Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0000528

Physical Location & Seq

Genomic Coordinates Reverse (-)

43952519 .. 43955310

Gene Structure 2792 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG231500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

ATGAAATTCTCACCTCTAAAAAGTGACAAGGTTCTGAGCAAGAAGCCCCATACTCCTCACCTGCGAGTTGTGCCTGATTATCTGTCGGATGCAACAACTAAAGAAGCCAACGAGAAAGTTAAGCTTGCGAGAGCTGCAATGGGTAACAACAACCCTGGTCGCCGTGGATTCAAGAAAGATAAGGACCCCCTTAAGTCACTCAGTGCTCAGGGACCCAAGAAAGGAAGACGGGAAAGAAAAGATGGCAGTGAAAACCATAAGCAAAAAAGAAACAAAGGTGAGATACAAAACAATGAGACAGAAATGATCATATCATCATCCTCATGTGGACGGACTACTTGCGTCAAATGGTGGCGGCAAGCAGAGAAGATTGAGGTGCAATCATTAGAAGAGCTTCCAAAGCAGCTATTCCTGGAAATATATGAGCTTTCTCAAGCAAAGGATGTCTACACAAAATGCATATCGTCCGTGATCTCTGGGGTTGTTCATGGTCTCAATGCAACTGTGTTTGTGTATGGTTCTACCGGAAGTGGTAAAACATATACAATGGTGGGGACACAAAATGATCCCGGGCTCATGGTTCTCAGTTTGCATACAATATTTGATCTGATAAAAAAGGACAAGAGCTCTGATGAATTTGAAGTTACCTGCTCCTATCTTGAAGTCTATAACGAAGTTATCTATGATTTGCTTGAAAAGTCATCCGGCCATTTGGAGGATCCAGAGCAAGGAATCATTGTTGCTGGCCTCAGGTGTATAAAGGTTCAGTCAGCTGATAAGATCCTTGAACTCTTAAACGTGGGGAACAGCCGACGGAAAACTGAAAGCACGGAGGCTAATGCAACATCTTCTCGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000070 GO:0000226 GO:0000278 GO:0000280 GO:0000819 GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005871 GO:0005875 GO:0005929 GO:0006928 GO:0006996 GO:0007010 GO:0007017 GO:0007018 GO:0007019 GO:0007049 GO:0007059 GO:0008150 GO:0008574 GO:0009987 GO:0010938 GO:0015630 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022402 GO:0022411 GO:0030030 GO:0031109 GO:0031122 GO:0032984 GO:0032991 GO:0042623 GO:0042995 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043624 GO:0043933 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0044782 GO:0048285 GO:0051261 GO:0051276 GO:0060404 GO:0061523 GO:0070462 GO:0071840 GO:0097435 GO:0098813 GO:0120025 GO:0120036 GO:0140014 GO:1903008 GO:1903047 GO:1990939

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kinesin

Protein Analysis

285

Amino Acids

31.81

Weight (kDa)

9.09

Isoelectric Point (pI)

