Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0000528

Physical Location & Seq

Genomic Coordinates Reverse (-)

36925452 .. 36927597

Gene Structure 2146 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG290500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGGGTAACAACAACCCTGGTCGCCGTGGATTCAAGAAAGATAAGGACCCCCTTAAGTCACTCAGTGCTCAGGGACCCAAGAAAGGAAGACGGGAAAGAAAAGATGGCAGTGACAACCATAAGCAAAAAAGAAACAAAGGTGAGATACAAAACAATGAGACAGAAATGATCATATCATCATCCTCATGTGGACGGACTACTTGCGTCAAATGGTGGCGGCAAGCAGAGAAGATTGAGGTGCAATCGTTAGAAGAGCTTCCAAAGCAGCTATTCCTGGAAATATATGAGCTTTCTCAAGCAAAGGATGTCTACACAAAATGCATATCGTCCGTGATCTCTGGGGTTGTTCATGGTCTCAATGCAACTGTGTTTGCGTATGGTTCTACCGGAAGTAAGCAACAGTATGTGTTAATTCAAGGGCAACTATGTCTGTACTATGGGCAGAATTTTCGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010467 GO:0010501 GO:0016070 GO:0016072 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022613 GO:0031974 GO:0031981 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0071840 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

151

Amino Acids

17.11

Weight (kDa)

9.56

Isoelectric Point (pI)

