Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0000528

Physical Location & Seq

Genomic Coordinates Forward (+)

426904 .. 427545

Gene Structure 642 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00156600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

ATGAAATTCTCACATCTAAAAAGTGACAAGGTTCGAGCAAGAAGCCCCCTACTCCTCACCTGCGAGTTGTGCTCGATTATCCGTTGGATGCAACAACTAAAGAAGCCAACTAGAAAGTTAAGCTTGCAAGAGCTGCAATGGGTAACAACAACCACCGGTCGCCGTGGATTCAAGAAAGATAAGGACCCCCTTAAGTCACTTAGTGCTCAGGGACCCAAGAAAGGAAGACGGGAAAGAAAAGATGGCAGTGACAACCATAAACAAAAAAGAAACAAAGGTGAGATACAAAACAATGAGACAGAAATGATCATATCATCATCCTCATGTGGACGGACTACTTGCGTCAAATGGTGGCGGCAAGCAGAGAAGATTGGTATGTTAGTTGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010467 GO:0010501 GO:0016070 GO:0016072 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022613 GO:0031974 GO:0031981 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0071840 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

129

Amino Acids

14.96

Weight (kDa)

10.4

Isoelectric Point (pI)

47.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000528)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49650
fragaria_vesca	FvH4_1g18770 FvH4_1g18770 FvH4_7g34230
malus_domestica	MD01G1046900.v1.1 MD15G1305400.v1.1 MD16G1282300.v1.1
prunus_persica	Prupe.6G211700_v2.0.a1 Prupe.6G211700_v2.0.a1
pyrus_communis	pycom01g07280 pycom15g26860 pycom16g25190 pycom16g25200
rosa_chinensis	RchiOBHm_Chr1g0351151 RchiOBHm_Chr2g0109641 RchiOBHm_Chr4g0386971 RchiOBHm_Chr4g0413031 RchiOBHm_Chr4g0429541
rosa_laevigata	RLG00000007037 RLG00000009264 RLG00000009427 RLG00000015442 RLG00000017752 RLG00000017990 RLG00000022570 RLG00000028427
rosa_multiflora	Rmu_sc0000031.1_g000013 Rmu_sc0000332.1_g000058 Rmu_sc0000346.1_g000014 Rmu_sc0000698.1_g000147 Rmu_sc0001152.1_g000047 Rmu_sc0001494.1_g000003 Rmu_sc0002254.1_g000001 Rmu_sc0002531.1_g000001 Rmu_sc0002717.1_g000016 Rmu_sc0002717.1_g000017 Rmu_sc0003220.1_g000024 Rmu_sc0005016.1_g000007 Rmu_sc0005608.1_g000020 Rmu_sc0010686.1_g000003 Rmu_sc0011012.1_g000011 Rmu_sc0021503.1_g000001
rosa_roxburghii	Rroxscaffold_2G00082300 Rroxscaffold_2G00099190 Rroxscaffold_2G00129660 Rroxscaffold_2G00134070 Rroxscaffold_3G00236170 Rroxscaffold_5G00346460 Rroxscaffold_7G00156600 Rroxscaffold_7G00205430
rosa_rugosa	Rorug01G0267800 Rorug02G0020700 Rorug02G0020700 Rorug02G0161500 Rorug02G0384900 Rorug05G0567000
rosa_samantha	Rh1AG062400 Rh1AG132200 Rh1AG231500 Rh1CG126100 Rh1CG184600 Rh1CG215600 Rh1CG237400 Rh2AG213700 Rh2BG068400 Rh2BG224100 Rh2BG239600 Rh2CG069600 Rh2CG216000 Rh2CG585300 Rh2DG067600 Rh2DG219200 Rh4AG177200 Rh5AG509600 Rh5BG290500 Rh5BG328900 Rh5DG300300 Rh5DG340100 Rh6BG103200 Rh7DG421500
