Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0000528

Physical Location & Seq

Genomic Coordinates Reverse (-)

12226824 .. 12238555

Gene Structure 11732 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G006030.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1662 bp

GGACCCAAGAAAGGAAGACGGGAAAGAAAAGATGGCAGTGACAACCATAAGCAAAAAAGAAACAAAGGTGAGATACAAAACAATGAGACAGAAATTATCATATCATCATCCTCATATGGACGGACTACTTGCGTCAAATGGTGGCGGCAAGCAGAGAAGATTGAGGTGCAATCGTTAGAAGAGCTTCCAAAGCAGCTATTCCTGGAAATATATGAGCTTTCTCAAGCAAAGGATGTCTACACAAAATGCATATCGTCCGTGATCTTTGGGGTTGTTCATGGTCTCAATGCAACTGTGTTTGCGTATGGTTCTACCGGAAGTGGTAAAACATATACAATGGTGGGGACACAAAATGATCCCGGGCTCATGGTTCTCAGTTTGCATACAATATTTGATCTGATAAAAAAGGACAAGAGCTCTGATGAATTTGAAGTTACCTGCTCCTATCTTGAACTCTATAACGAAGTTATCTATGATTTGCTTGAAAAGTCATCCGGCCATTTGGAACTCAGAGAGGATCCAGAGCAAGGAATCATTGTTGCTGGCCTTAGGTGTATAAAGGTTCATTCAGCTGATAAGATCCTTGAACTCTTAAACGTGGGGAACAGCCGACGGAAAACTGAAAGCACGGAGGCTAATGCAACATCTTCTCGCATAAATCAAATACTCTGTAAATCAATAAATGCTTTCGGAAAGAAATCTCAATCCAACTTCAAGGCTGATAAAAGAGGATCAGTCCAGCGGAGTGCCCGGCCAGGCCTCGCCGGCGATGCAACCGCTCAAATATTGGAAAGGATGCAGCAGTTGGAGCAAAGGTTAATCCGCGCGGAATCAGGCACCCCAGCGCCAATTTCAAATCCACTTTTCGCGTCCAGGCCAGGACCGTTCACAGCTGCAATTCTGCAGGCTAAGGATCAACACTACAAGGGAAACGGCCCATCCCATGGGGACAACCACAACAAACAGACAGAATCCTCTCAGCGGGATGATGAAAAAAAGTACATAAAGAAGGAGCCGGTCAATCCAGAAAGCTCATTAAAGGTTGTCAGCATCTCTGACGAGCACTCTGAGCGGACAGTCCGCATAGGCACTCAGTTTGACCCAGAGCTGGTGGCGGAACTCACTCAGTTCCTACGTGACAACGCTACGGTCTTTACCTGGTCATATGCAGACATGCAGAGGCATGAACGGAGCGGAAACACGGTATCCTCCCTTGGAGCAACTTACTCTCGCACTCATCATTGCCGCCAGACGCCTCCGCTATCTGACGTGGCATGCATGTTGGAAGATCTGCTAGAGAAGAAGGTGATAGAGCTCCCAGAATGCAAGCAGCCTGAGGAAATGCATCGTGTCAAGGACCCGAAATACTACAAGTACCACCGGATCGTCATCTCGCACCTGTTGCTGCCCCAAAGGTTGACTCAATTGTTGATGATGAAGGATGGATACTTGTCACTCGGAGGAAGGCACGCAAGAACCCATCGCCATGTTTACCCATTACTCAAGCAAAATGTAAGCAACCACAAGAAAGTAATCAGTGTCTCGAGAAATATGGGACAAGATTTTTCACAGAGAATGGCAATCTTTTCATTCGAATACCCCATGGTGTGGCTTCATCAACAAGAGCCTTTCCCAATAGAGGCAACGAACAAGAAAAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000070 GO:0000226 GO:0000278 GO:0000280 GO:0000819 GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005871 GO:0005875 GO:0005929 GO:0006928 GO:0006996 GO:0007010 GO:0007017 GO:0007018 GO:0007019 GO:0007049 GO:0007059 GO:0008150 GO:0008574 GO:0009987 GO:0010938 GO:0015630 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022402 GO:0022411 GO:0030030 GO:0031109 GO:0031122 GO:0032984 GO:0032991 GO:0042623 GO:0042995 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043624 GO:0043933 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0044782 GO:0048285 GO:0051261 GO:0051276 GO:0060404 GO:0061523 GO:0070462 GO:0071840 GO:0097435 GO:0098813 GO:0120025 GO:0120036 GO:0140014 GO:1903008 GO:1903047 GO:1990939