42.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Kinesin	PF00225	97 - 135	3.4e-07	Kinesin motor domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000528)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49650
fragaria_vesca	FvH4_1g18770 FvH4_1g18770 FvH4_7g34230
malus_domestica	MD01G1046900.v1.1 MD15G1305400.v1.1 MD16G1282300.v1.1
prunus_persica	Prupe.6G211700_v2.0.a1 Prupe.6G211700_v2.0.a1
pyrus_communis	pycom01g07280 pycom15g26860 pycom16g25190 pycom16g25200
rosa_chinensis	RchiOBHm_Chr1g0351151 RchiOBHm_Chr2g0109641 RchiOBHm_Chr4g0386971 RchiOBHm_Chr4g0413031 RchiOBHm_Chr4g0429541
rosa_laevigata	RLG00000007037 RLG00000009264 RLG00000009427 RLG00000015442 RLG00000017752 RLG00000017990 RLG00000022570 RLG00000028427
rosa_multiflora	Rmu_sc0000031.1_g000013 Rmu_sc0000332.1_g000058 Rmu_sc0000346.1_g000014 Rmu_sc0000698.1_g000147 Rmu_sc0001152.1_g000047 Rmu_sc0001494.1_g000003 Rmu_sc0002254.1_g000001 Rmu_sc0002531.1_g000001 Rmu_sc0002717.1_g000016 Rmu_sc0002717.1_g000017 Rmu_sc0003220.1_g000024 Rmu_sc0005016.1_g000007 Rmu_sc0005608.1_g000020 Rmu_sc0010686.1_g000003 Rmu_sc0011012.1_g000011 Rmu_sc0021503.1_g000001
rosa_roxburghii	Rroxscaffold_2G00082300 Rroxscaffold_2G00099190 Rroxscaffold_2G00129660 Rroxscaffold_2G00134070 Rroxscaffold_3G00236170 Rroxscaffold_5G00346460 Rroxscaffold_7G00156600 Rroxscaffold_7G00205430
rosa_rugosa	Rorug01G0267800 Rorug02G0020700 Rorug02G0020700 Rorug02G0161500 Rorug02G0384900 Rorug05G0567000
rosa_samantha	Rh1AG062400 Rh1AG132200 Rh1AG231500 Rh1CG126100 Rh1CG184600 Rh1CG215600 Rh1CG237400 Rh2AG213700 Rh2BG068400 Rh2BG224100 Rh2BG239600 Rh2CG069600 Rh2CG216000 Rh2CG585300 Rh2DG067600 Rh2DG219200 Rh4AG177200 Rh5AG509600 Rh5BG290500 Rh5BG328900 Rh5DG300300 Rh5DG340100 Rh6BG103200 Rh7DG421500
rosa_wichuraiana	Rw1G006030 Rw1G006580 Rw2G006320 Rw5G004390 Rw5G029130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	309
AciI	CCGC	1 cut(s)	217
AcsI	RAATTY	1 cut(s)	445
AdeI	CACNNNGTG	1 cut(s)	65
AfaI	GTAC	1 cut(s)	434
AfiI	CCNNNNNNNGG	1 cut(s)	83
AflII	CTTAAG	1 cut(s)	53
AgsI	TTSAA	2 cut(s)	34, 416
AjnI	CCWGG	2 cut(s)	16, 273
AluBI	AGCT	3 cut(s)	256, 268, 289
AluI	AGCT	3 cut(s)	256, 268, 289
Alw21I	GWGCWC	1 cut(s)	70
Alw26I	GTCTC	2 cut(s)	152, 359
ApeKI	GCWGC	1 cut(s)	265
ApoI	RAATTY	1 cut(s)	445
Asp700I	GAANNNNTTC	1 cut(s)	255
AspS9I	GGNCC	2 cut(s)	46, 74
AsuHPI	GGTGA	1 cut(s)	152
AvaII	GGWCC	2 cut(s)	46, 74
BbsI	GAAGAC	1 cut(s)	94
Bbv12I	GWGCWC	1 cut(s)	70
