Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0000528

Physical Location & Seq

Genomic Coordinates Reverse (-)

6095493 .. 6097536

Gene Structure 2044 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G006320.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGCAAGTCCTGAATTTTGATATGCCTCTAAGTGTTGAAGGATATGTTCATCGTATCGGTCGTACTGGAAGAGCATATAGTACTGGTGCTTCTGTGTCTCTTGTTTCTCCAGATGAGATGAAAGTTTTTGAAGAGATAAAGTCCTTTTTGGGTGATGATGAAGAAAATGATTCAAATAAACTTGTTCCATTTACTTTACTGACCAAGAATGCAGTGGAGTCTTTAAGATATAGAGCTGAGGATGTCTCAAAGAGTGTGACAAAACTTGCCGTAAGAGAATCCCGAGCTCAGGATTTGAGGAATGAAATTCTCAATTCTGAAAAGTTGAAGGCTCATTTTGAAGCCAACCAAAAGGATCTAGATCTGTTGAAACATGACAAGGTTTTGAGCAAGAAGCCCCCTGCTCCTCACCTGCGAGTTGTGCCTGATTATCTGTTGGATGCAACAACTAAGAAGCCAGCAAGAGTTAAGCTTGTGAGAGCTGCAATGGGTAACAACAACCCTGGTCGCCGTGGATTCAAGAAAAAATTCAAGAAAGATAAGGACCCCCTTAAGTCTCTCAGTGCTCAGGGACCCAAGAAAAGAAGAAGGGAAAGAAAAGATGGCAATGAGGACCATAAGCAAAAAAGGCAAAAGACATCCTTGTGTTGTATAGACGGGGTTTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010467 GO:0010501 GO:0016070 GO:0016072 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022613 GO:0031974 GO:0031981 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0071840 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

222

Amino Acids

25.23

Weight (kDa)

9.8

Isoelectric Point (pI)