34.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Kinesin	PF00225	143 - 285	8.6e-46	Kinesin motor domain
Microtub_bd	PF16796	152 - 231	1e-15	Microtubule binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000528)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49650
fragaria_vesca	FvH4_1g18770 FvH4_1g18770 FvH4_7g34230
malus_domestica	MD01G1046900.v1.1 MD15G1305400.v1.1 MD16G1282300.v1.1
prunus_persica	Prupe.6G211700_v2.0.a1 Prupe.6G211700_v2.0.a1
pyrus_communis	pycom01g07280 pycom15g26860 pycom16g25190 pycom16g25200
rosa_chinensis	RchiOBHm_Chr1g0351151 RchiOBHm_Chr2g0109641 RchiOBHm_Chr4g0386971 RchiOBHm_Chr4g0413031 RchiOBHm_Chr4g0429541
rosa_laevigata	RLG00000007037 RLG00000009264 RLG00000009427 RLG00000015442 RLG00000017752 RLG00000017990 RLG00000022570 RLG00000028427
rosa_multiflora	Rmu_sc0000031.1_g000013 Rmu_sc0000332.1_g000058 Rmu_sc0000346.1_g000014 Rmu_sc0000698.1_g000147 Rmu_sc0001152.1_g000047 Rmu_sc0001494.1_g000003 Rmu_sc0002254.1_g000001 Rmu_sc0002531.1_g000001 Rmu_sc0002717.1_g000016 Rmu_sc0002717.1_g000017 Rmu_sc0003220.1_g000024 Rmu_sc0005016.1_g000007 Rmu_sc0005608.1_g000020 Rmu_sc0010686.1_g000003 Rmu_sc0011012.1_g000011 Rmu_sc0021503.1_g000001
rosa_roxburghii	Rroxscaffold_2G00082300 Rroxscaffold_2G00099190 Rroxscaffold_2G00129660 Rroxscaffold_2G00134070 Rroxscaffold_3G00236170 Rroxscaffold_5G00346460 Rroxscaffold_7G00156600 Rroxscaffold_7G00205430
rosa_rugosa	Rorug01G0267800 Rorug02G0020700 Rorug02G0020700 Rorug02G0161500 Rorug02G0384900 Rorug05G0567000
rosa_samantha	Rh1AG062400 Rh1AG132200 Rh1AG231500 Rh1CG126100 Rh1CG184600 Rh1CG215600 Rh1CG237400 Rh2AG213700 Rh2BG068400 Rh2BG224100 Rh2BG239600 Rh2CG069600 Rh2CG216000 Rh2CG585300 Rh2DG067600 Rh2DG219200 Rh4AG177200 Rh5AG509600 Rh5BG290500 Rh5BG328900 Rh5DG300300 Rh5DG340100 Rh6BG103200 Rh7DG421500
rosa_wichuraiana	Rw1G006030 Rw1G006580 Rw2G006320 Rw5G004390 Rw5G029130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	69
Acc36I	ACCTGC	2 cut(s)	69, 656
AccI	GTMKAC	1 cut(s)	447
AciI	CCGC	1 cut(s)	355
AclWI	GGATC	4 cut(s)	560, 713, 726, 775
AcoI	YGGCCR	1 cut(s)	706
AcsI	RAATTY	2 cut(s)	5, 635
AdeI	CACNNNGTG	1 cut(s)	203
AfiI	CCNNNNNNNGG	3 cut(s)	221, 715, 728
AflII	CTTAAG	1 cut(s)	191
AgsI	TTSAA	5 cut(s)	172, 641, 662, 695, 788
AjnI	CCWGG	2 cut(s)	154, 411
AluBI	AGCT	7 cut(s)	124, 134, 394, 406, 427, 627, 773
AluI	AGCT	7 cut(s)	124, 134, 394, 406, 427, 627, 773
Alw21I	GWGCWC	2 cut(s)	208, 629
Alw26I	GTCTC	2 cut(s)	290, 497
AlwI	GGATC	4 cut(s)	560, 713, 726, 775
Ama87I	CYCGRG	1 cut(s)	569
AoxI	GGCC	2 cut(s)	706, 745
ApeKI	GCWGC	2 cut(s)	134, 403
ApoI	RAATTY	2 cut(s)	5, 635
