Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0000528

Physical Location & Seq

Genomic Coordinates Reverse (-)

37682839 .. 37692968

Gene Structure 10130 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG300300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

ATGATCATATCATCATCCTCATGTGGACGGACTACTTGCGTCAAATGGTGGCGGCAAGCAGAGAAGATTGGATGTCTACACAAAATGCATATCGTCCGTGATCTCTGGGGTTGTTCATGGTCTCAATGCAACTGTGTTTGCGTATGGTTCTACCGGAAGGTTCAGTCAGCTGATAAGATCCTTGAACTCTTAAACGTGGGGAACAGCAGACGGAAAACTGAAAGCACGGAGGCTAATGCAACATCTTCTCGGAATCTCCGACCTCGAGGCAAAACAAAGTGGGAGTATGTTCAGAGGTCAGAAATTTATTTTCTAGATCAACGACTCGGCGAAACAATTCTTCCCCAGAAAGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000070 GO:0000226 GO:0000278 GO:0000280 GO:0000819 GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005871 GO:0005875 GO:0005929 GO:0006928 GO:0006996 GO:0007010 GO:0007017 GO:0007018 GO:0007019 GO:0007049 GO:0007059 GO:0008150 GO:0008574 GO:0009987 GO:0010938 GO:0015630 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022402 GO:0022411 GO:0030030 GO:0031109 GO:0031122 GO:0032984 GO:0032991 GO:0042623 GO:0042995 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043624 GO:0043933 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0044782 GO:0048285 GO:0051261 GO:0051276 GO:0060404 GO:0061523 GO:0070462 GO:0071840 GO:0097435 GO:0098813 GO:0120025 GO:0120036 GO:0140014 GO:1903008 GO:1903047 GO:1990939

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kinesin

Protein Analysis

118

Amino Acids

13.84

Weight (kDa)

9.47

Isoelectric Point (pI)

