGC 1 cut(s) 112
BanII GRGCYC 1 cut(s) 324
Bbv12I GWGCWC 1 cut(s) 324
BccI CCATC 1 cut(s) 125
BceAI ACGGC 1 cut(s) 245
BcoDI GTCTC 1 cut(s) 171
BlpI GCTNAGC 1 cut(s) 318
BmcAI AGTACT 1 cut(s) 204
BmiI GGNNCC 1 cut(s) 421
BmsI GCATC 1 cut(s) 313
Bpu1102I GCTNAGC 1 cut(s) 318
BpuEI CTTGAG 1 cut(s) 500
Bsa29I ATCGAT 1 cut(s) 459
BsaJI CCNNGG 1 cut(s) 216
Bsc4I CCNNNNNNNGG 1 cut(s) 119
Bse118I RCCGGY 2 cut(s) 152, 521
BseCI ATCGAT 1 cut(s) 459
BseDI CCNNGG 1 cut(s) 216
BseGI GGATG 1 cut(s) 304
BseLI CCNNNNNNNGG 1 cut(s) 119
BseMII CTCAG 3 cut(s) 213, 309, 401
BseRI GAGGAG 2 cut(s) 189, 314
BseYI CCCAGC 1 cut(s) 274
BsgI GTGCAG 1 cut(s) 435
BshFI GGCC 1 cut(s) 521
BshVI ATCGAT 1 cut(s) 459
BsiHKAI GWGCWC 1 cut(s) 324
BsiSI CCGG 2 cut(s) 153, 522
BslI CCNNNNNNNGG 1 cut(s) 119
BsmAI GTCTC 1 cut(s) 171
BsmI GAATGC 1 cut(s) 214
BsnI GGCC 1 cut(s) 521
Bsp1286I GDGCHC 1 cut(s) 324
Bsp143I GATC 1 cut(s) 82
Bsp1720I GCTNAGC 1 cut(s) 318
BspACI CCGC 1 cut(s) 315
BspANI GGCC 1 cut(s) 521
BspCNI CTCAG 3 cut(s) 214, 310, 400
BspDI ATCGAT 1 cut(s) 459
BspLI GGNNCC 1 cut(s) 421
BspPI GGATC 1 cut(s) 77
BsrFI RCCGGY 2 cut(s) 152, 521
BssAI RCCGGY 2 cut(s) 152, 521
BssECI CCNNGG 1 cut(s) 216
BssMI GATC 1 cut(s) 82
Bst4CI ACNGT 3 cut(s) 127, 202, 424
Bst6I CTCTTC 2 cut(s) 332, 399
BstC8I GCNNGC 2 cut(s) 158, 280
BstDEI CTNAG 4 cut(s) 95, 222, 318, 387
BstF5I GGATG 1 cut(s) 304
BstHHI GCGC 1 cut(s) 112
BstKTI GATC 1 cut(s) 85
BstMAI GTCTC 1 cut(s) 171
BstMBI GATC 1 cut(s) 82
BstMWI GCNNNNNNNGC 3 cut(s) 218, 284, 527
BstNSI RCATGY 1 cut(s) 160
BstX2I RGATCY 1 cut(s) 82
BstYI RGATCY 1 cut(s) 82
Bsu15I ATCGAT 1 cut(s) 459
BsuRI GGCC 1 cut(s) 521
BsuTUI ATCGAT 1 cut(s) 459
BtsCI GGATG 1 cut(s) 304
BtsI GCAGTG 1 cut(s) 282
BtsIMutI CAGTG 1 cut(s) 282
Cac8I GCNNGC 2 cut(s) 158, 280
CfoI GCGC 1 cut(s) 112
Cfr10I RCCGGY 2 cut(s) 152, 521
ClaI ATCGAT 1 cut(s) 459
Csp6I GTAC 1 cut(s) 203
CspCI CAANNNNNGTGG 2 cut(s) 427, 462
CviAII CATG 1 cut(s) 157
CviQI GTAC 1 cut(s) 203
DdeI CTNAG 4 cut(s) 95, 222, 318, 387
DpnI GATC 1 cut(s) 84
DpnII GATC 1 cut(s) 82
Eam1104I CTCTTC 2 cut(s) 332, 399
EarI CTCTTC 2 cut(s) 332, 399
Ecl136II GAGCTC 1 cut(s) 322
Eco24I GRGCYC 1 cut(s) 324
Eco53kI GAGCTC 1 cut(s) 322
Eco57I CTGAAG 1 cut(s) 380
EcoICRI GAGCTC 1 cut(s) 322
EcoT38I GRGCYC 1 cut(s) 324
FaeI CATG 1 cut(s) 160
FaiI YATR 6 cut(s) 148, 158, 256, 258, 267, 269
FatI CATG 1 cut(s) 156
FauNDI CATATG 1 cut(s) 256
FblI GTMKAC 1 cut(s) 363
FokI GGATG 1 cut(s) 291
FriOI GRGCYC 1 cut(s) 324
GlaI GCGC 1 cut(s) 111
GsaI CCCAGC 1 cut(s) 278
HaeIII GGCC 1 cut(s) 521
HapII CCGG 2 cut(s) 153, 522