36.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000528)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49650
fragaria_vesca	FvH4_1g18770 FvH4_1g18770 FvH4_7g34230
malus_domestica	MD01G1046900.v1.1 MD15G1305400.v1.1 MD16G1282300.v1.1
prunus_persica	Prupe.6G211700_v2.0.a1 Prupe.6G211700_v2.0.a1
pyrus_communis	pycom01g07280 pycom15g26860 pycom16g25190 pycom16g25200
rosa_chinensis	RchiOBHm_Chr1g0351151 RchiOBHm_Chr2g0109641 RchiOBHm_Chr4g0386971 RchiOBHm_Chr4g0413031 RchiOBHm_Chr4g0429541
rosa_laevigata	RLG00000007037 RLG00000009264 RLG00000009427 RLG00000015442 RLG00000017752 RLG00000017990 RLG00000022570 RLG00000028427
rosa_multiflora	Rmu_sc0000031.1_g000013 Rmu_sc0000332.1_g000058 Rmu_sc0000346.1_g000014 Rmu_sc0000698.1_g000147 Rmu_sc0001152.1_g000047 Rmu_sc0001494.1_g000003 Rmu_sc0002254.1_g000001 Rmu_sc0002531.1_g000001 Rmu_sc0002717.1_g000016 Rmu_sc0002717.1_g000017 Rmu_sc0003220.1_g000024 Rmu_sc0005016.1_g000007 Rmu_sc0005608.1_g000020 Rmu_sc0010686.1_g000003 Rmu_sc0011012.1_g000011 Rmu_sc0021503.1_g000001
rosa_roxburghii	Rroxscaffold_2G00082300 Rroxscaffold_2G00099190 Rroxscaffold_2G00129660 Rroxscaffold_2G00134070 Rroxscaffold_3G00236170 Rroxscaffold_5G00346460 Rroxscaffold_7G00156600 Rroxscaffold_7G00205430
rosa_rugosa	Rorug01G0267800 Rorug02G0020700 Rorug02G0020700 Rorug02G0161500 Rorug02G0384900 Rorug05G0567000
rosa_samantha	Rh1AG062400 Rh1AG132200 Rh1AG231500 Rh1CG126100 Rh1CG184600 Rh1CG215600 Rh1CG237400 Rh2AG213700 Rh2BG068400 Rh2BG224100 Rh2BG239600 Rh2CG069600 Rh2CG216000 Rh2CG585300 Rh2DG067600 Rh2DG219200 Rh4AG177200 Rh5AG509600 Rh5BG290500 Rh5BG328900 Rh5DG300300 Rh5DG340100 Rh6BG103200 Rh7DG421500
rosa_wichuraiana	Rw1G006030 Rw1G006580 Rw2G006320 Rw5G004390 Rw5G029130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	420
Acc36I	ACCTGC	1 cut(s)	420
AclWI	GGATC	1 cut(s)	363
AcsI	RAATTY	3 cut(s)	13, 306, 527
AfaI	GTAC	2 cut(s)	64, 82
AfiI	CCNNNNNNNGG	1 cut(s)	289
AflII	CTTAAG	1 cut(s)	551
AgsI	TTSAA	8 cut(s)	38, 131, 174, 328, 341, 370, 520, 532
AjnI	CCWGG	1 cut(s)	502
AluBI	AGCT	4 cut(s)	236, 287, 472, 482
AluI	AGCT	4 cut(s)	236, 287, 472, 482
Alw21I	GWGCWC	2 cut(s)	289, 568
Alw26I	GTCTC	3 cut(s)	102, 250, 561
AlwI	GGATC	1 cut(s)	363
Ama87I	CYCGRG	1 cut(s)	282
ApeKI	GCWGC	1 cut(s)	482
ApoI	RAATTY	3 cut(s)	13, 306, 527
