Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0000528

Physical Location & Seq

Genomic Coordinates Reverse (-)

65661627 .. 65662601

Gene Structure 975 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00129660.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 330 bp

ATGACGTGGCCGGAGTTGTGTTTTCCGGCGGGTCCGAAAACACAAGGCTGCACCGCCGTGGAAGAGAATCGGCGCAGAGGCACCACGGGGACGACCGAGAGGAGGAGGCGACCCCGCCGACCTAGTTTCACGGCGGAGACCGCCGCAATTGCGGAAAAGTCGGGTCGGATCGACCGGGTCCGGGTCGGTAAGGGGACTAAGAGGGATTTTAGCTCTGCGATTCTCGAGCAGAAGAAGGCAGCAAATCGCCTTGTAGTTGATGAGGCCATTAACGATGACAACTCCGTCGTTGCAATCCACTCGAGCCCGGGGGAAGCTCCGGCTCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005737 GO:0005794 GO:0005829 GO:0005886 GO:0008150 GO:0009893 GO:0009894 GO:0009896 GO:0010035 GO:0010038 GO:0010604 GO:0012505 GO:0016020 GO:0019222 GO:0031974 GO:0031981 GO:0042176 GO:0042221 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045732 GO:0046686 GO:0048518 GO:0050789 GO:0050896 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0065007 GO:0070013 GO:0071944 GO:0080090

KEGG Pathways

Metabolic & Signaling

ko04141 ko05134 map04141 map05134

Pfam Domains

Protein Families

AAA CDC48_2 CDC48_N Vps4_C

Protein Analysis

109

Amino Acids

11.92

Weight (kDa)

10.01

Isoelectric Point (pI)