rosa_wichuraiana	Rw1G006030 Rw1G006580 Rw2G006320 Rw5G004390 Rw5G029130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	68
Acc36I	ACCTGC	1 cut(s)	68
AciI	CCGC	1 cut(s)	355
AcsI	RAATTY	1 cut(s)	5
AdeI	CACNNNGTG	1 cut(s)	203
AfiI	CCNNNNNNNGG	1 cut(s)	221
AflII	CTTAAG	1 cut(s)	191
AgeI	ACCGGT	1 cut(s)	155
AgsI	TTSAA	1 cut(s)	172
AluBI	AGCT	2 cut(s)	123, 133
AluI	AGCT	2 cut(s)	123, 133
Alw21I	GWGCWC	2 cut(s)	74, 208
Alw26I	GTCTC	1 cut(s)	290
ApeKI	GCWGC	1 cut(s)	133
ApoI	RAATTY	1 cut(s)	5
AsiGI	ACCGGT	1 cut(s)	155
AspS9I	GGNCC	2 cut(s)	184, 212
AsuHPI	GGTGA	2 cut(s)	49, 290
AvaII	GGWCC	2 cut(s)	184, 212
BbsI	GAAGAC	1 cut(s)	232
Bbv12I	GWGCWC	2 cut(s)	74, 208
BbvI	GCAGC	1 cut(s)	120
BccI	CCATC	1 cut(s)	236
BceAI	ACGGC	1 cut(s)	147
BclI	TGATCA	1 cut(s)	306
BcoDI	GTCTC	1 cut(s)	290
BfaI	CTAG	1 cut(s)	111
BfrI	CTTAAG	1 cut(s)	191
BfuAI	ACCTGC	1 cut(s)	68
BisI	GCNGC	2 cut(s)	134, 356
BlsI	GCNGC	2 cut(s)	135, 357
Bme18I	GGWCC	2 cut(s)	184, 212
BmgT120I	GGNCC	2 cut(s)	184, 212
BmiI	GGNNCC	3 cut(s)	186, 213, 214
BmsI	GCATC	1 cut(s)	78
BpiI	GAAGAC	1 cut(s)	232
BplI	GAGNNNNNCTC	2 cut(s)	56, 88
Bpu10I	CCTNAGC	1 cut(s)	207
BsaJI	CCNNGG	1 cut(s)	163
BsaWI	WCCGGW	1 cut(s)	155
Bsc4I	CCNNNNNNNGG	1 cut(s)	221
Bse118I	RCCGGY	1 cut(s)	155
Bse3DI	GCAATG	1 cut(s)	143
BseDI	CCNNGG	1 cut(s)	163
BseGI	GGATG	2 cut(s)	93, 317
BseLI	CCNNNNNNNGG	1 cut(s)	221
BseMI	GCAATG	1 cut(s)	143
BseMII	CTCAG	1 cut(s)	221
BseRI	GAGGAG	1 cut(s)	44
BseXI	GCAGC	1 cut(s)	120
Bsh1285I	CGRYCG	1 cut(s)	160
BshTI	ACCGGT	1 cut(s)	155
BsiEI	CGRYCG	1 cut(s)	160
BsiHKAI	GWGCWC	2 cut(s)	74, 208
BsiSI	CCGG	1 cut(s)	156
BslFI	GGGAC	1 cut(s)	225
BslI	CCNNNNNNNGG	1 cut(s)	221
BsmAI	GTCTC	1 cut(s)	290
BsmFI	GGGAC	1 cut(s)	225
Bsp1286I	GDGCHC	2 cut(s)	74, 208
Bsp143I	GATC	1 cut(s)	306
BspACI	CCGC	1 cut(s)	355
BspCNI	CTCAG	1 cut(s)	220
BspLI	GGNNCC	3 cut(s)	186, 213, 214
BspMI	ACCTGC	1 cut(s)	68
BspTI	CTTAAG	1 cut(s)	191
BsrDI	GCAATG	1 cut(s)	143
BsrFI	RCCGGY	1 cut(s)	155
BssAI	RCCGGY	1 cut(s)	155
BssECI	CCNNGG	1 cut(s)	163
BssMI	GATC	1 cut(s)	306
BstAFI	CTTAAG	1 cut(s)	191
BstAPI	GCANNNNNTGC	1 cut(s)	133
BstC8I	GCNNGC	2 cut(s)	125, 360
BstDEI	CTNAG	2 cut(s)	200, 207
BstDSI	CCRYGG	1 cut(s)	163
BstF5I	GGATG	2 cut(s)	93, 317
BstKTI	GATC	1 cut(s)	309
BstMAI	GTCTC	1 cut(s)	290
BstMBI	GATC	1 cut(s)	306
BstMCI	CGRYCG	1 cut(s)	160
BstMWI	GCNNNNNNNGC	2 cut(s)	69, 133
BstV1I	GCAGC	1 cut(s)	120
BstV2I	GAAGAC	1 cut(s)	232
BtgI	CCRYGG	1 cut(s)	163
BtsCI	GGATG	2 cut(s)	93, 317
BtsI	GCAGTG	1 cut(s)	253
BtsIMutI	CAGTG	1 cut(s)	253
BveI	ACCTGC	1 cut(s)	68
Cac8I	GCNNGC	2 cut(s)	125, 360
Cfr10I	RCCGGY	1 cut(s)	155
Cfr13I	GGNCC	2 cut(s)	184, 212
CseI	GACGC	1 cut(s)	331
CspAI	ACCGGT	1 cut(s)	155
CviAII	CATG	1 cut(s)	324
CviJI	RGCY	4 cut(s)	45, 106, 123, 133
CviKI_1	RGCY	4 cut(s)	45, 106, 123, 133
DdeI	CTNAG	2 cut(s)	200, 207