Asp700I	GAANNNNTTC	1 cut(s)	527
AspS9I	GGNCC	3 cut(s)	544, 572, 613
AsuHPI	GGTGA	2 cut(s)	164, 401
AvaI	CYCGRG	1 cut(s)	282
AvaII	GGWCC	3 cut(s)	544, 572, 613
BanII	GRGCYC	1 cut(s)	289
BarI	GAAGNNNNNNTAC	2 cut(s)	73, 105
Bbv12I	GWGCWC	2 cut(s)	289, 568
BbvCI	CCTCAGC	1 cut(s)	237
BbvI	GCAGC	1 cut(s)	469
BccI	CCATC	1 cut(s)	596
BceAI	ACGGC	2 cut(s)	254, 495
BciT130I	CCWGG	1 cut(s)	504
BcoDI	GTCTC	3 cut(s)	102, 250, 561
BfaI	CTAG	2 cut(s)	359, 667
BfrI	CTTAAG	1 cut(s)	551
BfuAI	ACCTGC	1 cut(s)	420
BglII	AGATCT	1 cut(s)	361
BisI	GCNGC	1 cut(s)	483
BlsI	GCNGC	1 cut(s)	484
BmcAI	AGTACT	1 cut(s)	82
Bme1390I	CCNGG	1 cut(s)	504
Bme18I	GGWCC	3 cut(s)	544, 572, 613
BmeT110I	CYCGRG	1 cut(s)	282
BmgT120I	GGNCC	3 cut(s)	544, 572, 613
BmiI	GGNNCC	3 cut(s)	546, 573, 574
BmrFI	CCNGG	1 cut(s)	504
BmsI	GCATC	1 cut(s)	430
BplI	GAGNNNNNCTC	2 cut(s)	230, 262
BpmI	CTGGAG	1 cut(s)	93
Bpu10I	CCTNAGC	3 cut(s)	237, 288, 567
BsaBI	GATNNNNATC	1 cut(s)	360
BsaJI	CCNNGG	2 cut(s)	502, 511
Bsc4I	CCNNNNNNNGG	1 cut(s)	289
Bse1I	ACTGG	2 cut(s)	70, 88
Bse3DI	GCAATG	2 cut(s)	492, 613
Bse8I	GATNNNNATC	1 cut(s)	360
BseBI	CCWGG	1 cut(s)	504
BseDI	CCNNGG	2 cut(s)	502, 511
BseGI	GGATG	3 cut(s)	247, 445, 638
BseJI	GATNNNNATC	1 cut(s)	360
BseLI	CCNNNNNNNGG	1 cut(s)	289
BseMI	GCAATG	2 cut(s)	492, 613
BseMII	CTCAG	4 cut(s)	228, 302, 574, 581
BseNI	ACTGG	2 cut(s)	70, 88
BseRI	GAGGAG	1 cut(s)	396
BseXI	GCAGC	1 cut(s)	469
Bsh1285I	CGRYCG	1 cut(s)	61
BsiEI	CGRYCG	1 cut(s)	61
BsiHKAI	GWGCWC	2 cut(s)	289, 568
BsiHKCI	CYCGRG	1 cut(s)	282
BslFI	GGGAC	1 cut(s)	585
BslI	CCNNNNNNNGG	1 cut(s)	289
BsmAI	GTCTC	3 cut(s)	102, 250, 561
BsmFI	GGGAC	1 cut(s)	585
BsmI	GAATGC	1 cut(s)	214
BsoBI	CYCGRG	1 cut(s)	282
Bsp1286I	GDGCHC	2 cut(s)	289, 568
Bsp143I	GATC	2 cut(s)	355, 361
BspCNI	CTCAG	4 cut(s)	229, 301, 573, 580
BspLI	GGNNCC	3 cut(s)	546, 573, 574
BspMI	ACCTGC	1 cut(s)	420
BspPI	GGATC	1 cut(s)	363
BspQI	GCTCTTC	1 cut(s)	64
BspTI	CTTAAG	1 cut(s)	551
BsrDI	GCAATG	2 cut(s)	492, 613
BsrI	ACTGG	2 cut(s)	70, 88
BssECI	CCNNGG	2 cut(s)	502, 511
BssMI	GATC	2 cut(s)	355, 361
Bst2UI	CCWGG	1 cut(s)	504
Bst6I	CTCTTC	2 cut(s)	64, 126
BstAFI	CTTAAG	1 cut(s)	551
BstC8I	GCNNGC	1 cut(s)	459
BstDEI	CTNAG	6 cut(s)	29, 237, 288, 450, 560, 567
BstDSI	CCRYGG	1 cut(s)	511
BstF5I	GGATG	3 cut(s)	247, 445, 638
BstKTI	GATC	2 cut(s)	358, 364