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kinesin

Protein Analysis

553

Amino Acids

62.82

Weight (kDa)

9.08

Isoelectric Point (pI)

47.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Kinesin	PF00225	73 - 237	1.8e-49	Kinesin motor domain
Microtub_bd	PF16796	88 - 161	2e-15	Microtubule binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000528)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49650
fragaria_vesca	FvH4_1g18770 FvH4_1g18770 FvH4_7g34230
malus_domestica	MD01G1046900.v1.1 MD15G1305400.v1.1 MD16G1282300.v1.1
prunus_persica	Prupe.6G211700_v2.0.a1 Prupe.6G211700_v2.0.a1
pyrus_communis	pycom01g07280 pycom15g26860 pycom16g25190 pycom16g25200
rosa_chinensis	RchiOBHm_Chr1g0351151 RchiOBHm_Chr2g0109641 RchiOBHm_Chr4g0386971 RchiOBHm_Chr4g0413031 RchiOBHm_Chr4g0429541
rosa_laevigata	RLG00000007037 RLG00000009264 RLG00000009427 RLG00000015442 RLG00000017752 RLG00000017990 RLG00000022570 RLG00000028427
rosa_multiflora	Rmu_sc0000031.1_g000013 Rmu_sc0000332.1_g000058 Rmu_sc0000346.1_g000014 Rmu_sc0000698.1_g000147 Rmu_sc0001152.1_g000047 Rmu_sc0001494.1_g000003 Rmu_sc0002254.1_g000001 Rmu_sc0002531.1_g000001 Rmu_sc0002717.1_g000016 Rmu_sc0002717.1_g000017 Rmu_sc0003220.1_g000024 Rmu_sc0005016.1_g000007 Rmu_sc0005608.1_g000020 Rmu_sc0010686.1_g000003 Rmu_sc0011012.1_g000011 Rmu_sc0021503.1_g000001
rosa_roxburghii	Rroxscaffold_2G00082300 Rroxscaffold_2G00099190 Rroxscaffold_2G00129660 Rroxscaffold_2G00134070 Rroxscaffold_3G00236170 Rroxscaffold_5G00346460 Rroxscaffold_7G00156600 Rroxscaffold_7G00205430
rosa_rugosa	Rorug01G0267800 Rorug02G0020700 Rorug02G0020700 Rorug02G0161500 Rorug02G0384900 Rorug05G0567000
rosa_samantha	Rh1AG062400 Rh1AG132200 Rh1AG231500 Rh1CG126100 Rh1CG184600 Rh1CG215600 Rh1CG237400 Rh2AG213700 Rh2BG068400 Rh2BG224100 Rh2BG239600 Rh2CG069600 Rh2CG216000 Rh2CG585300 Rh2DG067600 Rh2DG219200 Rh4AG177200 Rh5AG509600 Rh5BG290500 Rh5BG328900 Rh5DG300300 Rh5DG340100 Rh6BG103200 Rh7DG421500
rosa_wichuraiana	Rw1G006030 Rw1G006580 Rw2G006320 Rw5G004390 Rw5G029130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	446
AccB1I	GGYRCC	1 cut(s)	836
AccB7I	CCANNNNNTGG	2 cut(s)	944, 1608
AccBSI	CCGCTC	3 cut(s)	779, 1072, 1194
AccI	GTMKAC	1 cut(s)	237
AccII	CGCG	3 cut(s)	825, 827, 869
AclWI	GGATC	7 cut(s)	350, 512, 525, 574, 739, 921, 1391