65.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000528)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49650
fragaria_vesca	FvH4_1g18770 FvH4_1g18770 FvH4_7g34230
malus_domestica	MD01G1046900.v1.1 MD15G1305400.v1.1 MD16G1282300.v1.1
prunus_persica	Prupe.6G211700_v2.0.a1 Prupe.6G211700_v2.0.a1
pyrus_communis	pycom01g07280 pycom15g26860 pycom16g25190 pycom16g25200
rosa_chinensis	RchiOBHm_Chr1g0351151 RchiOBHm_Chr2g0109641 RchiOBHm_Chr4g0386971 RchiOBHm_Chr4g0413031 RchiOBHm_Chr4g0429541
rosa_laevigata	RLG00000007037 RLG00000009264 RLG00000009427 RLG00000015442 RLG00000017752 RLG00000017990 RLG00000022570 RLG00000028427
rosa_multiflora	Rmu_sc0000031.1_g000013 Rmu_sc0000332.1_g000058 Rmu_sc0000346.1_g000014 Rmu_sc0000698.1_g000147 Rmu_sc0001152.1_g000047 Rmu_sc0001494.1_g000003 Rmu_sc0002254.1_g000001 Rmu_sc0002531.1_g000001 Rmu_sc0002717.1_g000016 Rmu_sc0002717.1_g000017 Rmu_sc0003220.1_g000024 Rmu_sc0005016.1_g000007 Rmu_sc0005608.1_g000020 Rmu_sc0010686.1_g000003 Rmu_sc0011012.1_g000011 Rmu_sc0021503.1_g000001
rosa_roxburghii	Rroxscaffold_2G00082300 Rroxscaffold_2G00099190 Rroxscaffold_2G00129660 Rroxscaffold_2G00134070 Rroxscaffold_3G00236170 Rroxscaffold_5G00346460 Rroxscaffold_7G00156600 Rroxscaffold_7G00205430
rosa_rugosa	Rorug01G0267800 Rorug02G0020700 Rorug02G0020700 Rorug02G0161500 Rorug02G0384900 Rorug05G0567000
rosa_samantha	Rh1AG062400 Rh1AG132200 Rh1AG231500 Rh1CG126100 Rh1CG184600 Rh1CG215600 Rh1CG237400 Rh2AG213700 Rh2BG068400 Rh2BG224100 Rh2BG239600 Rh2CG069600 Rh2CG216000 Rh2CG585300 Rh2DG067600 Rh2DG219200 Rh4AG177200 Rh5AG509600 Rh5BG290500 Rh5BG328900 Rh5DG300300 Rh5DG340100 Rh6BG103200 Rh7DG421500
rosa_wichuraiana	Rw1G006030 Rw1G006580 Rw2G006320 Rw5G004390 Rw5G029130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	284
AccB1I	GGYRCC	1 cut(s)	80
AciI	CCGC	7 cut(s)	29, 54, 115, 134, 141, 144, 152
AclWI	GGATC	1 cut(s)	176
AcoI	YGGCCR	1 cut(s)	8
AfiI	CCNNNNNNNGG	2 cut(s)	102, 181
AjiI	CACGTC	1 cut(s)	6
AleI	CACNNNNGTG	1 cut(s)	56
AluBI	AGCT	2 cut(s)	213, 317
AluI	AGCT	2 cut(s)	213, 317
Alw26I	GTCTC	1 cut(s)	131
AlwI	GGATC	1 cut(s)	176
Ama87I	CYCGRG	3 cut(s)	224, 301, 307
AoxI	GGCC	2 cut(s)	8, 264
ApeKI	GCWGC	2 cut(s)	48, 239
AspLEI	GCGC	1 cut(s)	75
AspS9I	GGNCC	2 cut(s)	32, 178
AsuC2I	CCSGG	4 cut(s)	176, 182, 308, 309
AvaI	CYCGRG	3 cut(s)	224, 301, 307
AvaII	GGWCC	2 cut(s)	32, 178
BanI	GGYRCC	1 cut(s)	80
BanII	GRGCYC	1 cut(s)	308
BbvI	GCAGC	2 cut(s)	35, 251
BceAI	ACGGC	2 cut(s)	41, 147
BcgI	CGANNNNNNTGC	2 cut(s)	282, 316
BcnI	CCSGG	4 cut(s)	176, 182, 308, 309