BstMAI	GTCTC	3 cut(s)	102, 250, 561
BstMBI	GATC	2 cut(s)	355, 361
BstMCI	CGRYCG	1 cut(s)	61
BstMWI	GCNNNNNNNGC	2 cut(s)	421, 628
BstNI	CCWGG	1 cut(s)	504
BstSCI	CCNGG	1 cut(s)	502
BstV1I	GCAGC	1 cut(s)	469
BstX2I	RGATCY	2 cut(s)	355, 361
BstYI	RGATCY	2 cut(s)	355, 361
BtgI	CCRYGG	1 cut(s)	511
BtsCI	GGATG	3 cut(s)	247, 445, 638
BtsI	GCAGTG	1 cut(s)	219
BtsIMutI	CAGTG	2 cut(s)	219, 568
BveI	ACCTGC	1 cut(s)	420
Cac8I	GCNNGC	1 cut(s)	459
Cfr13I	GGNCC	3 cut(s)	544, 572, 613
Csp6I	GTAC	2 cut(s)	63, 81
CviAII	CATG	1 cut(s)	374
CviJI	RGCY	8 cut(s)	236, 287, 332, 344, 397, 457, 472, 482
CviKI_1	RGCY	8 cut(s)	236, 287, 332, 344, 397, 457, 472, 482
CviQI	GTAC	2 cut(s)	63, 81
DdeI	CTNAG	6 cut(s)	29, 237, 288, 450, 560, 567
DpnI	GATC	2 cut(s)	357, 363
DpnII	GATC	2 cut(s)	355, 361
Eam1104I	CTCTTC	2 cut(s)	64, 126
EarI	CTCTTC	2 cut(s)	64, 126
Ecl136II	GAGCTC	1 cut(s)	287
Eco24I	GRGCYC	1 cut(s)	289
Eco47I	GGWCC	3 cut(s)	544, 572, 613
Eco53kI	GAGCTC	1 cut(s)	287
Eco88I	CYCGRG	1 cut(s)	282
EcoICRI	GAGCTC	1 cut(s)	287
EcoO109I	RGGNCCY	2 cut(s)	544, 572
EcoRII	CCWGG	1 cut(s)	502
EcoT38I	GRGCYC	1 cut(s)	289
FaeI	CATG	1 cut(s)	377
FaiI	YATR	8 cut(s)	23, 45, 76, 78, 231, 375, 618, 653
FalI	AAGNNNNNCTT	2 cut(s)	626, 658
FaqI	GGGAC	1 cut(s)	585
FatI	CATG	1 cut(s)	373
Fnu4HI	GCNGC	1 cut(s)	483
FokI	GGATG	3 cut(s)	254, 452, 625
FriOI	GRGCYC	1 cut(s)	289
Fsp4HI	GCNGC	1 cut(s)	483
FspBI	CTAG	2 cut(s)	359, 667
GluI	GCNGC	1 cut(s)	483
GsuI	CTGGAG	1 cut(s)	93
Hin1II	CATG	1 cut(s)	377
HindIII	AAGCTT	1 cut(s)	470
HinfI	GANTC	4 cut(s)	170, 218, 278, 516
HphI	GGTGA	2 cut(s)	164, 401
Hpy166II	GTNNAC	1 cut(s)	664
Hpy188I	TCNGA	1 cut(s)	319
Hpy188III	TCNNGA	7 cut(s)	10, 110, 282, 290, 359, 520, 532
Hpy8I	GTNNAC	1 cut(s)	664
HpyAV	CCTTC	3 cut(s)	32, 322, 582
HpyCH4V	TGCA	4 cut(s)	4, 212, 443, 485
HpyF10VI	GCNNNNNNNGC	2 cut(s)	421, 628
HpyF3I	CTNAG	6 cut(s)	29, 237, 288, 450, 560, 567
Hsp92II	CATG	1 cut(s)	377
KflI	GGGWCCC	1 cut(s)	572
Kzo9I	GATC	2 cut(s)	355, 361
LguI	GCTCTTC	1 cut(s)	64
LmnI	GCTCC	1 cut(s)	409
Lsp1109I	GCAGC	1 cut(s)	469
LweI	GCATC	1 cut(s)	430
MaeI	CTAG	2 cut(s)	359, 667
MaeIII	GTNAC	2 cut(s)	256, 491
MalI	GATC	2 cut(s)	357, 363
MboI	GATC	2 cut(s)	355, 361
MboII	GAAGA	4 cut(s)	81, 143, 173, 597
MflI	RGATCY	2 cut(s)	355, 361
MhlI	GDGCHC	2 cut(s)	289, 568
MluCI	AATT	4 cut(s)	13, 306, 313, 527