HhaI GCGC 1 cut(s) 112
Hin1II CATG 1 cut(s) 160
Hin6I GCGC 1 cut(s) 110
HinP1I GCGC 1 cut(s) 110
HincII GTYRAC 2 cut(s) 337, 364
HindII GTYRAC 2 cut(s) 337, 364
HinfI GANTC 1 cut(s) 391
HpaII CCGG 2 cut(s) 153, 522
Hpy166II GTNNAC 3 cut(s) 50, 337, 364
Hpy188I TCNGA 1 cut(s) 390
Hpy188III TCNNGA 3 cut(s) 9, 86, 487
Hpy8I GTNNAC 3 cut(s) 50, 337, 364
HpyAV CCTTC 1 cut(s) 493
HpyCH4III ACNGT 3 cut(s) 127, 202, 424
HpyCH4V TGCA 2 cut(s) 212, 416
HpyF10VI GCNNNNNNNGC 3 cut(s) 218, 284, 527
HpyF3I CTNAG 4 cut(s) 95, 222, 318, 387
Hsp92II CATG 1 cut(s) 160
HspAI GCGC 1 cut(s) 110
Kzo9I GATC 1 cut(s) 82
LmnI GCTCC 2 cut(s) 317, 327
LweI GCATC 1 cut(s) 313
MaeIII GTNAC 1 cut(s) 98
MalI GATC 1 cut(s) 84
MboI GATC 1 cut(s) 82
MboII GAAGA 3 cut(s) 133, 319, 386
MflI RGATCY 1 cut(s) 82
MhlI GDGCHC 1 cut(s) 324
MluCI AATT 2 cut(s) 42, 429
MlyI GAGTC 1 cut(s) 385
MmeI TCCRAC 1 cut(s) 151
MnlI CCTC 7 cut(s) 32, 123, 167, 226, 318, 335, 389
MseI TTAA 1 cut(s) 237
MslI CAYNNNNRTG 1 cut(s) 155
MspA1I CMGCKG 2 cut(s) 278, 317
MspI CCGG 2 cut(s) 153, 522
Mva1269I GAATGC 1 cut(s) 214
MwoI GCNNNNNNNGC 3 cut(s) 218, 284, 527
NdeI CATATG 1 cut(s) 256
NdeII GATC 1 cut(s) 82
NlaIII CATG 1 cut(s) 160
NlaIV GGNNCC 1 cut(s) 421
NmeAIII GCCGAG 1 cut(s) 197
NmuCI GTSAC 1 cut(s) 98
NspI RCATGY 1 cut(s) 160
PaeI GCATGC 1 cut(s) 160
PctI GAATGC 1 cut(s) 214
PflFI GACNNNGTC 1 cut(s) 467
PleI GAGTC 1 cut(s) 385
PpsI GAGTC 1 cut(s) 385
Psp124BI GAGCTC 1 cut(s) 324
PspFI CCCAGC 1 cut(s) 274
PspN4I GGNNCC 1 cut(s) 421
PsuI RGATCY 1 cut(s) 82
PsyI GACNNNGTC 1 cut(s) 467
PvuII CAGCTG 1 cut(s) 278
RsaI GTAC 1 cut(s) 204
RsaNI GTAC 1 cut(s) 203
RseI CAYNNNNRTG 1 cut(s) 155
SacI GAGCTC 1 cut(s) 324
SalI GTCGAC 1 cut(s) 362
SaqAI TTAA 1 cut(s) 237
Sau3AI GATC 1 cut(s) 82
ScaI AGTACT 1 cut(s) 204
SchI GAGTC 1 cut(s) 385
SduI GDGCHC 1 cut(s) 324
SetI ASST 6 cut(s) 194, 218, 280, 324, 381, 516
SfaNI GCATC 1 cut(s) 313
SmiMI CAYNNNNRTG 1 cut(s) 155
SmlI CTYRAG 1 cut(s) 515
SmoI CTYRAG 1 cut(s) 515
SphI GCATGC 1 cut(s) 160
Sse9I AATT 2 cut(s) 42, 429
SsiI CCGC 1 cut(s) 315
SstI GAGCTC 1 cut(s) 324
TaaI ACNGT 3 cut(s) 127, 202, 424
TaqI TCGA 2 cut(s) 363, 459
TasI AATT 2 cut(s) 42, 429
TatI WGTACW 1 cut(s) 202
Tru1I TTAA 1 cut(s) 237
Tru9I TTAA 1 cut(s) 237
TscAI CASTG 1 cut(s) 289
TseFI GTSAC 1 cut(s) 98
Tsp45I GTSAC 1 cut(s) 98
TspDTI ATGAA 1 cut(s) 243
TspGWI ACGGA 1 cut(s) 354
TspRI CASTG 1 cut(s) 289
Tth111I GACNNNGTC 1 cut(s) 467
XceI RCATGY 1 cut(s) 160
XmiI GTMKAC 1 cut(s) 363
ZrmI AGTACT 1 cut(s) 204
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.