Asp700I	GAANNNNTTC	1 cut(s)	393
AspS9I	GGNCC	2 cut(s)	184, 212
AsuC2I	CCSGG	2 cut(s)	570, 571
AsuHPI	GGTGA	3 cut(s)	3, 50, 290
AvaI	CYCGRG	1 cut(s)	569
AvaII	GGWCC	2 cut(s)	184, 212
AxyI	CCTNAGG	1 cut(s)	749
BamHI	GGATCC	1 cut(s)	718
BanII	GRGCYC	2 cut(s)	576, 629
BbsI	GAAGAC	1 cut(s)	232
Bbv12I	GWGCWC	2 cut(s)	208, 629
BbvI	GCAGC	2 cut(s)	121, 415
BccI	CCATC	1 cut(s)	236
BceAI	ACGGC	1 cut(s)	147
BciT130I	CCWGG	2 cut(s)	156, 413
BclI	TGATCA	1 cut(s)	306
BcnI	CCSGG	2 cut(s)	570, 571
BcoDI	GTCTC	2 cut(s)	290, 497
BfrI	CTTAAG	1 cut(s)	191
BfuAI	ACCTGC	2 cut(s)	69, 656
BisI	GCNGC	3 cut(s)	135, 356, 404
BlsI	GCNGC	3 cut(s)	136, 357, 405
Bme1390I	CCNGG	4 cut(s)	156, 413, 570, 571
Bme18I	GGWCC	2 cut(s)	184, 212
BmeT110I	CYCGRG	1 cut(s)	569
BmgT120I	GGNCC	2 cut(s)	184, 212
BmiI	GGNNCC	4 cut(s)	186, 213, 214, 720
BmrFI	CCNGG	4 cut(s)	156, 413, 570, 571
BmsI	GCATC	1 cut(s)	79
BpiI	GAAGAC	1 cut(s)	232
Bpu10I	CCTNAGC	1 cut(s)	207
BpuEI	CTTGAG	1 cut(s)	417
BpuMI	CCSGG	2 cut(s)	570, 571
BsaI	GGTCTC	1 cut(s)	497
BsaJI	CCNNGG	3 cut(s)	154, 163, 569
BsaWI	WCCGGW	1 cut(s)	524
Bsc4I	CCNNNNNNNGG	3 cut(s)	221, 715, 728
Bse21I	CCTNAGG	1 cut(s)	749
Bse3DI	GCAATG	1 cut(s)	144
BseBI	CCWGG	2 cut(s)	156, 413
BseDI	CCNNGG	3 cut(s)	154, 163, 569
BseGI	GGATG	4 cut(s)	94, 317, 448, 701
BseLI	CCNNNNNNNGG	3 cut(s)	221, 715, 728
BseMI	GCAATG	1 cut(s)	144
BseMII	CTCAG	5 cut(s)	26, 214, 221, 598, 763
BseRI	GAGGAG	1 cut(s)	45
BseXI	GCAGC	2 cut(s)	121, 415
BshFI	GGCC	2 cut(s)	708, 747
BsiHKAI	GWGCWC	2 cut(s)	208, 629
BsiHKCI	CYCGRG	1 cut(s)	569
BsiSI	CCGG	3 cut(s)	525, 570, 705
BslFI	GGGAC	2 cut(s)	225, 568
BslI	CCNNNNNNNGG	3 cut(s)	221, 715, 728
BsmAI	GTCTC	2 cut(s)	290, 497
BsmFI	GGGAC	2 cut(s)	225, 568
BsnI	GGCC	2 cut(s)	708, 747
Bso31I	GGTCTC	1 cut(s)	497
BsoBI	CYCGRG	1 cut(s)	569
Bsp1286I	GDGCHC	3 cut(s)	208, 576, 629
Bsp143I	GATC	6 cut(s)	306, 471, 565, 604, 718, 780
BspACI	CCGC	1 cut(s)	355
BspANI	GGCC	2 cut(s)	708, 747
BspCNI	CTCAG	5 cut(s)	27, 213, 220, 597, 762
BspLI	GGNNCC	4 cut(s)	186, 213, 214, 720
BspMI	ACCTGC	2 cut(s)	69, 656
BspPI	GGATC	4 cut(s)	560, 713, 726, 775
BspQI	GCTCTTC	1 cut(s)	384
BspTI	CTTAAG	1 cut(s)	191
BspTNI	GGTCTC	1 cut(s)	497
BsrDI	GCAATG	1 cut(s)	144
BssECI	CCNNGG	3 cut(s)	154, 163, 569
BssMI	GATC	6 cut(s)	306, 471, 565, 604, 718, 780
Bst2UI	CCWGG	2 cut(s)	156, 413
Bst4CI	ACNGT	1 cut(s)	505
Bst6I	CTCTTC	1 cut(s)	384
BstAFI	CTTAAG	1 cut(s)	191
BstC8I	GCNNGC	3 cut(s)	126, 360, 745
BstDEI	CTNAG	5 cut(s)	35, 200, 207, 584, 749
BstDSI	CCRYGG	1 cut(s)	163
BstF5I	GGATG	4 cut(s)	94, 317, 448, 701
BstKTI	GATC	6 cut(s)	309, 474, 568, 607, 721, 783