AcoI	YGGCCR	2 cut(s)	496, 752
AcsI	RAATTY	1 cut(s)	425
AcyI	GRCGYC	1 cut(s)	1253
AfaI	GTAC	2 cut(s)	1001, 1376
AfiI	CCNNNNNNNGG	7 cut(s)	11, 527, 944, 981, 1108, 1608, 1639
AgsI	TTSAA	6 cut(s)	431, 452, 485, 587, 715, 855
AjiI	CACGTC	1 cut(s)	1270
AjnI	CCWGG	5 cut(s)	201, 754, 872, 877, 1157
AluBI	AGCT	9 cut(s)	184, 196, 217, 417, 572, 893, 1032, 1108, 1315
AluI	AGCT	9 cut(s)	184, 196, 217, 417, 572, 893, 1032, 1108, 1315
Alw21I	GWGCWC	3 cut(s)	419, 1065, 1317
Alw26I	GTCTC	3 cut(s)	80, 287, 1546
AlwI	GGATC	7 cut(s)	350, 512, 525, 574, 739, 921, 1391
Ama87I	CYCGRG	2 cut(s)	359, 1543
AoxI	GGCC	6 cut(s)	496, 544, 752, 757, 875, 934
ApeKI	GCWGC	5 cut(s)	193, 799, 893, 1330, 1405
ApoI	RAATTY	1 cut(s)	425
Asp700I	GAANNNNTTC	1 cut(s)	183
AspLEI	GCGC	2 cut(s)	827, 847
AspS9I	GGNCC	4 cut(s)	2, 881, 935, 1357
AsuC2I	CCSGG	3 cut(s)	360, 361, 751
AsuHPI	GGTGA	2 cut(s)	80, 1318
AsuII	TTCGAA	1 cut(s)	1593
AvaI	CYCGRG	2 cut(s)	359, 1543
AvaII	GGWCC	3 cut(s)	2, 881, 1357
AxyI	CCTNAGG	2 cut(s)	548, 1335
BaeGI	GKGCMC	1 cut(s)	751
BamHI	GGATCC	1 cut(s)	517
BanI	GGYRCC	1 cut(s)	836
BanII	GRGCYC	3 cut(s)	366, 419, 1317
BarI	GAAGNNNNNNTAC	2 cut(s)	1430, 1462
BbsI	GAAGAC	1 cut(s)	22
Bbv12I	GWGCWC	3 cut(s)	419, 1065, 1317
BbvI	GCAGC	5 cut(s)	205, 811, 880, 1342, 1392
BccI	CCATC	4 cut(s)	26, 946, 1436, 1488
BceAI	ACGGC	1 cut(s)	949
BciT130I	CCWGG	5 cut(s)	203, 756, 874, 879, 1159
BciVI	GTATCC	2 cut(s)	1216, 1439
BcnI	CCSGG	3 cut(s)	360, 361, 751
BcoDI	GTCTC	3 cut(s)	80, 287, 1546
BfaI	CTAG	1 cut(s)	1295
BfmI	CTRYAG	1 cut(s)	902
BfoI	RGCGCY	1 cut(s)	848
BfuAI	ACCTGC	1 cut(s)	446
BfuI	GTATCC	2 cut(s)	1216, 1439
BglI	GCCNNNNNGGC	1 cut(s)	765
BglII	AGATCT	1 cut(s)	1288
BisI	GCNGC	7 cut(s)	146, 194, 800, 894, 1246, 1331, 1406
BlsI	GCNGC	7 cut(s)	147, 195, 801, 895, 1247, 1332, 1407
Bme1390I	CCNGG	8 cut(s)	203, 360, 361, 751, 756, 874, 879, 1159
Bme18I	GGWCC	3 cut(s)	2, 881, 1357
BmeT110I	CYCGRG	2 cut(s)	359, 1543
BmgBI	CACGTC	1 cut(s)	1270
BmgT120I	GGNCC	4 cut(s)	2, 881, 935, 1357
BmiI	GGNNCC	5 cut(s)	4, 519, 838, 1014, 1359
BmrFI	CCNGG	8 cut(s)	203, 360, 361, 751, 756, 874, 879, 1159
BmsI	GCATC	4 cut(s)	760, 786, 1059, 1354
BpiI	GAAGAC	1 cut(s)	22
Bpu10I	CCTNAGC	1 cut(s)	909
Bpu14I	TTCGAA	1 cut(s)	1593
BpuEI	CTTGAG	2 cut(s)	207, 1487
BpuMI	CCSGG	3 cut(s)	360, 361, 751
BsaAI	YACGTR	1 cut(s)	1136
BsaBI	GATNNNNATC	1 cut(s)	1388