BbvI	GCAGC	1 cut(s)	277
BccI	CCATC	1 cut(s)	98
BceAI	ACGGC	1 cut(s)	9
BcgI	CGANNNNNNTGC	1 cut(s)	431
BciT130I	CCWGG	2 cut(s)	18, 275
BclI	TGATCA	1 cut(s)	168
BcoDI	GTCTC	2 cut(s)	152, 359
BfrI	CTTAAG	1 cut(s)	53
BisI	GCNGC	2 cut(s)	218, 266
BlsI	GCNGC	2 cut(s)	219, 267
Bme1390I	CCNGG	2 cut(s)	18, 275
Bme18I	GGWCC	2 cut(s)	46, 74
BmgT120I	GGNCC	2 cut(s)	46, 74
BmiI	GGNNCC	3 cut(s)	48, 75, 76
BmrFI	CCNGG	2 cut(s)	18, 275
BpiI	GAAGAC	1 cut(s)	94
Bpu10I	CCTNAGC	1 cut(s)	69
BpuEI	CTTGAG	1 cut(s)	279
BsaI	GGTCTC	1 cut(s)	359
BsaJI	CCNNGG	2 cut(s)	16, 25
BsaWI	WCCGGW	1 cut(s)	386
Bsc4I	CCNNNNNNNGG	1 cut(s)	83
BseBI	CCWGG	2 cut(s)	18, 275
BseDI	CCNNGG	2 cut(s)	16, 25
BseGI	GGATG	2 cut(s)	179, 310
BseLI	CCNNNNNNNGG	1 cut(s)	83
BseMII	CTCAG	2 cut(s)	76, 83
BseXI	GCAGC	1 cut(s)	277
BsiHKAI	GWGCWC	1 cut(s)	70
BsiSI	CCGG	1 cut(s)	387
BslFI	GGGAC	1 cut(s)	87
BslI	CCNNNNNNNGG	1 cut(s)	83
BsmAI	GTCTC	2 cut(s)	152, 359
BsmFI	GGGAC	1 cut(s)	87
Bso31I	GGTCTC	1 cut(s)	359
Bsp1286I	GDGCHC	1 cut(s)	70
Bsp143I	GATC	2 cut(s)	168, 333
BspACI	CCGC	1 cut(s)	217
BspCNI	CTCAG	2 cut(s)	75, 82
BspLI	GGNNCC	3 cut(s)	48, 75, 76
BspQI	GCTCTTC	1 cut(s)	246
BspTI	CTTAAG	1 cut(s)	53
BspTNI	GGTCTC	1 cut(s)	359
BssECI	CCNNGG	2 cut(s)	16, 25
BssMI	GATC	2 cut(s)	168, 333
Bst2UI	CCWGG	2 cut(s)	18, 275
Bst4CI	ACNGT	2 cut(s)	367, 402
Bst6I	CTCTTC	1 cut(s)	246
BstAFI	CTTAAG	1 cut(s)	53
BstC8I	GCNNGC	1 cut(s)	222
BstDEI	CTNAG	2 cut(s)	62, 69
BstDSI	CCRYGG	1 cut(s)	25
BstF5I	GGATG	2 cut(s)	179, 310
BstKTI	GATC	2 cut(s)	171, 336
BstMAI	GTCTC	2 cut(s)	152, 359
BstMBI	GATC	2 cut(s)	168, 333
BstMWI	GCNNNNNNNGC	1 cut(s)	262
BstNI	CCWGG	2 cut(s)	18, 275
BstSCI	CCNGG	2 cut(s)	16, 273
BstV1I	GCAGC	1 cut(s)	277
BstV2I	GAAGAC	1 cut(s)	94
BtgI	CCRYGG	1 cut(s)	25
BtsCI	GGATG	2 cut(s)	179, 310
BtsI	GCAGTG	1 cut(s)	115
BtsIMutI	CAGTG	2 cut(s)	70, 115
Cac8I	GCNNGC	1 cut(s)	222
Cfr13I	GGNCC	2 cut(s)	46, 74
CseI	GACGC	1 cut(s)	193
Csp6I	GTAC	1 cut(s)	433
CviAII	CATG	2 cut(s)	186, 350
CviJI	RGCY	3 cut(s)	256, 268, 289
CviKI_1	RGCY	3 cut(s)	256, 268, 289
CviQI	GTAC	1 cut(s)	433
DdeI	CTNAG	2 cut(s)	62, 69
DpnI	GATC	2 cut(s)	170, 335
DpnII	GATC	2 cut(s)	168, 333
DraIII	CACNNNGTG	1 cut(s)	65
Eam1104I	CTCTTC	1 cut(s)	246
EarI	CTCTTC	1 cut(s)	246
Eco31I	GGTCTC	1 cut(s)	359
Eco47I	GGWCC	2 cut(s)	46, 74
EcoO109I	RGGNCCY	2 cut(s)	46, 74
EcoRII	CCWGG	2 cut(s)	16, 273
EcoT22I	ATGCAT	1 cut(s)	323
FaeI	CATG	2 cut(s)	189, 353
FaqI	GGGAC	1 cut(s)	87
