Rorug01G0085700

Cupin domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0000346
Physical Location & Seq
Reverse (-)
13922055 .. 13928684
6630 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0085700.1

Sequence Viewer

Length: 2694 bp
ATGAGGAGAAAACCCATTCTCCCCAGCAGCAGCAGCAGGGCCTTGTTTCTCCACCTCAATTCCAAACGCTTCTTCTCCTTCACTGCTTCCGCTTCCGCTTCCGAGCCAGTCCTCGACGATCTCCCCTCACAGCTCTTGTCCATCCTCTCCCAACCCAATTGGCAAAGACACCCCTCCCTCAAACCCCTAATCCCCTCCATATCCCCCTCCCATGTCTCCTCCCTCTTCTCCCTCAACCACCACCTCCCCCCCCAAACCGCCCTCGCCTTCTTCAACTGGATCGCCCTCAAACCCGACTTCACCCACACCGTCCACTCCCACTCATCTCTCCTCTCCCTTCTCCTCCCCAACCCTTCCTTCCTCTCCGTCGCCGAAAAGATCCGCATTTCCATGATCAAGTCCTCCACCTCCCCCCCTGACGCCCTCTTCGTCCTCCACCATCTCCGCTACTTGAACAAGACCCACTTCAAGCTCACCCTCAGGTCATACAACTTTCTTCTCATGTCATTGTCCAAGTTTTCGCTGTTTGATGATTTAAAAACTGTGTATATGGAGATGCTGGAGGATAAGGTTTCCCCCAATTTGCATACATTTAACACTATGGTCAATGCTTATTGTAAATTGGGGAATTTGGCTGAGGCAGAGCTGTATTTCAGTAAGATAGGGCAGGCCGGGTTGCGGCCCGATACTTTTAGCTACACGTCTTTGATACTGGGGCATTGTAGGAATAAGGATGTGGACAGTGCTTATAGGGTGTTTAGGGTAATGCCGCAGAAAGAGTGTCGGAGAAATGAGGTTTCGTATACGAATCTGATACATGGGTTGTGTGAGGCGGATCGGATTGGTGAGGCTTTTAAGTTGTTTTCGCAGATGGGGGAGGATGATTGTCAACCGACTGTCCGCACATTTACAGTTCTTATCTCTGCATTTTGTAGATTGGGGAAGAAGTCAGAGGCAATGAAGTTATTTAGAGAGATGAGGGAAAAGGGTTGTGAACCGAATGTTCATACTTATACCGTGCTTATTGATAGTATGTGCAAGGAGAATAAGCTAGATGAGGCTAGGAGGTTGCTGAATGAGATGTTGGAGAAACGGTTGGTTCCTACTGTTGTCACATATAATGCATTGATTGATGGGTATTGCAAGGAGGGAGCAGTTGAGGCTGCAATTGATATTAAGGCTTTGATGGAATCAAATAAATGTTGTCCAAATGCTCGAACGTACAATGAATTAATTTTTGGGTTTTGTAAAAGGAAAGATGTAAACCAGGCGATGGCATTGCTCGCTAAGATGCTCGATCTGAAGCTCTCACCTAGTGTGATTACGTATAACTCATTAATACATGGCCACTGTAAAGCAGGTGATTTAGACTGTGCTTATAGGTTGCTTGATTTGATGAAGGACAGTGGTTTGGTTCCTGATCAGTGGACCTATAGTGTTTTTATAGACAGTCTTTGTAAGAGTGGGAGACTAGAAGAAGCTCATGCCCTGTTTGATTCTCTTAAGGAGAAAGGCGTAAAGTCAAATGAAGTGACATTTACTGCTTTGATTGATGGTTACTGCAAGGTGGGGAAAATTAATGATGCCCATTCCTTGTTTGATAGGATGCTTACAGAGGGCTGTAACCCGAACACATGCACTTACAATACCTTGGTAGATGGATTGTGCAAAGAAGGAAAATTGCAGGATGCAATATTACTGGTGGAGAAGATGTTAAGTACGGGCCTGACGCATGCACCACATACTTATTCTATACTGATCAAACATATGCTGAAAGAAGGGGACTTCGGCCATGCTCATAGACTGTTCAACCAGATGGTTTGTTCTGGTAGTAAACCGGACGTATTTATTTACACTTCGTTTATTCATGCATATTGCAGCATAGGGGATATAGAAGAGGCAGAAAAGCTGATGGTTAAGATGAGTGAAGAAGGAATTAGAGCAGATTCGTTGACGTACACATTATTGATTAATACATATGGACGTATGGGACTACTAGATTCTGCATTTGGTGTTCTTAAGCGCATGTTTGGTGCTTGCTGCGATCCTTCTCACTATACCTATTCTTTCCTGATCAAACATCTTTTGCGCTCGAAGACGAATGACGATATAGTGAGACTTGATTTGGCCTCAAGCTTCATTGATATTGCTGATGTATGGAAGACAATGGATTATCAAAATGCTTTAGATCTGTTTGACAAGATGGCTGAACATGGCTGTGCACCCAATGGCAACACATATGAAAAGCTTATAATAGGTCTTTGCAAAGAGGGGCGCTTGGAAGTAGCCCAGAGGCTATATGTTCATATGAGAGATAGGCGGATTTCTCCCAGCCAGGATATTTATCATTCTCTTATTAATTGTTGCTGTCAGTTGCAAGTGTATGGAGAGGCGGCAAACCTGCTGGATACGATGATTGAGGATGGTTATTTACCAACATTAGAGTCTTCCAAGTTGCTTGTATGTGGGCTATTCATTGAGGAGAATATTGAGAAGGCAAAAGCCGTTTTCTGTAGTTTGCTCCGTTGTGAGTATAACTTTGATGAAGTAGCTTGGAAAGTTCTCCATGATGGTTTACTTAAGAGGGGTCTTGTCAATAGATGCTCTGAGTTGATAACCATCATGGAGCAGATGGGTTGCAAGCTTCATCCTCAGACATATTCAATGCTGATTGAGGGAATTGATGGAACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cupin_1

Protein Analysis

897

Amino Acids

101.41

Weight (kDa)

6.89

Isoelectric Point (pI)

34.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 162 - 207 3e-07 PPR repeat family
PPR_1 PF12854 191 - 215 6e-07 PPR repeat
PPR_2 PF13041 197 - 241 6.8e-09 PPR repeat family
PPR_1 PF12854 225 - 256 2.9e-09 PPR repeat
PPR_2 PF13041 228 - 276 1.8e-13 PPR repeat family
PPR_long PF17177 244 - 320 4.2e-06 Pentacotripeptide-repeat region of PRORP
PPR_1 PF12854 259 - 291 1.1e-08 PPR repeat
PPR_2 PF13041 264 - 312 1.7e-15 PPR repeat family
PPR_3 PF13812 286 - 344 7.3e-13 Pentatricopeptide repeat domain
PPR_1 PF12854 295 - 327 1.9e-10 PPR repeat
PPR PF01535 302 - 331 3.3e-09 PPR repeat
PPR_2 PF13041 304 - 347 2.9e-16 PPR repeat family
PPR_long PF17177 318 - 407 4e-08 Pentacotripeptide-repeat region of PRORP
PPR_3 PF13812 321 - 380 5.6e-13 Pentatricopeptide repeat domain
PPR_1 PF12854 329 - 361 1.9e-13 PPR repeat
PPR PF01535 337 - 365 6.2e-07 PPR repeat
PPR_2 PF13041 339 - 373 7.5e-08 PPR repeat family
PPR_3 PF13812 356 - 412 2e-08 Pentatricopeptide repeat domain
PPR_1 PF12854 365 - 392 2.4e-09 PPR repeat
PPR_2 PF13041 368 - 417 7.6e-16 PPR repeat family
PPR PF01535 371 - 401 7.5e-06 PPR repeat
PPR_long PF17177 393 - 480 1.7e-06 Pentacotripeptide-repeat region of PRORP
PPR_1 PF12854 401 - 431 1.1e-08 PPR repeat
PPR_2 PF13041 407 - 451 4.1e-12 PPR repeat family
PPR_3 PF13812 427 - 483 7e-08 Pentatricopeptide repeat domain
PPR_1 PF12854 436 - 467 3e-13 PPR repeat
PPR_2 PF13041 438 - 487 6.8e-17 PPR repeat family
PPR PF01535 441 - 471 4.9e-08 PPR repeat
PPR_1 PF12854 470 - 500 2.4e-09 PPR repeat
PPR PF01535 477 - 506 7.2e-07 PPR repeat
PPR_2 PF13041 481 - 522 1.6e-12 PPR repeat family