BsaHI	GRCGYC	1 cut(s)	1253
BsaI	GGTCTC	1 cut(s)	287
BsaJI	CCNNGG	4 cut(s)	359, 943, 1213, 1602
BsaWI	WCCGGW	2 cut(s)	314, 1380
BsaXI	ACNNNNNCTCC	2 cut(s)	800, 830
Bsc4I	CCNNNNNNNGG	7 cut(s)	11, 527, 944, 981, 1108, 1608, 1639
Bse118I	RCCGGY	2 cut(s)	764, 1015
Bse21I	CCTNAGG	2 cut(s)	548, 1335
Bse3DI	GCAATG	1 cut(s)	1240
Bse8I	GATNNNNATC	1 cut(s)	1388
BseBI	CCWGG	5 cut(s)	203, 756, 874, 879, 1159
BseDI	CCNNGG	4 cut(s)	359, 943, 1213, 1602
BseGI	GGATG	7 cut(s)	107, 238, 491, 801, 938, 991, 1447
BseJI	GATNNNNATC	1 cut(s)	1388
BseLI	CCNNNNNNNGG	7 cut(s)	11, 527, 944, 981, 1108, 1608, 1639
BseMI	GCAATG	1 cut(s)	1240
BseMII	CTCAG	7 cut(s)	388, 523, 992, 1059, 1106, 1139, 1326
BseSI	GKGCMC	1 cut(s)	751
BseXI	GCAGC	5 cut(s)	205, 811, 880, 1342, 1392
BseYI	CCCAGC	1 cut(s)	841
Bsh1236I	CGCG	3 cut(s)	825, 827, 869
BshFI	GGCC	6 cut(s)	498, 546, 754, 759, 877, 936
BshNI	GGYRCC	1 cut(s)	836
BsiHKAI	GWGCWC	3 cut(s)	419, 1065, 1317
BsiHKCI	CYCGRG	2 cut(s)	359, 1543
BsiSI	CCGG	7 cut(s)	315, 360, 495, 751, 765, 1016, 1381
BslFI	GGGAC	3 cut(s)	358, 962, 1569
BslI	CCNNNNNNNGG	7 cut(s)	11, 527, 944, 981, 1108, 1608, 1639
BsmAI	GTCTC	3 cut(s)	80, 287, 1546
BsmFI	GGGAC	3 cut(s)	358, 962, 1569
BsmI	GAATGC	1 cut(s)	1328
BsnI	GGCC	6 cut(s)	498, 546, 754, 759, 877, 936
Bso31I	GGTCTC	1 cut(s)	287
BsoBI	CYCGRG	2 cut(s)	359, 1543
Bsp119I	TTCGAA	1 cut(s)	1593
Bsp1286I	GDGCHC	5 cut(s)	366, 419, 751, 1065, 1317
Bsp143I	GATC	9 cut(s)	261, 355, 394, 517, 579, 731, 913, 1288, 1383
Bsp19I	CCATGG	2 cut(s)	943, 1602
BspANI	GGCC	6 cut(s)	498, 546, 754, 759, 877, 936
BspCNI	CTCAG	7 cut(s)	387, 522, 991, 1060, 1105, 1138, 1327
BspFNI	CGCG	3 cut(s)	825, 827, 869
BspLI	GGNNCC	5 cut(s)	4, 519, 838, 1014, 1359
BspMAI	CTGCAG	1 cut(s)	906
BspMI	ACCTGC	1 cut(s)	446
BspPI	GGATC	7 cut(s)	350, 512, 525, 574, 739, 921, 1391
BspQI	GCTCTTC	1 cut(s)	174
BspT104I	TTCGAA	1 cut(s)	1593
BspT107I	GGYRCC	1 cut(s)	836
BspTNI	GGTCTC	1 cut(s)	287
BsrBI	CCGCTC	3 cut(s)	779, 1072, 1194
BsrDI	GCAATG	1 cut(s)	1240
BsrFI	RCCGGY	2 cut(s)	764, 1015
BssAI	RCCGGY	2 cut(s)	764, 1015
BssECI	CCNNGG	4 cut(s)	359, 943, 1213, 1602
BssMI	GATC	9 cut(s)	261, 355, 394, 517, 579, 731, 913, 1288, 1383
BssNI	GRCGYC	1 cut(s)	1253
BssT1I	CCWWGG	3 cut(s)	943, 1213, 1602
Bst2UI	CCWGG	5 cut(s)	203, 756, 874, 879, 1159
Bst4CI	ACNGT	5 cut(s)	295, 885, 1078, 1150, 1204