BstMAI	GTCTC	2 cut(s)	290, 497
BstMBI	GATC	6 cut(s)	306, 471, 565, 604, 718, 780
BstMWI	GCNNNNNNNGC	3 cut(s)	70, 134, 400
BstNI	CCWGG	2 cut(s)	156, 413
BstSCI	CCNGG	4 cut(s)	154, 411, 568, 569
BstV1I	GCAGC	2 cut(s)	121, 415
BstV2I	GAAGAC	1 cut(s)	232
BstX2I	RGATCY	2 cut(s)	718, 780
BstYI	RGATCY	2 cut(s)	718, 780
Bsu36I	CCTNAGG	1 cut(s)	749
BsuRI	GGCC	2 cut(s)	708, 747
BtgI	CCRYGG	1 cut(s)	163
BtsCI	GGATG	4 cut(s)	94, 317, 448, 701
BtsI	GCAGTG	1 cut(s)	253
BtsIMutI	CAGTG	2 cut(s)	208, 253
BveI	ACCTGC	2 cut(s)	69, 656
Cac8I	GCNNGC	3 cut(s)	126, 360, 745
Cfr13I	GGNCC	2 cut(s)	184, 212
Cfr9I	CCCGGG	1 cut(s)	569
CseI	GACGC	1 cut(s)	331
CviAII	CATG	3 cut(s)	324, 488, 577
DdeI	CTNAG	5 cut(s)	35, 200, 207, 584, 749
DpnI	GATC	6 cut(s)	308, 473, 567, 606, 720, 782
DpnII	GATC	6 cut(s)	306, 471, 565, 604, 718, 780
DraIII	CACNNNGTG	1 cut(s)	203
EaeI	YGGCCR	1 cut(s)	706
Eam1104I	CTCTTC	1 cut(s)	384
EarI	CTCTTC	1 cut(s)	384
Ecl136II	GAGCTC	1 cut(s)	627
Eco24I	GRGCYC	2 cut(s)	576, 629
Eco31I	GGTCTC	1 cut(s)	497
Eco47I	GGWCC	2 cut(s)	184, 212
Eco53kI	GAGCTC	1 cut(s)	627
Eco81I	CCTNAGG	1 cut(s)	749
Eco88I	CYCGRG	1 cut(s)	569
EcoICRI	GAGCTC	1 cut(s)	627
EcoO109I	RGGNCCY	2 cut(s)	184, 212
EcoRII	CCWGG	2 cut(s)	154, 411
EcoT22I	ATGCAT	1 cut(s)	461
EcoT38I	GRGCYC	2 cut(s)	576, 629
FaeI	CATG	3 cut(s)	327, 491, 580
FalI	AAGNNNNNCTT	2 cut(s)	108, 140
FaqI	GGGAC	2 cut(s)	225, 568
FatI	CATG	3 cut(s)	323, 487, 576
FbaI	TGATCA	1 cut(s)	306
FblI	GTMKAC	1 cut(s)	447
Fnu4HI	GCNGC	3 cut(s)	135, 356, 404
FokI	GGATG	4 cut(s)	101, 304, 455, 688
FriOI	GRGCYC	2 cut(s)	576, 629
Fsp4HI	GCNGC	3 cut(s)	135, 356, 404
GluI	GCNGC	3 cut(s)	135, 356, 404
HaeIII	GGCC	2 cut(s)	708, 747
HapII	CCGG	3 cut(s)	525, 570, 705
HgaI	GACGC	1 cut(s)	331
Hin1II	CATG	3 cut(s)	327, 491, 580
HindIII	AAGCTT	1 cut(s)	122
HinfI	GANTC	2 cut(s)	168, 732
HpaII	CCGG	3 cut(s)	525, 570, 705
HphI	GGTGA	3 cut(s)	3, 50, 290
Hpy166II	GTNNAC	2 cut(s)	329, 448
Hpy188I	TCNGA	4 cut(s)	36, 88, 609, 631
Hpy188III	TCNNGA	3 cut(s)	172, 659, 722
Hpy8I	GTNNAC	2 cut(s)	329, 448
Hpy99I	CGWCG	1 cut(s)	816
HpyCH4III	ACNGT	1 cut(s)	505
HpyCH4IV	ACGT	1 cut(s)	798
HpyCH4V	TGCA	7 cut(s)	92, 137, 379, 459, 500, 592, 842
HpyF10VI	GCNNNNNNNGC	3 cut(s)	70, 134, 400
HpyF3I	CTNAG	5 cut(s)	35, 200, 207, 584, 749
HpySE526I	ACGT	1 cut(s)	798
Hsp92II	CATG	3 cut(s)	327, 491, 580
KflI	GGGWCCC	1 cut(s)	212
Ksp22I	TGATCA	1 cut(s)	306
Kzo9I	GATC	6 cut(s)	306, 471, 565, 604, 718, 780
LguI	GCTCTTC	1 cut(s)	384
LmnI	GCTCC	1 cut(s)	656
Lsp1109I	GCAGC	2 cut(s)	121, 415
LweI	GCATC	1 cut(s)	79
MaeII	ACGT	1 cut(s)	798
MaeIII	GTNAC	4 cut(s)	23, 143, 195, 643