PPR_long PF17177 491 - 595 4e-09 Pentacotripeptide-repeat region of PRORP
TPR_24 PF23276 494 - 605 6.5e-08 Fungal tetratrico peptide repeats
PPR_3 PF13812 497 - 552 6.9e-12 Pentatricopeptide repeat domain
PPR_1 PF12854 504 - 536 3.6e-11 PPR repeat
PPR_2 PF13041 509 - 557 3.2e-18 PPR repeat family
PPR PF01535 511 - 541 9.3e-09 PPR repeat
PPR_1 PF12854 540 - 571 1e-13 PPR repeat
PPR_2 PF13041 543 - 589 3.9e-11 PPR repeat family
PPR PF01535 547 - 575 3.6e-06 PPR repeat
PPR_2 PF13041 582 - 619 1.1e-07 PPR repeat family
PPR_3 PF13812 601 - 662 2.1e-08 Pentatricopeptide repeat domain
PPR_1 PF12854 610 - 642 5e-09 PPR repeat
PPR_2 PF13041 613 - 660 1e-12 PPR repeat family
PPR PF01535 617 - 646 2.1e-06 PPR repeat
PPR_3 PF13812 637 - 693 1.9e-06 Pentatricopeptide repeat domain
PPR_2 PF13041 649 - 695 8.1e-08 PPR repeat family
PPR_long PF17177 718 - 852 5.6e-06 Pentacotripeptide-repeat region of PRORP
PPR_2 PF13041 724 - 756 3e-06 PPR repeat family
PPR_3 PF13812 731 - 789 2.1e-06 Pentatricopeptide repeat domain
PPR_2 PF13041 746 - 791 1.5e-07 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000346)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g08590 FvH4_3g08600 FvH4_3g25280 FvH4_3g25310 FvH4_3g25320 FvH4_3g25340
malus_domestica MD03G1148000.v1.1 MD11G1166800.v1.1 MD11G1166900.v1.1 MD11G1167000.v1.1 MD11G1167300.v1.1 MD11G1167400.v1.1 MD11G1169200.v1.1 MD11G1169300.v1.1
prunus_persica Prupe.2G051900_v2.0.a1 Prupe.2G052000_v2.0.a1 Prupe.6G132900_v2.0.a1 Prupe.6G133000_v2.0.a1 Prupe.6G133100_v2.0.a1 Prupe.6G133200_v2.0.a1 Prupe.6G133300_v2.0.a1 Prupe.6G133400_v2.0.a1
pyrus_communis pycom02g19060 pycom11g13850 pycom11g13920 pycom11g13930 pycom13g26450
rosa_chinensis RchiOBHm_Chr5g0046741 RchiOBHm_Chr5g0046751 RchiOBHm_Chr5g0046771 RchiOBHm_Chr5g0046781 RchiOBHm_Chr5g0046791 RchiOBHm_Chr5g0046801 RchiOBHm_Chr5g0046811 RchiOBHm_Chr5g0046821
rosa_laevigata RLG00000029833 RLG00000029836 RLG00000034439 RLG00000034440 RLG00000034441 RLG00000034442 RLG00000034446 RLG00000034447 RLG00000034448 RLG00000034449 RLG00000034450
rosa_multiflora Rmu_co8272763.1_g000001 Rmu_co8405265.1_g000001 Rmu_sc0002264.1_g000001 Rmu_sc0002264.1_g000009 Rmu_sc0002264.1_g000010 Rmu_sc0002264.1_g000013 Rmu_sc0002264.1_g000024 Rmu_sc0004673.1_g000002 Rmu_sc0006050.1_g000018 Rmu_sc0006050.1_g000030 Rmu_sc0010683.1_g000003 Rmu_sc0010683.1_g000005 Rmu_sc0015021.1_g000001 Rmu_sc0019490.1_g000007 Rmu_sc0025079.1_g000001