Bst6I	CTCTTC	1 cut(s)	174
BstACI	GRCGYC	1 cut(s)	1253
BstAPI	GCANNNNNTGC	1 cut(s)	1402
BstBAI	YACGTR	1 cut(s)	1136
BstBI	TTCGAA	1 cut(s)	1593
BstC8I	GCNNGC	7 cut(s)	150, 544, 766, 906, 1276, 1328, 1470
BstDEI	CTNAG	9 cut(s)	374, 509, 548, 909, 978, 1068, 1092, 1125, 1335
BstDSI	CCRYGG	2 cut(s)	943, 1602
BstF5I	GGATG	7 cut(s)	107, 238, 491, 801, 938, 991, 1447
BstFNI	CGCG	3 cut(s)	825, 827, 869
BstH2I	RGCGCY	1 cut(s)	848
BstHHI	GCGC	2 cut(s)	827, 847
BstKTI	GATC	9 cut(s)	264, 358, 397, 520, 582, 734, 916, 1291, 1386
BstMAI	GTCTC	3 cut(s)	80, 287, 1546
BstMBI	GATC	9 cut(s)	261, 355, 394, 517, 579, 731, 913, 1288, 1383
BstMWI	GCNNNNNNNGC	6 cut(s)	190, 765, 770, 808, 1069, 1402
BstNI	CCWGG	5 cut(s)	203, 756, 874, 879, 1159
BstNSI	RCATGY	3 cut(s)	1177, 1278, 1282
BstSCI	CCNGG	8 cut(s)	201, 358, 359, 749, 754, 872, 877, 1157
BstSFI	CTRYAG	1 cut(s)	902
BstSLI	GKGCMC	1 cut(s)	751
BstUI	CGCG	3 cut(s)	825, 827, 869
BstV1I	GCAGC	5 cut(s)	205, 811, 880, 1342, 1392
BstV2I	GAAGAC	1 cut(s)	22
BstX2I	RGATCY	3 cut(s)	517, 579, 1288
BstYI	RGATCY	3 cut(s)	517, 579, 1288
Bsu36I	CCTNAGG	2 cut(s)	548, 1335
BsuI	GTATCC	2 cut(s)	1216, 1439
BsuRI	GGCC	6 cut(s)	498, 546, 754, 759, 877, 936
BtgI	CCRYGG	2 cut(s)	943, 1602
BtgZI	GCGATG	2 cut(s)	783, 1466
BtrI	CACGTC	1 cut(s)	1270
BtsCI	GGATG	7 cut(s)	107, 238, 491, 801, 938, 991, 1447
BtsI	GCAGTG	1 cut(s)	43
BtsIMutI	CAGTG	2 cut(s)	43, 1543
BveI	ACCTGC	1 cut(s)	446
Cac8I	GCNNGC	7 cut(s)	150, 544, 766, 906, 1276, 1328, 1470
CfoI	GCGC	2 cut(s)	827, 847
Cfr10I	RCCGGY	2 cut(s)	764, 1015
Cfr13I	GGNCC	4 cut(s)	2, 881, 935, 1357
Cfr9I	CCCGGG	1 cut(s)	359
CseI	GACGC	3 cut(s)	121, 858, 1261
CsiI	ACCWGGT	1 cut(s)	1157
Csp6I	GTAC	2 cut(s)	1000, 1375
CviAII	CATG	9 cut(s)	278, 367, 944, 1174, 1184, 1275, 1279, 1487, 1603
CviQI	GTAC	2 cut(s)	1000, 1375
DdeI	CTNAG	9 cut(s)	374, 509, 548, 909, 978, 1068, 1092, 1125, 1335
DpnI	GATC	9 cut(s)	263, 357, 396, 519, 581, 733, 915, 1290, 1385
DpnII	GATC	9 cut(s)	261, 355, 394, 517, 579, 731, 913, 1288, 1383
EaeI	YGGCCR	2 cut(s)	496, 752
Eam1104I	CTCTTC	1 cut(s)	174
EarI	CTCTTC	1 cut(s)	174
EciI	GGCGGA	1 cut(s)	1130
Ecl136II	GAGCTC	2 cut(s)	417, 1315
Eco130I	CCWWGG	3 cut(s)	943, 1213, 1602
Eco147I	AGGCCT	1 cut(s)	759
Eco24I	GRGCYC	3 cut(s)	366, 419, 1317
Eco31I	GGTCTC	1 cut(s)	287
Eco47I	GGWCC	3 cut(s)	2, 881, 1357
Eco53kI	GAGCTC	2 cut(s)	417, 1315