MlyI	GAGTC	1 cut(s)	227
MmeI	TCCRAC	1 cut(s)	417
MnlI	CCTC	5 cut(s)	36, 232, 291, 417, 604
MroXI	GAANNNNTTC	1 cut(s)	527
MseI	TTAA	3 cut(s)	224, 468, 552
MslI	CAYNNNNRTG	1 cut(s)	643
MspCI	CTTAAG	1 cut(s)	551
MspR9I	CCNGG	1 cut(s)	504
Mva1269I	GAATGC	1 cut(s)	214
MvaI	CCWGG	1 cut(s)	504
MwoI	GCNNNNNNNGC	2 cut(s)	421, 628
NdeII	GATC	2 cut(s)	355, 361
NlaIII	CATG	1 cut(s)	377
NlaIV	GGNNCC	3 cut(s)	546, 573, 574
NmuCI	GTSAC	1 cut(s)	256
PaqCI	CACCTGC	1 cut(s)	420
PciSI	GCTCTTC	1 cut(s)	64
PcsI	WCGNNNNNNNCGW	1 cut(s)	58
PctI	GAATGC	1 cut(s)	214
PdmI	GAANNNNTTC	1 cut(s)	527
PfeI	GAWTC	3 cut(s)	170, 278, 516
PkrI	GCNGC	1 cut(s)	484
PleI	GAGTC	1 cut(s)	226
PpsI	GAGTC	1 cut(s)	226
PpuMI	RGGWCCY	2 cut(s)	544, 572
Psp124BI	GAGCTC	1 cut(s)	289
Psp5II	RGGWCCY	2 cut(s)	544, 572
Psp6I	CCWGG	1 cut(s)	502
PspGI	CCWGG	1 cut(s)	502
PspN4I	GGNNCC	3 cut(s)	546, 573, 574
PspPI	GGNCC	3 cut(s)	544, 572, 613
PspPPI	RGGWCCY	2 cut(s)	544, 572
PsuI	RGATCY	2 cut(s)	355, 361
RsaI	GTAC	2 cut(s)	64, 82
RsaNI	GTAC	2 cut(s)	63, 81
RseI	CAYNNNNRTG	1 cut(s)	643
SacI	GAGCTC	1 cut(s)	289
SapI	GCTCTTC	1 cut(s)	64
SaqAI	TTAA	3 cut(s)	224, 468, 552
SatI	GCNGC	1 cut(s)	483
Sau3AI	GATC	2 cut(s)	355, 361
Sau96I	GGNCC	3 cut(s)	544, 572, 613
ScaI	AGTACT	1 cut(s)	82
SchI	GAGTC	1 cut(s)	227
ScrFI	CCNGG	1 cut(s)	504
SduI	GDGCHC	2 cut(s)	289, 568
SetI	ASST	6 cut(s)	238, 289, 384, 414, 474, 484
SfaNI	GCATC	1 cut(s)	430
SinI	GGWCC	3 cut(s)	544, 572, 613
SmiMI	CAYNNNNRTG	1 cut(s)	643
SmlI	CTYRAG	1 cut(s)	551
SmoI	CTYRAG	1 cut(s)	551
Sse9I	AATT	4 cut(s)	13, 306, 313, 527
SspMI	CTAG	2 cut(s)	359, 667
SstI	GAGCTC	1 cut(s)	289
StyD4I	CCNGG	1 cut(s)	502
TaqII	GACCGA	1 cut(s)	47
TasI	AATT	4 cut(s)	13, 306, 313, 527
TatI	WGTACW	1 cut(s)	80
TfiI	GAWTC	3 cut(s)	170, 278, 516
Tru1I	TTAA	3 cut(s)	224, 468, 552
Tru9I	TTAA	3 cut(s)	224, 468, 552
TscAI	CASTG	2 cut(s)	219, 568
TseFI	GTSAC	1 cut(s)	256
TseI	GCWGC	1 cut(s)	482
Tsp45I	GTSAC	1 cut(s)	256
TspDTI	ATGAA	4 cut(s)	38, 134, 174, 318
TspRI	CASTG	2 cut(s)	219, 568
Vha464I	CTTAAG	1 cut(s)	551
VpaK11BI	GGWCC	3 cut(s)	544, 572, 613
XapI	RAATTY	3 cut(s)	13, 306, 527
XbaI	TCTAGA	1 cut(s)	358
XcmI	CCANNNNNNNNNTGG	1 cut(s)	211
XmnI	GAANNNNTTC	1 cut(s)	527
XspI	CTAG	2 cut(s)	359, 667
ZrmI	AGTACT	1 cut(s)	82

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.