rosa_roxburghii Rroxscaffold_1G00034530 Rroxscaffold_1G00034540 Rroxscaffold_1G00034550 Rroxscaffold_1G00034610 Rroxscaffold_1G00034620 Rroxscaffold_1G00034630
rosa_rugosa Rorug01G0085700 Rorug01G0085700 Rorug05G0231300 Rorug05G0231300 Rorug05G0231500 Rorug05G0231900 Rorug05G0232000 Rorug05G0232100 Rorug05G0232200
rosa_samantha Rh1AG104300 Rh1BG082600 Rh5AG311400 Rh5BG319600 Rh5BG319700 Rh5BG319800 Rh5BG319900 Rh5BG320100 Rh5BG320200 Rh5BG320400 Rh5CG345600 Rh5CG345700 Rh5CG345800 Rh5CG345900 Rh5CG346100 Rh5CG346400 Rh5CG346500 Rh5CG346600 Rh5DG330400 Rh5DG330500 Rh5DG330600 Rh5DG330700 Rh5DG330800 Rh5DG330900 Rh5DG331000 Rh5DG331100
rosa_wichuraiana Rw0G015910 Rw5G029040 Rw5G029050 Rw5G029060 Rw5G029070 Rw5G029100 Rw5G029110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 2252
AarI CACCTGC 1 cut(s) 1349
Acc36I ACCTGC 2 cut(s) 1349, 2409
AccB7I CCANNNNNTGG 1 cut(s) 1273
AccI GTMKAC 1 cut(s) 803
AclWI GGATC 4 cut(s) 287, 373, 843, 2039
AcoI YGGCCR 2 cut(s) 1345, 1789
AcsI RAATTY 1 cut(s) 628
AcuI CTGAAG 1 cut(s) 1322
AcyI GRCGYC 1 cut(s) 420
AdeI CACNNNGTG 1 cut(s) 1316
AfaI GTAC 3 cut(s) 1223, 1720, 1958
AfiI CCNNNNNNNGG 2 cut(s) 678, 1273
AflII CTTAAG 3 cut(s) 1502, 2018, 2579
AflIII ACRYGT 1 cut(s) 699
AgsI TTSAA 5 cut(s) 274, 454, 469, 1810, 2664
AjiI CACGTC 1 cut(s) 702
AjnI CCWGG 2 cut(s) 1266, 2334
AjuI GAANNNNNNNTTGG 8 cut(s) 56, 88, 341, 373, 1067, 1099, 1221, 1253
Alw21I GWGCWC 1 cut(s) 2224
Alw26I GTCTC 3 cut(s) 220, 1462, 2110
Alw44I GTGCAC 1 cut(s) 2220
AlwI GGATC 4 cut(s) 287, 373, 843, 2039
AoxI GGCC 7 cut(s) 39, 669, 680, 1345, 1723, 1789, 2127
ApaLI GTGCAC 1 cut(s) 2220
ApeKI GCWGC 6 cut(s) 27, 30, 33, 1163, 1878, 2040
ApoI RAATTY 1 cut(s) 628
ArsI GACNNNNNNTTYG 2 cut(s) 410, 442
AseI ATTAAT 5 cut(s) 1232, 1337, 1578, 1971, 2358
AspLEI GCGC 3 cut(s) 2025, 2091, 2277
AspS9I GGNCC 4 cut(s) 39, 681, 1428, 1723
AsuC2I CCSGG 1 cut(s) 673
AsuHPI GGTGA 5 cut(s) 292, 466, 857, 1302, 1373
AvaII GGWCC 1 cut(s) 1428
AxyI CCTNAGG 1 cut(s) 479
BaeGI GKGCMC 1 cut(s) 2224
BaeI ACNNNNGTAYC 2 cut(s) 806, 839
BalI TGGCCA 1 cut(s) 1347
BbsI GAAGAC 3 cut(s) 2102, 2168, 2439
Bbv12I GWGCWC 1 cut(s) 2224
BbvCI CCTCAGC 1 cut(s) 636
BbvI GCAGC 6 cut(s) 39, 42, 45, 1150, 1890, 2027
BceAI ACGGC 1 cut(s) 2489