Eco81I	CCTNAGG	2 cut(s)	548, 1335
Eco88I	CYCGRG	2 cut(s)	359, 1543
EcoICRI	GAGCTC	2 cut(s)	417, 1315
EcoO109I	RGGNCCY	1 cut(s)	1357
EcoRII	CCWGG	5 cut(s)	201, 754, 872, 877, 1157
EcoT14I	CCWWGG	3 cut(s)	943, 1213, 1602
EcoT22I	ATGCAT	3 cut(s)	251, 1280, 1347
EcoT38I	GRGCYC	3 cut(s)	366, 419, 1317
ErhI	CCWWGG	3 cut(s)	943, 1213, 1602
FaeI	CATG	9 cut(s)	281, 370, 947, 1177, 1187, 1278, 1282, 1490, 1606
FaqI	GGGAC	3 cut(s)	358, 962, 1569
FatI	CATG	9 cut(s)	277, 366, 943, 1173, 1183, 1274, 1278, 1486, 1602
FauI	CCCGC	1 cut(s)	975
FauNDI	CATATG	2 cut(s)	115, 1165
FblI	GTMKAC	1 cut(s)	237
Fnu4HI	GCNGC	7 cut(s)	146, 194, 800, 894, 1246, 1331, 1406
FokI	GGATG	7 cut(s)	94, 245, 478, 808, 925, 998, 1454
FriOI	GRGCYC	3 cut(s)	366, 419, 1317
Fsp4HI	GCNGC	7 cut(s)	146, 194, 800, 894, 1246, 1331, 1406
FspBI	CTAG	1 cut(s)	1295
GlaI	GCGC	2 cut(s)	826, 846
GluI	GCNGC	7 cut(s)	146, 194, 800, 894, 1246, 1331, 1406
GsaI	CCCAGC	1 cut(s)	845
HaeII	RGCGCY	1 cut(s)	848
HaeIII	GGCC	6 cut(s)	498, 546, 754, 759, 877, 936
HapII	CCGG	7 cut(s)	315, 360, 495, 751, 765, 1016, 1381
HgaI	GACGC	3 cut(s)	121, 858, 1261
HhaI	GCGC	2 cut(s)	827, 847
Hin1I	GRCGYC	1 cut(s)	1253
Hin1II	CATG	9 cut(s)	281, 370, 947, 1177, 1187, 1278, 1282, 1490, 1606
Hin6I	GCGC	2 cut(s)	825, 845
HinP1I	GCGC	2 cut(s)	825, 845
HincII	GTYRAC	1 cut(s)	1419
HindII	GTYRAC	1 cut(s)	1419
HinfI	GANTC	4 cut(s)	531, 830, 971, 1420
HpaII	CCGG	7 cut(s)	315, 360, 495, 751, 765, 1016, 1381
HphI	GGTGA	2 cut(s)	80, 1318
Hpy166II	GTNNAC	4 cut(s)	238, 888, 1419, 1492
Hpy188I	TCNGA	8 cut(s)	399, 421, 512, 692, 1057, 1069, 1267, 1460
Hpy188III	TCNNGA	5 cut(s)	449, 521, 1025, 1543, 1545
Hpy8I	GTNNAC	4 cut(s)	238, 888, 1419, 1492
Hpy99I	CGWCG	1 cut(s)	615
HpyAV	CCTTC	4 cut(s)	1003, 1297, 1432, 1458
HpyCH4III	ACNGT	5 cut(s)	295, 885, 1078, 1150, 1204
HpyCH4IV	ACGT	3 cut(s)	597, 1135, 1269
HpyF10VI	GCNNNNNNNGC	6 cut(s)	190, 765, 770, 808, 1069, 1402
HpyF3I	CTNAG	9 cut(s)	374, 509, 548, 909, 978, 1068, 1092, 1125, 1335
HpySE526I	ACGT	3 cut(s)	597, 1135, 1269
Hsp92I	GRCGYC	1 cut(s)	1253
Hsp92II	CATG	9 cut(s)	281, 370, 947, 1177, 1187, 1278, 1282, 1490, 1606
HspAI	GCGC	2 cut(s)	825, 845
KroI	GCCGGC	1 cut(s)	764
KroNI	GCCGGC	1 cut(s)	766
Kzo9I	GATC	9 cut(s)	261, 355, 394, 517, 579, 731, 913, 1288, 1383
LguI	GCTCTTC	1 cut(s)	174
LmnI	GCTCC	6 cut(s)	446, 808, 1012, 1191, 1217, 1320