62.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Image

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Publication-ready

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Orthologous Genes (Group: OG0000528)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49650
fragaria_vesca	FvH4_1g18770 FvH4_1g18770 FvH4_7g34230
malus_domestica	MD01G1046900.v1.1 MD15G1305400.v1.1 MD16G1282300.v1.1
prunus_persica	Prupe.6G211700_v2.0.a1 Prupe.6G211700_v2.0.a1
pyrus_communis	pycom01g07280 pycom15g26860 pycom16g25190 pycom16g25200
rosa_chinensis	RchiOBHm_Chr1g0351151 RchiOBHm_Chr2g0109641 RchiOBHm_Chr4g0386971 RchiOBHm_Chr4g0413031 RchiOBHm_Chr4g0429541
rosa_laevigata	RLG00000007037 RLG00000009264 RLG00000009427 RLG00000015442 RLG00000017752 RLG00000017990 RLG00000022570 RLG00000028427
rosa_multiflora	Rmu_sc0000031.1_g000013 Rmu_sc0000332.1_g000058 Rmu_sc0000346.1_g000014 Rmu_sc0000698.1_g000147 Rmu_sc0001152.1_g000047 Rmu_sc0001494.1_g000003 Rmu_sc0002254.1_g000001 Rmu_sc0002531.1_g000001 Rmu_sc0002717.1_g000016 Rmu_sc0002717.1_g000017 Rmu_sc0003220.1_g000024 Rmu_sc0005016.1_g000007 Rmu_sc0005608.1_g000020 Rmu_sc0010686.1_g000003 Rmu_sc0011012.1_g000011 Rmu_sc0021503.1_g000001
rosa_roxburghii	Rroxscaffold_2G00082300 Rroxscaffold_2G00099190 Rroxscaffold_2G00129660 Rroxscaffold_2G00134070 Rroxscaffold_3G00236170 Rroxscaffold_5G00346460 Rroxscaffold_7G00156600 Rroxscaffold_7G00205430
rosa_rugosa	Rorug01G0267800 Rorug02G0020700 Rorug02G0020700 Rorug02G0161500 Rorug02G0384900 Rorug05G0567000
rosa_samantha	Rh1AG062400 Rh1AG132200 Rh1AG231500 Rh1CG126100 Rh1CG184600 Rh1CG215600 Rh1CG237400 Rh2AG213700 Rh2BG068400 Rh2BG224100 Rh2BG239600 Rh2CG069600 Rh2CG216000 Rh2CG585300 Rh2DG067600 Rh2DG219200 Rh4AG177200 Rh5AG509600 Rh5BG290500 Rh5BG328900 Rh5DG300300 Rh5DG340100 Rh6BG103200 Rh7DG421500
rosa_wichuraiana	Rw1G006030 Rw1G006580 Rw2G006320 Rw5G004390 Rw5G029130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	264
AccI	GTMKAC	1 cut(s)	76
AciI	CCGC	1 cut(s)	52
AclWI	GGATC	1 cut(s)	172
AcsI	RAATTY	1 cut(s)	303
AgsI	TTSAA	1 cut(s)	185
AluBI	AGCT	1 cut(s)	170
AluI	AGCT	1 cut(s)	170
Alw26I	GTCTC	1 cut(s)	126
AlwI	GGATC	1 cut(s)	172
Ama87I	CYCGRG	1 cut(s)	264
ApoI	RAATTY	1 cut(s)	303
Asp700I	GAANNNNTTC	1 cut(s)	336
AvaI	CYCGRG	1 cut(s)	264
BclI	TGATCA	1 cut(s)	3
BcoDI	GTCTC	1 cut(s)	126
BfaI	CTAG	1 cut(s)	314
BisI	GCNGC	1 cut(s)	53
BlsI	GCNGC	1 cut(s)	54
BmeT110I	CYCGRG	1 cut(s)	264
BsaI	GGTCTC	1 cut(s)	126
BsaWI	WCCGGW	1 cut(s)	153
BseGI	GGATG	2 cut(s)	14, 77
BsiHKCI	CYCGRG	1 cut(s)	264
BsiSI	CCGG	1 cut(s)	154
BsmAI	GTCTC	1 cut(s)	126
Bso31I	GGTCTC	1 cut(s)	126
BsoBI	CYCGRG	1 cut(s)	264
Bsp143I	GATC	4 cut(s)	3, 100, 177, 316
BspACI	CCGC	1 cut(s)	52
BspPI	GGATC	1 cut(s)	172
BspTNI	GGTCTC	1 cut(s)	126
BssMI	GATC	4 cut(s)	3, 100, 177, 316
Bst4CI	ACNGT	1 cut(s)	134
BstC8I	GCNNGC	1 cut(s)	57
BstF5I	GGATG	2 cut(s)	14, 77
BstKTI	GATC	4 cut(s)	6, 103, 180, 319
BstMAI	GTCTC	1 cut(s)	126