BcgI CGANNNNNNTGC 2 cut(s) 1261, 1295
BciT130I CCWGG 2 cut(s) 1268, 2336
BciVI GTATCC 1 cut(s) 2401
BclI TGATCA 4 cut(s) 393, 1420, 1758, 2073
BcnI CCSGG 1 cut(s) 673
BcoDI GTCTC 3 cut(s) 220, 1462, 2110
BfaI CTAG 5 cut(s) 1052, 1062, 1314, 1472, 1997
BfmI CTRYAG 2 cut(s) 1432, 2512
BfoI RGCGCY 1 cut(s) 2278
BfrI CTTAAG 3 cut(s) 1502, 2018, 2579
BfuAI ACCTGC 2 cut(s) 1349, 2409
BfuI GTATCC 1 cut(s) 2401
BglII AGATCT 1 cut(s) 2188
BisI GCNGC 9 cut(s) 28, 31, 34, 680, 770, 1164, 1879, 2041, 2394
BlsI GCNGC 9 cut(s) 29, 32, 35, 681, 771, 1165, 1880, 2042, 2395
Bme1390I CCNGG 3 cut(s) 673, 1268, 2336
Bme18I GGWCC 1 cut(s) 1428
BmgBI CACGTC 1 cut(s) 702
BmgT120I GGNCC 4 cut(s) 39, 681, 1428, 1723
BmiI GGNNCC 2 cut(s) 1101, 1416
BmrFI CCNGG 3 cut(s) 673, 1268, 2336
BmrI ACTGGG 1 cut(s) 722
BmsI GCATC 6 cut(s) 546, 1281, 1573, 1596, 1678, 2591
BmuI ACTGGG 1 cut(s) 722
BpiI GAAGAC 3 cut(s) 2102, 2168, 2439
BpmI CTGGAG 1 cut(s) 581
Bpu10I CCTNAGC 1 cut(s) 636
BpuEI CTTGAG 1 cut(s) 2116
BpuMI CCSGG 1 cut(s) 673
BsaAI YACGTR 1 cut(s) 1326
BsaBI GATNNNNATC 2 cut(s) 2343, 2618
BsaHI GRCGYC 1 cut(s) 420
BsaJI CCNNGG 1 cut(s) 1650
BsaWI WCCGGW 1 cut(s) 1837
BsaXI ACNNNNNCTCC 5 cut(s) 33, 1079, 1109, 1697, 1727
Bsc4I CCNNNNNNNGG 2 cut(s) 678, 1273
Bse1I ACTGG 4 cut(s) 107, 281, 717, 1704
Bse21I CCTNAGG 1 cut(s) 479
Bse3DI GCAATG 2 cut(s) 963, 1277
Bse8I GATNNNNATC 2 cut(s) 2343, 2618
BseBI CCWGG 2 cut(s) 1268, 2336
BseDI CCNNGG 1 cut(s) 1650
BseGI GGATG 7 cut(s) 141, 739, 886, 1611, 1693, 2428, 2647
BseJI GATNNNNATC 2 cut(s) 2343, 2618
BseLI CCNNNNNNNGG 2 cut(s) 678, 1273
BseMI GCAATG 2 cut(s) 963, 1277
BseMII CTCAG 4 cut(s) 493, 627, 2598, 2666
BseNI ACTGG 4 cut(s) 107, 281, 717, 1704
BseRI GAGGAG 5 cut(s) 19, 208, 320, 332, 2495
BseSI GKGCMC 1 cut(s) 2224
BseXI GCAGC 6 cut(s) 39, 42, 45, 1150, 1890, 2027
BseYI CCCAGC 2 cut(s) 23, 2330
BshFI GGCC 7 cut(s) 41, 671, 682, 1347, 1725, 1791, 2129
BsiHKAI GWGCWC 1 cut(s) 2224
BsiSI CCGG 2 cut(s) 672, 1838
BslFI GGGAC 2 cut(s) 1796, 2004
BslI CCNNNNNNNGG 2 cut(s) 678, 1273
BsmAI GTCTC 3 cut(s) 220, 1462, 2110
BsmFI GGGAC 2 cut(s) 1796, 2004
BsnI GGCC 7 cut(s) 41, 671, 682, 1347, 1725, 1791, 2129
Bsp1286I GDGCHC 1 cut(s) 2224
BspANI GGCC 7 cut(s) 41, 671, 682, 1347, 1725, 1791, 2129
BspCNI CTCAG 4 cut(s) 492, 628, 2599, 2665
BspLI GGNNCC 2 cut(s) 1101, 1416