Lsp1109I	GCAGC	5 cut(s)	205, 811, 880, 1342, 1392
LweI	GCATC	4 cut(s)	760, 786, 1059, 1354
MabI	ACCWGGT	1 cut(s)	1157
MaeI	CTAG	1 cut(s)	1295
MaeII	ACGT	3 cut(s)	597, 1135, 1269
MaeIII	GTNAC	4 cut(s)	38, 433, 1136, 1452
MalI	GATC	9 cut(s)	263, 357, 396, 519, 581, 733, 915, 1290, 1385
MbiI	CCGCTC	3 cut(s)	779, 1072, 1194
MboI	GATC	9 cut(s)	261, 355, 394, 517, 579, 731, 913, 1288, 1383
MboII	GAAGA	6 cut(s)	27, 169, 191, 639, 1298, 1312
MfeI	CAATTG	1 cut(s)	1424
MflI	RGATCY	3 cut(s)	517, 579, 1288
MhlI	GDGCHC	5 cut(s)	366, 419, 751, 1065, 1317
MluCI	AATT	5 cut(s)	93, 425, 849, 897, 1424
MlyI	GAGTC	1 cut(s)	1414
MmeI	TCCRAC	3 cut(s)	732, 786, 1263
Mph1103I	ATGCAT	3 cut(s)	251, 1280, 1347
MreI	CGCCGGCG	1 cut(s)	764
MroNI	GCCGGC	1 cut(s)	764
MroXI	GAANNNNTTC	1 cut(s)	183
MseI	TTAA	3 cut(s)	593, 818, 1037
MslI	CAYNNNNRTG	1 cut(s)	1485
MspA1I	CMGCKG	4 cut(s)	572, 742, 893, 982
MspI	CCGG	7 cut(s)	315, 360, 495, 751, 765, 1016, 1381
MspR9I	CCNGG	8 cut(s)	203, 360, 361, 751, 756, 874, 879, 1159
MunI	CAATTG	1 cut(s)	1424
Mva1269I	GAATGC	1 cut(s)	1328
MvaI	CCWGG	5 cut(s)	203, 756, 874, 879, 1159
MvnI	CGCG	3 cut(s)	825, 827, 869
MwoI	GCNNNNNNNGC	6 cut(s)	190, 765, 770, 808, 1069, 1402
NaeI	GCCGGC	1 cut(s)	766
NciI	CCSGG	3 cut(s)	360, 361, 751
NcoI	CCATGG	2 cut(s)	943, 1602
NdeI	CATATG	2 cut(s)	115, 1165
NdeII	GATC	9 cut(s)	261, 355, 394, 517, 579, 731, 913, 1288, 1383
NgoMIV	GCCGGC	1 cut(s)	764
NlaIII	CATG	9 cut(s)	281, 370, 947, 1177, 1187, 1278, 1282, 1490, 1606
NlaIV	GGNNCC	5 cut(s)	4, 519, 838, 1014, 1359
NmuCI	GTSAC	3 cut(s)	38, 1136, 1452
NsiI	ATGCAT	3 cut(s)	251, 1280, 1347
NspI	RCATGY	3 cut(s)	1177, 1278, 1282
NspV	TTCGAA	1 cut(s)	1593
PaeI	GCATGC	1 cut(s)	1278
PaeR7I	CTCGAG	1 cut(s)	1543
PceI	AGGCCT	1 cut(s)	759
PciSI	GCTCTTC	1 cut(s)	174
PctI	GAATGC	1 cut(s)	1328
PdiI	GCCGGC	1 cut(s)	766
PdmI	GAANNNNTTC	1 cut(s)	183
PfeI	GAWTC	3 cut(s)	531, 830, 971
PflMI	CCANNNNNTGG	2 cut(s)	944, 1608
PfoI	TCCNGGA	1 cut(s)	201
PkrI	GCNGC	7 cut(s)	147, 195, 801, 895, 1247, 1332, 1407
PleI	GAGTC	1 cut(s)	1414
PpsI	GAGTC	1 cut(s)	1414
Ppu21I	YACGTR	1 cut(s)	1136
PpuMI	RGGWCCY	1 cut(s)	1357
Psp124BI	GAGCTC	2 cut(s)	419, 1317
Psp5II	RGGWCCY	1 cut(s)	1357
Psp6I	CCWGG	5 cut(s)	201, 754, 872, 877, 1157
PspFI	CCCAGC	1 cut(s)	841
PspGI	CCWGG	5 cut(s)	201, 754, 872, 877, 1157
PspN4I	GGNNCC	5 cut(s)	4, 519, 838, 1014, 1359