BcoDI	GTCTC	1 cut(s)	131
BfaI	CTAG	1 cut(s)	123
BisI	GCNGC	3 cut(s)	49, 144, 240
BlsI	GCNGC	3 cut(s)	50, 145, 241
Bme1390I	CCNGG	4 cut(s)	176, 182, 308, 309
Bme18I	GGWCC	2 cut(s)	32, 178
BmeT110I	CYCGRG	3 cut(s)	224, 301, 307
BmgBI	CACGTC	1 cut(s)	6
BmgT120I	GGNCC	2 cut(s)	32, 178
BmiI	GGNNCC	3 cut(s)	33, 82, 179
BmrFI	CCNGG	4 cut(s)	176, 182, 308, 309
BpuMI	CCSGG	4 cut(s)	176, 182, 308, 309
BsaI	GGTCTC	1 cut(s)	131
BsaJI	CCNNGG	4 cut(s)	57, 84, 307, 308
Bsc4I	CCNNNNNNNGG	2 cut(s)	102, 181
BseDI	CCNNGG	4 cut(s)	57, 84, 307, 308
BseLI	CCNNNNNNNGG	2 cut(s)	102, 181
BseRI	GAGGAG	2 cut(s)	115, 118
BseXI	GCAGC	2 cut(s)	35, 251
BsgI	GTGCAG	1 cut(s)	34
Bsh1285I	CGRYCG	2 cut(s)	96, 175
BshFI	GGCC	2 cut(s)	10, 266
BshNI	GGYRCC	1 cut(s)	80
BsiEI	CGRYCG	2 cut(s)	96, 175
BsiHKCI	CYCGRG	3 cut(s)	224, 301, 307
BsiSI	CCGG	6 cut(s)	11, 26, 175, 181, 308, 320
BslFI	GGGAC	2 cut(s)	103, 208
BslI	CCNNNNNNNGG	2 cut(s)	102, 181
BsmAI	GTCTC	1 cut(s)	131
BsmFI	GGGAC	2 cut(s)	103, 208
BsnI	GGCC	2 cut(s)	10, 266
Bso31I	GGTCTC	1 cut(s)	131
BsoBI	CYCGRG	3 cut(s)	224, 301, 307
Bsp1286I	GDGCHC	1 cut(s)	308
Bsp143I	GATC	1 cut(s)	168
BspACI	CCGC	7 cut(s)	29, 54, 115, 134, 141, 144, 152
BspANI	GGCC	2 cut(s)	10, 266
BspLI	GGNNCC	3 cut(s)	33, 82, 179
BspPI	GGATC	1 cut(s)	176
BspT107I	GGYRCC	1 cut(s)	80
BspTNI	GGTCTC	1 cut(s)	131
BssECI	CCNNGG	4 cut(s)	57, 84, 307, 308
BssMI	GATC	1 cut(s)	168
Bst6I	CTCTTC	1 cut(s)	57
BstDEI	CTNAG	1 cut(s)	198
BstDSI	CCRYGG	2 cut(s)	57, 84
BstHHI	GCGC	1 cut(s)	75
BstKTI	GATC	1 cut(s)	171
BstMAI	GTCTC	1 cut(s)	131
BstMBI	GATC	1 cut(s)	168
BstMCI	CGRYCG	2 cut(s)	96, 175
BstMWI	GCNNNNNNNGC	2 cut(s)	140, 149
BstSCI	CCNGG	4 cut(s)	174, 180, 306, 307
BstV1I	GCAGC	2 cut(s)	35, 251
BsuRI	GGCC	2 cut(s)	10, 266
BtgI	CCRYGG	2 cut(s)	57, 84
BtrI	CACGTC	1 cut(s)	6
CfoI	GCGC	1 cut(s)	75
Cfr13I	GGNCC	2 cut(s)	32, 178
Cfr9I	CCCGGG	1 cut(s)	307
CviJI	RGCY	7 cut(s)	10, 48, 213, 266, 306, 317, 323
CviKI_1	RGCY	7 cut(s)	10, 48, 213, 266, 306, 317, 323
DdeI	CTNAG	1 cut(s)	198
DpnI	GATC	1 cut(s)	170
DpnII	GATC	1 cut(s)	168
DrdI	GACNNNNNNGTC	1 cut(s)	284
DseDI	GACNNNNNNGTC	1 cut(s)	284
EaeI	YGGCCR	1 cut(s)	8
Eam1104I	CTCTTC	1 cut(s)	57
EarI	CTCTTC	1 cut(s)	57
EciI	GGCGGA	1 cut(s)	149
Eco24I	GRGCYC	1 cut(s)	308
Eco31I	GGTCTC	1 cut(s)	131
Eco47I	GGWCC	2 cut(s)	32, 178
Eco88I	CYCGRG	3 cut(s)	224, 301, 307
EcoT38I	GRGCYC	1 cut(s)	308
FaqI	GGGAC	2 cut(s)	103, 208
FauI	CCCGC	2 cut(s)	22, 122
Fnu4HI	GCNGC	3 cut(s)	49, 144, 240
FriOI	GRGCYC	1 cut(s)	308
Fsp4HI	GCNGC	3 cut(s)	49, 144, 240
FspBI	CTAG	1 cut(s)	123
GlaI	GCGC	1 cut(s)	74