BspMI ACCTGC 2 cut(s) 1349, 2409
BspPI GGATC 4 cut(s) 287, 373, 843, 2039
BspTI CTTAAG 3 cut(s) 1502, 2018, 2579
BsrDI GCAATG 2 cut(s) 963, 1277
BsrI ACTGG 4 cut(s) 107, 281, 717, 1704
BssECI CCNNGG 1 cut(s) 1650
BssNAI GTATAC 1 cut(s) 804
BssNI GRCGYC 1 cut(s) 420
BssT1I CCWWGG 1 cut(s) 1650
Bst1107I GTATAC 1 cut(s) 804
Bst2UI CCWGG 2 cut(s) 1268, 2336
Bst6I CTCTTC 3 cut(s) 230, 431, 1890
BstACI GRCGYC 1 cut(s) 420
BstAFI CTTAAG 3 cut(s) 1502, 2018, 2579
BstBAI YACGTR 1 cut(s) 1326
BstC8I GCNNGC 5 cut(s) 669, 1284, 1734, 2038, 2642
BstDEI CTNAG 5 cut(s) 479, 636, 1287, 2607, 2652
BstF5I GGATG 7 cut(s) 141, 739, 886, 1611, 1693, 2428, 2647
BstH2I RGCGCY 1 cut(s) 2278
BstHHI GCGC 3 cut(s) 2025, 2091, 2277
BstMAI GTCTC 3 cut(s) 220, 1462, 2110
BstMWI GCNNNNNNNGC 3 cut(s) 33, 1160, 1283
BstNI CCWGG 2 cut(s) 1268, 2336
BstNSI RCATGY 3 cut(s) 1638, 1736, 2029
BstSCI CCNGG 3 cut(s) 671, 1266, 2334
BstSFI CTRYAG 2 cut(s) 1432, 2512
BstSLI GKGCMC 1 cut(s) 2224
BstSNI TACGTA 1 cut(s) 1326
BstV1I GCAGC 6 cut(s) 39, 42, 45, 1150, 1890, 2027
BstV2I GAAGAC 3 cut(s) 2102, 2168, 2439
BstX2I RGATCY 2 cut(s) 378, 2188
BstYI RGATCY 2 cut(s) 378, 2188
BstZ17I GTATAC 1 cut(s) 804
Bsu36I CCTNAGG 1 cut(s) 479
BsuI GTATCC 1 cut(s) 2401
BsuRI GGCC 7 cut(s) 41, 671, 682, 1347, 1725, 1791, 2129
BtgZI GCGATG 1 cut(s) 1286
BtrI CACGTC 1 cut(s) 702
BtsCI GGATG 7 cut(s) 141, 739, 886, 1611, 1693, 2428, 2647
BtsI GCAGTG 1 cut(s) 81
BtsIMutI CAGTG 5 cut(s) 81, 748, 1348, 1411, 1430
BveI ACCTGC 2 cut(s) 1349, 2409
Cac8I GCNNGC 5 cut(s) 669, 1284, 1734, 2038, 2642
CfoI GCGC 3 cut(s) 2025, 2091, 2277
Cfr13I GGNCC 4 cut(s) 39, 681, 1428, 1723
CseI GACGC 2 cut(s) 428, 1738
Csp6I GTAC 3 cut(s) 1222, 1719, 1957
CviQI GTAC 3 cut(s) 1222, 1719, 1957
DdeI CTNAG 5 cut(s) 479, 636, 1287, 2607, 2652
DraI TTTAAA 1 cut(s) 537
DraIII CACNNNGTG 1 cut(s) 1316
EaeI YGGCCR 2 cut(s) 1345, 1789
Eam1104I CTCTTC 3 cut(s) 230, 431, 1890
EarI CTCTTC 3 cut(s) 230, 431, 1890
EciI GGCGGA 2 cut(s) 848, 2335
Eco105I TACGTA 1 cut(s) 1326
Eco130I CCWWGG 1 cut(s) 1650
Eco47I GGWCC 1 cut(s) 1428
Eco57I CTGAAG 1 cut(s) 1322
Eco81I CCTNAGG 1 cut(s) 479
EcoO109I RGGNCCY 1 cut(s) 39
EcoRII CCWGG 2 cut(s) 1266, 2334
EcoT14I CCWWGG 1 cut(s) 1650
EcoT22I ATGCAT 2 cut(s) 1126, 1873
ErhI CCWWGG 1 cut(s) 1650
FalI AAGNNNNNCTT 2 cut(s) 449, 481
FaqI GGGAC 2 cut(s) 1796, 2004