PspPI	GGNCC	4 cut(s)	2, 881, 935, 1357
PspPPI	RGGWCCY	1 cut(s)	1357
PstI	CTGCAG	1 cut(s)	906
PsuI	RGATCY	3 cut(s)	517, 579, 1288
PvuII	CAGCTG	2 cut(s)	572, 893
RsaI	GTAC	2 cut(s)	1001, 1376
RsaNI	GTAC	2 cut(s)	1000, 1375
RseI	CAYNNNNRTG	1 cut(s)	1485
SacI	GAGCTC	2 cut(s)	419, 1317
SapI	GCTCTTC	1 cut(s)	174
SaqAI	TTAA	3 cut(s)	593, 818, 1037
SatI	GCNGC	7 cut(s)	146, 194, 800, 894, 1246, 1331, 1406
Sau3AI	GATC	9 cut(s)	261, 355, 394, 517, 579, 731, 913, 1288, 1383
Sau96I	GGNCC	4 cut(s)	2, 881, 935, 1357
SchI	GAGTC	1 cut(s)	1414
ScrFI	CCNGG	8 cut(s)	203, 360, 361, 751, 756, 874, 879, 1159
SduI	GDGCHC	5 cut(s)	366, 419, 751, 1065, 1317
SexAI	ACCWGGT	1 cut(s)	1157
SfaNI	GCATC	4 cut(s)	760, 786, 1059, 1354
SfcI	CTRYAG	1 cut(s)	902
Sfr274I	CTCGAG	1 cut(s)	1543
SfuI	TTCGAA	1 cut(s)	1593
SgrAI	CRCCGGYG	1 cut(s)	764
SinI	GGWCC	3 cut(s)	2, 881, 1357
SlaI	CTCGAG	1 cut(s)	1543
SmaI	CCCGGG	1 cut(s)	361
SmiMI	CAYNNNNRTG	1 cut(s)	1485
SmlI	CTYRAG	3 cut(s)	222, 1502, 1543
SmoI	CTYRAG	3 cut(s)	222, 1502, 1543
SphI	GCATGC	1 cut(s)	1278
Sse9I	AATT	5 cut(s)	93, 425, 849, 897, 1424
SseBI	AGGCCT	1 cut(s)	759
SspI	AATATT	2 cut(s)	390, 786
SspMI	CTAG	1 cut(s)	1295
SstI	GAGCTC	2 cut(s)	419, 1317
StuI	AGGCCT	1 cut(s)	759
StyD4I	CCNGG	8 cut(s)	201, 358, 359, 749, 754, 872, 877, 1157
StyI	CCWWGG	3 cut(s)	943, 1213, 1602
TaaI	ACNGT	5 cut(s)	295, 885, 1078, 1150, 1204
TaiI	ACGT	3 cut(s)	600, 1138, 1272
TaqI	TCGA	2 cut(s)	1544, 1593
TasI	AATT	5 cut(s)	93, 425, 849, 897, 1424
TatI	WGTACW	1 cut(s)	999
TauI	GCSGC	2 cut(s)	148, 1248
TfiI	GAWTC	3 cut(s)	531, 830, 971
Tru1I	TTAA	3 cut(s)	593, 818, 1037
Tru9I	TTAA	3 cut(s)	593, 818, 1037
TscAI	CASTG	2 cut(s)	43, 1543
TseFI	GTSAC	3 cut(s)	38, 1136, 1452
TseI	GCWGC	5 cut(s)	193, 799, 893, 1330, 1405
Tsp45I	GTSAC	3 cut(s)	38, 1136, 1452
TspDTI	ATGAA	8 cut(s)	266, 438, 554, 1005, 1200, 1451, 1578, 1604
TspGWI	ACGGA	5 cut(s)	136, 247, 628, 644, 1204
TspMI	CCCGGG	1 cut(s)	359
TspRI	CASTG	2 cut(s)	43, 1543
Van91I	CCANNNNNTGG	2 cut(s)	944, 1608
VpaK11BI	GGWCC	3 cut(s)	2, 881, 1357
XapI	RAATTY	1 cut(s)	425
XceI	RCATGY	3 cut(s)	1177, 1278, 1282
XhoI	CTCGAG	1 cut(s)	1543
XmaI	CCCGGG	1 cut(s)	359
XmiI	GTMKAC	1 cut(s)	237
XmnI	GAANNNNTTC	1 cut(s)	183
XspI	CTAG	1 cut(s)	1295
Zsp2I	ATGCAT	3 cut(s)	251, 1280, 1347

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.