GluI	GCNGC	3 cut(s)	49, 144, 240
HaeIII	GGCC	2 cut(s)	10, 266
HapII	CCGG	6 cut(s)	11, 26, 175, 181, 308, 320
HhaI	GCGC	1 cut(s)	75
Hin6I	GCGC	1 cut(s)	73
HinP1I	GCGC	1 cut(s)	73
HinfI	GANTC	2 cut(s)	67, 220
HpaII	CCGG	6 cut(s)	11, 26, 175, 181, 308, 320
Hpy188I	TCNGA	2 cut(s)	36, 168
Hpy188III	TCNNGA	1 cut(s)	224
Hpy99I	CGWCG	1 cut(s)	290
HpyAV	CCTTC	1 cut(s)	229
HpyCH4IV	ACGT	1 cut(s)	5
HpyCH4V	TGCA	2 cut(s)	51, 293
HpyF10VI	GCNNNNNNNGC	2 cut(s)	140, 149
HpyF3I	CTNAG	1 cut(s)	198
HpySE526I	ACGT	1 cut(s)	5
HspAI	GCGC	1 cut(s)	73
Kzo9I	GATC	1 cut(s)	168
LmnI	GCTCC	1 cut(s)	322
LpnPI	CCDG	5 cut(s)	24, 39, 188, 194, 321
Lsp1109I	GCAGC	2 cut(s)	35, 251
MaeI	CTAG	1 cut(s)	123
MaeII	ACGT	1 cut(s)	5
MalI	GATC	1 cut(s)	170
MboI	GATC	1 cut(s)	168
MboII	GAAGA	2 cut(s)	74, 244
MfeI	CAATTG	1 cut(s)	147
MhlI	GDGCHC	1 cut(s)	308
MluCI	AATT	1 cut(s)	147
MmeI	TCCRAC	1 cut(s)	146
MnlI	CCTC	6 cut(s)	71, 93, 96, 99, 195, 256
MseI	TTAA	1 cut(s)	270
MslI	CAYNNNNRTG	1 cut(s)	56
MspI	CCGG	6 cut(s)	11, 26, 175, 181, 308, 320
MspR9I	CCNGG	4 cut(s)	176, 182, 308, 309
MunI	CAATTG	1 cut(s)	147
MwoI	GCNNNNNNNGC	2 cut(s)	140, 149
NciI	CCSGG	4 cut(s)	176, 182, 308, 309
NdeII	GATC	1 cut(s)	168
NlaIV	GGNNCC	3 cut(s)	33, 82, 179
OliI	CACNNNNGTG	1 cut(s)	56
PaeR7I	CTCGAG	2 cut(s)	224, 301
PfeI	GAWTC	2 cut(s)	67, 220
PflFI	GACNNNGTC	1 cut(s)	176
PkrI	GCNGC	3 cut(s)	50, 145, 241
PspN4I	GGNNCC	3 cut(s)	33, 82, 179
PspPI	GGNCC	2 cut(s)	32, 178
PspXI	VCTCGAGB	1 cut(s)	301
PsyI	GACNNNGTC	1 cut(s)	176
RseI	CAYNNNNRTG	1 cut(s)	56
SaqAI	TTAA	1 cut(s)	270
SatI	GCNGC	3 cut(s)	49, 144, 240
Sau3AI	GATC	1 cut(s)	168
Sau96I	GGNCC	2 cut(s)	32, 178
ScrFI	CCNGG	4 cut(s)	176, 182, 308, 309
SduI	GDGCHC	1 cut(s)	308
SetI	ASST	4 cut(s)	8, 124, 215, 319
Sfr274I	CTCGAG	2 cut(s)	224, 301
SinI	GGWCC	2 cut(s)	32, 178
SlaI	CTCGAG	2 cut(s)	224, 301
SmaI	CCCGGG	1 cut(s)	309
SmiMI	CAYNNNNRTG	1 cut(s)	56
SmlI	CTYRAG	2 cut(s)	224, 301
SmoI	CTYRAG	2 cut(s)	224, 301
Sse9I	AATT	1 cut(s)	147
SsiI	CCGC	7 cut(s)	29, 54, 115, 134, 141, 144, 152
SspMI	CTAG	1 cut(s)	123
StyD4I	CCNGG	4 cut(s)	174, 180, 306, 307
TaiI	ACGT	1 cut(s)	8
TaqI	TCGA	3 cut(s)	171, 225, 302
TaqII	GACCGA	1 cut(s)	110
TasI	AATT	1 cut(s)	147
TauI	GCSGC	1 cut(s)	146
TfiI	GAWTC	2 cut(s)	67, 220
Tru1I	TTAA	1 cut(s)	270
Tru9I	TTAA	1 cut(s)	270
TseI	GCWGC	2 cut(s)	48, 239
TspGWI	ACGGA	1 cut(s)	274
TspMI	CCCGGG	1 cut(s)	307
Tth111I	GACNNNGTC	1 cut(s)	176
VpaK11BI	GGWCC	2 cut(s)	32, 178
XhoI	CTCGAG	2 cut(s)	224, 301
XmaI	CCCGGG	1 cut(s)	307
XspI	CTAG	1 cut(s)	123

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.