FauNDI CATATG 4 cut(s) 1767, 1978, 2239, 2307
FbaI TGATCA 4 cut(s) 393, 1420, 1758, 2073
FblI GTMKAC 1 cut(s) 803
Fnu4HI GCNGC 9 cut(s) 28, 31, 34, 680, 770, 1164, 1879, 2041, 2394
FokI GGATG 7 cut(s) 128, 746, 893, 1618, 1700, 2435, 2634
Fsp4HI GCNGC 9 cut(s) 28, 31, 34, 680, 770, 1164, 1879, 2041, 2394
FspBI CTAG 5 cut(s) 1052, 1062, 1314, 1472, 1997
GlaI GCGC 3 cut(s) 2024, 2090, 2276
GluI GCNGC 9 cut(s) 28, 31, 34, 680, 770, 1164, 1879, 2041, 2394
GsaI CCCAGC 2 cut(s) 27, 2334
GsuI CTGGAG 1 cut(s) 581
HaeII RGCGCY 1 cut(s) 2278
HaeIII GGCC 7 cut(s) 41, 671, 682, 1347, 1725, 1791, 2129
HapII CCGG 2 cut(s) 672, 1838
HgaI GACGC 2 cut(s) 428, 1738
HhaI GCGC 3 cut(s) 2025, 2091, 2277
Hin1I GRCGYC 1 cut(s) 420
Hin6I GCGC 3 cut(s) 2023, 2089, 2275
HinP1I GCGC 3 cut(s) 2023, 2089, 2275
HincII GTYRAC 2 cut(s) 890, 1953
HindII GTYRAC 2 cut(s) 890, 1953
HindIII AAGCTT 3 cut(s) 2134, 2246, 2642
HinfI GANTC 6 cut(s) 808, 1190, 1496, 1946, 2000, 2444
HpaII CCGG 2 cut(s) 672, 1838
HphI GGTGA 5 cut(s) 292, 466, 857, 1302, 1373
Hpy188I TCNGA 8 cut(s) 103, 786, 813, 840, 952, 1302, 2608, 2655
Hpy188III TCNNGA 2 cut(s) 1418, 2071
Hpy99I CGWCG 2 cut(s) 119, 371
HpyCH4IV ACGT 6 cut(s) 701, 1220, 1325, 1842, 1955, 1984
HpyF10VI GCNNNNNNNGC 3 cut(s) 33, 1160, 1283
HpyF3I CTNAG 5 cut(s) 479, 636, 1287, 2607, 2652
HpySE526I ACGT 6 cut(s) 701, 1220, 1325, 1842, 1955, 1984
Hsp92I GRCGYC 1 cut(s) 420
HspAI GCGC 3 cut(s) 2023, 2089, 2275
Ksp22I TGATCA 4 cut(s) 393, 1420, 1758, 2073
LmnI GCTCC 3 cut(s) 1151, 2526, 2626
Lsp1109I GCAGC 6 cut(s) 39, 42, 45, 1150, 1890, 2027
LweI GCATC 6 cut(s) 546, 1281, 1573, 1596, 1678, 2591
MaeI CTAG 5 cut(s) 1052, 1062, 1314, 1472, 1997
MaeII ACGT 6 cut(s) 701, 1220, 1325, 1842, 1955, 1984
MaeIII GTNAC 4 cut(s) 1111, 1531, 1556, 1622
MfeI CAATTG 2 cut(s) 157, 1167
MflI RGATCY 2 cut(s) 378, 2188
MhlI GDGCHC 1 cut(s) 2224
MlsI TGGCCA 1 cut(s) 1347
MluNI TGGCCA 1 cut(s) 1347
MlyI GAGTC 1 cut(s) 2453
MmeI TCCRAC 2 cut(s) 764, 1065
Mox20I TGGCCA 1 cut(s) 1347
Mph1103I ATGCAT 2 cut(s) 1126, 1873
MscI TGGCCA 1 cut(s) 1347
MslI CAYNNNNRTG 2 cut(s) 389, 2217
Msp20I TGGCCA 1 cut(s) 1347
MspCI CTTAAG 3 cut(s) 1502, 2018, 2579
MspI CCGG 2 cut(s) 672, 1838
MspR9I CCNGG 3 cut(s) 673, 1268, 2336
MunI CAATTG 2 cut(s) 157, 1167
MvaI CCWGG 2 cut(s) 1268, 2336
MwoI GCNNNNNNNGC 3 cut(s) 33, 1160, 1283