MalI	GATC	6 cut(s)	308, 473, 567, 606, 720, 782
MboI	GATC	6 cut(s)	306, 471, 565, 604, 718, 780
MboII	GAAGA	4 cut(s)	237, 379, 401, 840
MflI	RGATCY	2 cut(s)	718, 780
MhlI	GDGCHC	3 cut(s)	208, 576, 629
MluCI	AATT	2 cut(s)	5, 635
MmeI	TCCRAC	1 cut(s)	66
MnlI	CCTC	7 cut(s)	24, 66, 331, 367, 709, 758, 826
Mph1103I	ATGCAT	1 cut(s)	461
MroXI	GAANNNNTTC	1 cut(s)	393
MseI	TTAA	3 cut(s)	120, 192, 794
MslI	CAYNNNNRTG	1 cut(s)	322
MspA1I	CMGCKG	1 cut(s)	773
MspCI	CTTAAG	1 cut(s)	191
MspI	CCGG	3 cut(s)	525, 570, 705
MspR9I	CCNGG	4 cut(s)	156, 413, 570, 571
MvaI	CCWGG	2 cut(s)	156, 413
MwoI	GCNNNNNNNGC	3 cut(s)	70, 134, 400
NciI	CCSGG	2 cut(s)	570, 571
NdeII	GATC	6 cut(s)	306, 471, 565, 604, 718, 780
NlaIII	CATG	3 cut(s)	327, 491, 580
NlaIV	GGNNCC	4 cut(s)	186, 213, 214, 720
NmuCI	GTSAC	2 cut(s)	23, 195
NsiI	ATGCAT	1 cut(s)	461
PaqCI	CACCTGC	1 cut(s)	69
PciSI	GCTCTTC	1 cut(s)	384
PdmI	GAANNNNTTC	1 cut(s)	393
PfeI	GAWTC	2 cut(s)	168, 732
PfoI	TCCNGGA	1 cut(s)	411
PkrI	GCNGC	3 cut(s)	136, 357, 405
PpuMI	RGGWCCY	2 cut(s)	184, 212
Psp124BI	GAGCTC	1 cut(s)	629
Psp5II	RGGWCCY	2 cut(s)	184, 212
Psp6I	CCWGG	2 cut(s)	154, 411
PspGI	CCWGG	2 cut(s)	154, 411
PspN4I	GGNNCC	4 cut(s)	186, 213, 214, 720
PspPI	GGNCC	2 cut(s)	184, 212
PspPPI	RGGWCCY	2 cut(s)	184, 212
PsuI	RGATCY	2 cut(s)	718, 780
PvuII	CAGCTG	1 cut(s)	773
RseI	CAYNNNNRTG	1 cut(s)	322
SacI	GAGCTC	1 cut(s)	629
SapI	GCTCTTC	1 cut(s)	384
SaqAI	TTAA	3 cut(s)	120, 192, 794
SatI	GCNGC	3 cut(s)	135, 356, 404
Sau3AI	GATC	6 cut(s)	306, 471, 565, 604, 718, 780
Sau96I	GGNCC	2 cut(s)	184, 212
ScrFI	CCNGG	4 cut(s)	156, 413, 570, 571
SduI	GDGCHC	3 cut(s)	208, 576, 629
SfaNI	GCATC	1 cut(s)	79
SinI	GGWCC	2 cut(s)	184, 212
SmaI	CCCGGG	1 cut(s)	571
SmiMI	CAYNNNNRTG	1 cut(s)	322
SmlI	CTYRAG	2 cut(s)	191, 432
SmoI	CTYRAG	2 cut(s)	191, 432
Sse9I	AATT	2 cut(s)	5, 635
SsiI	CCGC	1 cut(s)	355
SspI	AATATT	1 cut(s)	600
SstI	GAGCTC	1 cut(s)	629
StyD4I	CCNGG	4 cut(s)	154, 411, 568, 569
TaaI	ACNGT	1 cut(s)	505
TaiI	ACGT	1 cut(s)	801
TasI	AATT	2 cut(s)	5, 635
TauI	GCSGC	1 cut(s)	358
TfiI	GAWTC	2 cut(s)	168, 732
Tru1I	TTAA	3 cut(s)	120, 192, 794
Tru9I	TTAA	3 cut(s)	120, 192, 794
TscAI	CASTG	2 cut(s)	208, 253
TseFI	GTSAC	2 cut(s)	23, 195
TseI	GCWGC	2 cut(s)	134, 403
Tsp45I	GTSAC	2 cut(s)	23, 195
TspDTI	ATGAA	3 cut(s)	17, 476, 648
TspGWI	ACGGA	4 cut(s)	346, 457, 829, 845
TspMI	CCCGGG	1 cut(s)	569
TspRI	CASTG	2 cut(s)	208, 253
Vha464I	CTTAAG	1 cut(s)	191
VpaK11BI	GGWCC	2 cut(s)	184, 212
XapI	RAATTY	2 cut(s)	5, 635
XmaI	CCCGGG	1 cut(s)	569
XmiI	GTMKAC	1 cut(s)	447
XmnI	GAANNNNTTC	1 cut(s)	393
Zsp2I	ATGCAT	1 cut(s)	461

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.