Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0000528

Physical Location & Seq

Genomic Coordinates Forward (+)

27004527 .. 27004813

Gene Structure 287 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g25190.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 204 bp

ATGCTAATGCAAGGCAAACTTGCACTTCTGGATCTTGCTAGCAGTGAACAAGCATTGGAAACAAACAGCGGAGGCCAAAAATTATGGGATGGAGCAAATATTAACCATGCACTTCTTGCCTTAGCGAACTGCATAAATGCTCTGGGCGAACAGCAAAAGAATGGTCTTGCTTATGTTCCTCATCATATTAGCAAATTGACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000070 GO:0000226 GO:0000278 GO:0000280 GO:0000819 GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005871 GO:0005875 GO:0005929 GO:0006928 GO:0006996 GO:0007010 GO:0007017 GO:0007018 GO:0007019 GO:0007049 GO:0007059 GO:0008150 GO:0008574 GO:0009987 GO:0010938 GO:0015630 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022402 GO:0022411 GO:0030030 GO:0031109 GO:0031122 GO:0032984 GO:0032991 GO:0042623 GO:0042995 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043624 GO:0043933 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0044782 GO:0048285 GO:0051261 GO:0051276 GO:0060404 GO:0061523 GO:0070462 GO:0071840 GO:0097435 GO:0098813 GO:0120025 GO:0120036 GO:0140014 GO:1903008 GO:1903047 GO:1990939

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kinesin

Protein Analysis

68

Amino Acids

7.14

Weight (kDa)

6.23

Isoelectric Point (pI)