NciI CCSGG 1 cut(s) 673
NdeI CATATG 4 cut(s) 1767, 1978, 2239, 2307
NlaIV GGNNCC 2 cut(s) 1101, 1416
NmuCI GTSAC 2 cut(s) 1111, 1531
NsiI ATGCAT 2 cut(s) 1126, 1873
NspI RCATGY 3 cut(s) 1638, 1736, 2029
PaeI GCATGC 1 cut(s) 1736
PaqCI CACCTGC 1 cut(s) 1349
PcsI WCGNNNNNNNCGW 1 cut(s) 426
PfeI GAWTC 5 cut(s) 808, 1190, 1496, 1946, 2000
PflMI CCANNNNNTGG 1 cut(s) 1273
PkrI GCNGC 9 cut(s) 29, 32, 35, 681, 771, 1165, 1880, 2042, 2395
PleI GAGTC 1 cut(s) 2452
PpsI GAGTC 1 cut(s) 2452
Ppu21I YACGTR 1 cut(s) 1326
PshBI ATTAAT 5 cut(s) 1232, 1337, 1578, 1971, 2358
PsiI TTATAA 1 cut(s) 2252
Psp6I CCWGG 2 cut(s) 1266, 2334
PspFI CCCAGC 2 cut(s) 23, 2330
PspGI CCWGG 2 cut(s) 1266, 2334
PspN4I GGNNCC 2 cut(s) 1101, 1416
PspPI GGNCC 4 cut(s) 39, 681, 1428, 1723
PsuI RGATCY 2 cut(s) 378, 2188
RsaI GTAC 3 cut(s) 1223, 1720, 1958
RsaNI GTAC 3 cut(s) 1222, 1719, 1957
RseI CAYNNNNRTG 2 cut(s) 389, 2217
SatI GCNGC 9 cut(s) 28, 31, 34, 680, 770, 1164, 1879, 2041, 2394
Sau96I GGNCC 4 cut(s) 39, 681, 1428, 1723
SchI GAGTC 1 cut(s) 2453
ScrFI CCNGG 3 cut(s) 673, 1268, 2336
SduI GDGCHC 1 cut(s) 2224
SfaNI GCATC 6 cut(s) 546, 1281, 1573, 1596, 1678, 2591
SfcI CTRYAG 2 cut(s) 1432, 2512
SinI GGWCC 1 cut(s) 1428
SmiMI CAYNNNNRTG 2 cut(s) 389, 2217
SmlI CTYRAG 4 cut(s) 1502, 2018, 2131, 2579
SmoI CTYRAG 4 cut(s) 1502, 2018, 2131, 2579
SnaBI TACGTA 1 cut(s) 1326
SphI GCATGC 1 cut(s) 1736
SspI AATATT 2 cut(s) 1695, 2488
SspMI CTAG 5 cut(s) 1052, 1062, 1314, 1472, 1997
StyD4I CCNGG 3 cut(s) 671, 1266, 2334
StyI CCWWGG 1 cut(s) 1650
TaiI ACGT 6 cut(s) 704, 1223, 1328, 1845, 1958, 1987
TaqI TCGA 4 cut(s) 114, 1216, 1296, 2093
TauI GCSGC 3 cut(s) 682, 772, 2396
TfiI GAWTC 5 cut(s) 808, 1190, 1496, 1946, 2000
TscAI CASTG 5 cut(s) 88, 748, 1355, 1411, 1430
TseFI GTSAC 2 cut(s) 1111, 1531
TseI GCWGC 6 cut(s) 27, 30, 33, 1163, 1878, 2040
Tsp45I GTSAC 2 cut(s) 1111, 1531
TspGWI ACGGA 2 cut(s) 355, 2513
TspRI CASTG 5 cut(s) 88, 748, 1355, 1411, 1430
Van91I CCANNNNNTGG 1 cut(s) 1273
Vha464I CTTAAG 3 cut(s) 1502, 2018, 2579
VneI GTGCAC 1 cut(s) 2220
VpaK11BI GGWCC 1 cut(s) 1428
VspI ATTAAT 5 cut(s) 1232, 1337, 1578, 1971, 2358
XapI RAATTY 1 cut(s) 628
XceI RCATGY 3 cut(s) 1638, 1736, 2029
XmiI GTMKAC 1 cut(s) 803
XspI CTAG 5 cut(s) 1052, 1062, 1314, 1472, 1997
Zsp2I ATGCAT 2 cut(s) 1126, 1873
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.