DpnI	GATC	1 cut(s)	308
DpnII	GATC	1 cut(s)	306
DraIII	CACNNNGTG	1 cut(s)	203
Eco47I	GGWCC	2 cut(s)	184, 212
EcoO109I	RGGNCCY	2 cut(s)	184, 212
FaeI	CATG	1 cut(s)	327
FaiI	YATR	5 cut(s)	258, 311, 325, 377, 388
FalI	AAGNNNNNCTT	2 cut(s)	107, 139
FaqI	GGGAC	1 cut(s)	225
FatI	CATG	1 cut(s)	323
FbaI	TGATCA	1 cut(s)	306
Fnu4HI	GCNGC	2 cut(s)	134, 356
FokI	GGATG	2 cut(s)	100, 304
Fsp4HI	GCNGC	2 cut(s)	134, 356
FspBI	CTAG	1 cut(s)	111
GluI	GCNGC	2 cut(s)	134, 356
HapII	CCGG	1 cut(s)	156
HgaI	GACGC	1 cut(s)	331
Hin1II	CATG	1 cut(s)	327
HindIII	AAGCTT	1 cut(s)	121
HinfI	GANTC	1 cut(s)	168
HpaII	CCGG	1 cut(s)	156
HphI	GGTGA	2 cut(s)	49, 290
Hpy166II	GTNNAC	1 cut(s)	329
Hpy188III	TCNNGA	1 cut(s)	172
Hpy8I	GTNNAC	1 cut(s)	329
HpyCH4V	TGCA	3 cut(s)	91, 127, 136
HpyF10VI	GCNNNNNNNGC	2 cut(s)	69, 133
HpyF3I	CTNAG	2 cut(s)	200, 207
Hsp92II	CATG	1 cut(s)	327
KflI	GGGWCCC	1 cut(s)	212
Ksp22I	TGATCA	1 cut(s)	306
Kzo9I	GATC	1 cut(s)	306
LpnPI	CCDG	3 cut(s)	73, 169, 194
Lsp1109I	GCAGC	1 cut(s)	120
LweI	GCATC	1 cut(s)	78
MaeI	CTAG	1 cut(s)	111
MaeIII	GTNAC	4 cut(s)	23, 142, 195, 248
MalI	GATC	1 cut(s)	308
MboI	GATC	1 cut(s)	306
MboII	GAAGA	2 cut(s)	237, 379
MhlI	GDGCHC	2 cut(s)	74, 208
MluCI	AATT	1 cut(s)	5
MmeI	TCCRAC	1 cut(s)	65
MnlI	CCTC	2 cut(s)	65, 331
MseI	TTAA	2 cut(s)	119, 192
MslI	CAYNNNNRTG	1 cut(s)	322
MspCI	CTTAAG	1 cut(s)	191
MspI	CCGG	1 cut(s)	156
MwoI	GCNNNNNNNGC	2 cut(s)	69, 133
NdeII	GATC	1 cut(s)	306
NlaIII	CATG	1 cut(s)	327
NlaIV	GGNNCC	3 cut(s)	186, 213, 214
NmuCI	GTSAC	3 cut(s)	23, 195, 248
PaqCI	CACCTGC	1 cut(s)	68
PfeI	GAWTC	1 cut(s)	168
PinAI	ACCGGT	1 cut(s)	155
PkrI	GCNGC	2 cut(s)	135, 357
PpuMI	RGGWCCY	2 cut(s)	184, 212
Psp5II	RGGWCCY	2 cut(s)	184, 212
PspN4I	GGNNCC	3 cut(s)	186, 213, 214
PspPI	GGNCC	2 cut(s)	184, 212
PspPPI	RGGWCCY	2 cut(s)	184, 212
RseI	CAYNNNNRTG	1 cut(s)	322
SaqAI	TTAA	2 cut(s)	119, 192
SatI	GCNGC	2 cut(s)	134, 356
Sau3AI	GATC	1 cut(s)	306
Sau96I	GGNCC	2 cut(s)	184, 212
SduI	GDGCHC	2 cut(s)	74, 208
SetI	ASST	5 cut(s)	33, 62, 125, 135, 280
SfaNI	GCATC	1 cut(s)	78
SinI	GGWCC	2 cut(s)	184, 212
SmiMI	CAYNNNNRTG	1 cut(s)	322
SmlI	CTYRAG	1 cut(s)	191
SmoI	CTYRAG	1 cut(s)	191
Sse9I	AATT	1 cut(s)	5
SsiI	CCGC	1 cut(s)	355
SspMI	CTAG	1 cut(s)	111
TaqI	TCGA	2 cut(s)	34, 74
TasI	AATT	1 cut(s)	5
TauI	GCSGC	1 cut(s)	358
TfiI	GAWTC	1 cut(s)	168
Tru1I	TTAA	2 cut(s)	119, 192
Tru9I	TTAA	2 cut(s)	119, 192
TscAI	CASTG	1 cut(s)	253
TseFI	GTSAC	3 cut(s)	23, 195, 248
TseI	GCWGC	1 cut(s)	133
Tsp45I	GTSAC	3 cut(s)	23, 195, 248
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	2 cut(s)	71, 346
TspRI	CASTG	1 cut(s)	253
Vha464I	CTTAAG	1 cut(s)	191
VpaK11BI	GGWCC	2 cut(s)	184, 212
XapI	RAATTY	1 cut(s)	5
XspI	CTAG	1 cut(s)	111

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.