32.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000528)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49650
fragaria_vesca	FvH4_1g18770 FvH4_1g18770 FvH4_7g34230
malus_domestica	MD01G1046900.v1.1 MD15G1305400.v1.1 MD16G1282300.v1.1
prunus_persica	Prupe.6G211700_v2.0.a1 Prupe.6G211700_v2.0.a1
pyrus_communis	pycom01g07280 pycom15g26860 pycom16g25190 pycom16g25200
rosa_chinensis	RchiOBHm_Chr1g0351151 RchiOBHm_Chr2g0109641 RchiOBHm_Chr4g0386971 RchiOBHm_Chr4g0413031 RchiOBHm_Chr4g0429541
rosa_laevigata	RLG00000007037 RLG00000009264 RLG00000009427 RLG00000015442 RLG00000017752 RLG00000017990 RLG00000022570 RLG00000028427
rosa_multiflora	Rmu_sc0000031.1_g000013 Rmu_sc0000332.1_g000058 Rmu_sc0000346.1_g000014 Rmu_sc0000698.1_g000147 Rmu_sc0001152.1_g000047 Rmu_sc0001494.1_g000003 Rmu_sc0002254.1_g000001 Rmu_sc0002531.1_g000001 Rmu_sc0002717.1_g000016 Rmu_sc0002717.1_g000017 Rmu_sc0003220.1_g000024 Rmu_sc0005016.1_g000007 Rmu_sc0005608.1_g000020 Rmu_sc0010686.1_g000003 Rmu_sc0011012.1_g000011 Rmu_sc0021503.1_g000001
rosa_roxburghii	Rroxscaffold_2G00082300 Rroxscaffold_2G00099190 Rroxscaffold_2G00129660 Rroxscaffold_2G00134070 Rroxscaffold_3G00236170 Rroxscaffold_5G00346460 Rroxscaffold_7G00156600 Rroxscaffold_7G00205430
rosa_rugosa	Rorug01G0267800 Rorug02G0020700 Rorug02G0020700 Rorug02G0161500 Rorug02G0384900 Rorug05G0567000
rosa_samantha	Rh1AG062400 Rh1AG132200 Rh1AG231500 Rh1CG126100 Rh1CG184600 Rh1CG215600 Rh1CG237400 Rh2AG213700 Rh2BG068400 Rh2BG224100 Rh2BG239600 Rh2CG069600 Rh2CG216000 Rh2CG585300 Rh2DG067600 Rh2DG219200 Rh4AG177200 Rh5AG509600 Rh5BG290500 Rh5BG328900 Rh5DG300300 Rh5DG340100 Rh6BG103200 Rh7DG421500
rosa_wichuraiana	Rw1G006030 Rw1G006580 Rw2G006320 Rw5G004390 Rw5G029130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	69
AclWI	GGATC	1 cut(s)	39
AlwI	GGATC	1 cut(s)	39
AoxI	GGCC	1 cut(s)	73
ArsI	GACNNNNNNTTYG	2 cut(s)	148, 180
AsuNHI	GCTAGC	1 cut(s)	38
BccI	CCATC	1 cut(s)	83
BfaI	CTAG	1 cut(s)	39
BmtI	GCTAGC	1 cut(s)	42
Bpu10I	CCTNAGC	1 cut(s)	121
BseGI	GGATG	1 cut(s)	94
BshFI	GGCC	1 cut(s)	75
BsnI	GGCC	1 cut(s)	75
Bsp143I	GATC	1 cut(s)	31
BspACI	CCGC	1 cut(s)	69
BspANI	GGCC	1 cut(s)	75
BspOI	GCTAGC	1 cut(s)	42
BspPI	GGATC	1 cut(s)	39
BssMI	GATC	1 cut(s)	31
BstAPI	GCANNNNNTGC	1 cut(s)	116
BstC8I	GCNNGC	1 cut(s)	40
BstDEI	CTNAG	1 cut(s)	121
BstF5I	GGATG	1 cut(s)	94
BstKTI	GATC	1 cut(s)	34
BstMBI	GATC	1 cut(s)	31
BstMWI	GCNNNNNNNGC	1 cut(s)	116
BstX2I	RGATCY	1 cut(s)	31
BstYI	RGATCY	1 cut(s)	31
BsuRI	GGCC	1 cut(s)	75
BtsCI	GGATG	1 cut(s)	94
BtsI	GCAGTG	1 cut(s)	49
BtsIMutI	CAGTG	1 cut(s)	49
Cac8I	GCNNGC	1 cut(s)	40
CviAII	CATG	2 cut(s)	107, 201
CviJI	RGCY	1 cut(s)	75
CviKI_1	RGCY	1 cut(s)	75
DdeI	CTNAG	1 cut(s)	121
DpnI	GATC	1 cut(s)	33
DpnII	GATC	1 cut(s)	31
FaeI	CATG	2 cut(s)	110, 204
FaiI	YATR	6 cut(s)	85, 108, 134, 174, 186, 202
FalI	AAGNNNNNCTT	1 cut(s)	35
FatI	CATG	2 cut(s)	106, 200
FokI	GGATG	1 cut(s)	101
FspBI	CTAG	1 cut(s)	39
HaeIII	GGCC	1 cut(s)	75
Hin1II	CATG	2 cut(s)	110, 204
Hpy166II	GTNNAC	1 cut(s)	47
Hpy188III	TCNNGA	1 cut(s)	29
Hpy8I	GTNNAC	1 cut(s)	47
HpyCH4V	TGCA	4 cut(s)	10, 23, 110, 132
HpyF10VI	GCNNNNNNNGC	1 cut(s)	116
HpyF3I	CTNAG	1 cut(s)	121
Hsp92II	CATG	2 cut(s)	110, 204
Kzo9I	GATC	1 cut(s)	31
LmnI	GCTCC	1 cut(s)	92
LpnPI	CCDG	2 cut(s)	14, 128
MaeI	CTAG	1 cut(s)	39
MalI	GATC	1 cut(s)	33
MboI	GATC	1 cut(s)	31
MflI	RGATCY	1 cut(s)	31
MluCI	AATT	2 cut(s)	80, 194
MnlI	CCTC	2 cut(s)	65, 189
MseI	TTAA	1 cut(s)	102
MspA1I	CMGCKG	1 cut(s)	69
MwoI	GCNNNNNNNGC	1 cut(s)	116
NdeII	GATC	1 cut(s)	31
NheI	GCTAGC	1 cut(s)	38
NlaIII	CATG	2 cut(s)	110, 204
PsuI	RGATCY	1 cut(s)	31
SaqAI	TTAA	1 cut(s)	102
Sau3AI	GATC	1 cut(s)	31
Sse9I	AATT	2 cut(s)	80, 194
SsiI	CCGC	1 cut(s)	69
SspI	AATATT	1 cut(s)	100
SspMI	CTAG	1 cut(s)	39
TasI	AATT	2 cut(s)	80, 194
Tru1I	TTAA	1 cut(s)	102
Tru9I	TTAA	1 cut(s)	102
TscAI	CASTG	1 cut(s)	49
TspRI	CASTG	1 cut(s)	49
XspI	CTAG	1 cut(s)	39

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.