BstMBI	GATC	4 cut(s)	3, 100, 177, 316
BstX2I	RGATCY	1 cut(s)	177
BstYI	RGATCY	1 cut(s)	177
BtsCI	GGATG	2 cut(s)	14, 77
Cac8I	GCNNGC	1 cut(s)	57
CseI	GACGC	1 cut(s)	28
CviAII	CATG	2 cut(s)	21, 117
CviJI	RGCY	2 cut(s)	170, 233
CviKI_1	RGCY	2 cut(s)	170, 233
DpnI	GATC	4 cut(s)	5, 102, 179, 318
DpnII	GATC	4 cut(s)	3, 100, 177, 316
Eco31I	GGTCTC	1 cut(s)	126
Eco88I	CYCGRG	1 cut(s)	264
EcoT22I	ATGCAT	1 cut(s)	90
FaeI	CATG	2 cut(s)	24, 120
FaiI	YATR	6 cut(s)	8, 22, 90, 118, 145, 288
FatI	CATG	2 cut(s)	20, 116
FbaI	TGATCA	1 cut(s)	3
FblI	GTMKAC	1 cut(s)	76
Fnu4HI	GCNGC	1 cut(s)	53
FokI	GGATG	1 cut(s)	84
Fsp4HI	GCNGC	1 cut(s)	53
FspBI	CTAG	1 cut(s)	314
GluI	GCNGC	1 cut(s)	53
HapII	CCGG	1 cut(s)	154
HgaI	GACGC	1 cut(s)	28
Hin1II	CATG	2 cut(s)	24, 120
HinfI	GANTC	2 cut(s)	253, 324
HpaII	CCGG	1 cut(s)	154
Hpy166II	GTNNAC	2 cut(s)	26, 77
Hpy188I	TCNGA	4 cut(s)	252, 260, 294, 301
Hpy188III	TCNNGA	1 cut(s)	314
Hpy8I	GTNNAC	2 cut(s)	26, 77
HpyAV	CCTTC	1 cut(s)	151
HpyCH4III	ACNGT	1 cut(s)	134
HpyCH4IV	ACGT	1 cut(s)	195
HpyCH4V	TGCA	3 cut(s)	88, 129, 239
HpySE526I	ACGT	1 cut(s)	195
Hsp92II	CATG	2 cut(s)	24, 120
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	4 cut(s)	3, 100, 177, 316
LpnPI	CCDG	2 cut(s)	91, 167
MaeI	CTAG	1 cut(s)	314
MaeII	ACGT	1 cut(s)	195
MalI	GATC	4 cut(s)	5, 102, 179, 318
MboI	GATC	4 cut(s)	3, 100, 177, 316
MboII	GAAGA	3 cut(s)	76, 237, 332
MflI	RGATCY	1 cut(s)	177
MluCI	AATT	2 cut(s)	303, 336
MlyI	GAGTC	1 cut(s)	318
MmeI	TCCRAC	1 cut(s)	283
MnlI	CCTC	5 cut(s)	28, 223, 260, 273, 288
Mph1103I	ATGCAT	1 cut(s)	90
MroXI	GAANNNNTTC	1 cut(s)	336
MseI	TTAA	1 cut(s)	191
MslI	CAYNNNNRTG	1 cut(s)	19
MspA1I	CMGCKG	1 cut(s)	170
MspI	CCGG	1 cut(s)	154
NdeII	GATC	4 cut(s)	3, 100, 177, 316
NlaIII	CATG	2 cut(s)	24, 120
NmeAIII	GCCGAG	1 cut(s)	306
NsiI	ATGCAT	1 cut(s)	90
PaeR7I	CTCGAG	1 cut(s)	264
PcsI	WCGNNNNNNNCGW	1 cut(s)	256
PdmI	GAANNNNTTC	1 cut(s)	336
PfeI	GAWTC	1 cut(s)	253
PkrI	GCNGC	1 cut(s)	54
PleI	GAGTC	1 cut(s)	318
PpsI	GAGTC	1 cut(s)	318
PspXI	VCTCGAGB	1 cut(s)	264
PsuI	RGATCY	1 cut(s)	177
PvuII	CAGCTG	1 cut(s)	170
RseI	CAYNNNNRTG	1 cut(s)	19
SaqAI	TTAA	1 cut(s)	191
SatI	GCNGC	1 cut(s)	53
Sau3AI	GATC	4 cut(s)	3, 100, 177, 316
SchI	GAGTC	1 cut(s)	318
SetI	ASST	5 cut(s)	162, 172, 198, 265, 299
Sfr274I	CTCGAG	1 cut(s)	264
SlaI	CTCGAG	1 cut(s)	264
SmiMI	CAYNNNNRTG	1 cut(s)	19
SmlI	CTYRAG	1 cut(s)	264
SmoI	CTYRAG	1 cut(s)	264
Sse9I	AATT	2 cut(s)	303, 336
SsiI	CCGC	1 cut(s)	52
SspMI	CTAG	1 cut(s)	314
TaaI	ACNGT	1 cut(s)	134
TaiI	ACGT	1 cut(s)	198
TaqI	TCGA	1 cut(s)	265
TasI	AATT	2 cut(s)	303, 336
TauI	GCSGC	1 cut(s)	55
TfiI	GAWTC	1 cut(s)	253
Tru1I	TTAA	1 cut(s)	191
Tru9I	TTAA	1 cut(s)	191
TspDTI	ATGAA	1 cut(s)	105
TspGWI	ACGGA	4 cut(s)	43, 86, 226, 242
XapI	RAATTY	1 cut(s)	303
XbaI	TCTAGA	1 cut(s)	313
XhoI	CTCGAG	1 cut(s)	264
XmiI	GTMKAC	1 cut(s)	76
XmnI	GAANNNNTTC	1 cut(s)	336
XspI	CTAG	1 cut(s)	314
Zsp2I	ATGCAT	1 cut(s)	90

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.