FatI	CATG	2 cut(s)	185, 349
FbaI	TGATCA	1 cut(s)	168
FblI	GTMKAC	1 cut(s)	309
Fnu4HI	GCNGC	2 cut(s)	218, 266
FokI	GGATG	2 cut(s)	166, 317
Fsp4HI	GCNGC	2 cut(s)	218, 266
GluI	GCNGC	2 cut(s)	218, 266
HapII	CCGG	1 cut(s)	387
HgaI	GACGC	1 cut(s)	193
Hin1II	CATG	2 cut(s)	189, 353
HinfI	GANTC	1 cut(s)	30
HpaII	CCGG	1 cut(s)	387
HphI	GGTGA	1 cut(s)	152
Hpy166II	GTNNAC	2 cut(s)	191, 310
Hpy188III	TCNNGA	1 cut(s)	34
Hpy8I	GTNNAC	2 cut(s)	191, 310
HpyCH4III	ACNGT	2 cut(s)	367, 402
HpyCH4V	TGCA	3 cut(s)	241, 321, 362
HpyF10VI	GCNNNNNNNGC	1 cut(s)	262
HpyF3I	CTNAG	2 cut(s)	62, 69
Hsp92II	CATG	2 cut(s)	189, 353
KflI	GGGWCCC	1 cut(s)	74
Ksp22I	TGATCA	1 cut(s)	168
Kzo9I	GATC	2 cut(s)	168, 333
LguI	GCTCTTC	1 cut(s)	246
LpnPI	CCDG	7 cut(s)	3, 30, 56, 260, 287, 324, 400
Lsp1109I	GCAGC	1 cut(s)	277
MaeIII	GTNAC	3 cut(s)	5, 57, 110
MalI	GATC	2 cut(s)	170, 335
MboI	GATC	2 cut(s)	168, 333
MboII	GAAGA	3 cut(s)	99, 241, 263
MhlI	GDGCHC	1 cut(s)	70
MluCI	AATT	2 cut(s)	411, 445
MnlI	CCTC	2 cut(s)	193, 229
Mph1103I	ATGCAT	1 cut(s)	323
MroXI	GAANNNNTTC	1 cut(s)	255
MseI	TTAA	2 cut(s)	54, 410
MslI	CAYNNNNRTG	1 cut(s)	184
MspCI	CTTAAG	1 cut(s)	53
MspI	CCGG	1 cut(s)	387
MspR9I	CCNGG	2 cut(s)	18, 275
MvaI	CCWGG	2 cut(s)	18, 275
MwoI	GCNNNNNNNGC	1 cut(s)	262
NdeII	GATC	2 cut(s)	168, 333
NlaIII	CATG	2 cut(s)	189, 353
NlaIV	GGNNCC	3 cut(s)	48, 75, 76
NmuCI	GTSAC	2 cut(s)	57, 110
NsiI	ATGCAT	1 cut(s)	323
PciSI	GCTCTTC	1 cut(s)	246
PdmI	GAANNNNTTC	1 cut(s)	255
PfeI	GAWTC	1 cut(s)	30
PfoI	TCCNGGA	1 cut(s)	273
PkrI	GCNGC	2 cut(s)	219, 267
PpuMI	RGGWCCY	2 cut(s)	46, 74
Psp5II	RGGWCCY	2 cut(s)	46, 74
Psp6I	CCWGG	2 cut(s)	16, 273
PspGI	CCWGG	2 cut(s)	16, 273
PspN4I	GGNNCC	3 cut(s)	48, 75, 76
PspPI	GGNCC	2 cut(s)	46, 74
PspPPI	RGGWCCY	2 cut(s)	46, 74
RsaI	GTAC	1 cut(s)	434
RsaNI	GTAC	1 cut(s)	433
RseI	CAYNNNNRTG	1 cut(s)	184
SapI	GCTCTTC	1 cut(s)	246
SaqAI	TTAA	2 cut(s)	54, 410
SatI	GCNGC	2 cut(s)	218, 266
Sau3AI	GATC	2 cut(s)	168, 333
Sau96I	GGNCC	2 cut(s)	46, 74
ScrFI	CCNGG	2 cut(s)	18, 275
SduI	GDGCHC	1 cut(s)	70
SetI	ASST	5 cut(s)	142, 240, 258, 270, 291
SinI	GGWCC	2 cut(s)	46, 74
SmiMI	CAYNNNNRTG	1 cut(s)	184
SmlI	CTYRAG	2 cut(s)	53, 294
SmoI	CTYRAG	2 cut(s)	53, 294
Sse9I	AATT	2 cut(s)	411, 445
SsiI	CCGC	1 cut(s)	217
StyD4I	CCNGG	2 cut(s)	16, 273
TaaI	ACNGT	2 cut(s)	367, 402
TasI	AATT	2 cut(s)	411, 445
TatI	WGTACW	1 cut(s)	432
TauI	GCSGC	1 cut(s)	220
TfiI	GAWTC	1 cut(s)	30
Tru1I	TTAA	2 cut(s)	54, 410
Tru9I	TTAA	2 cut(s)	54, 410
TscAI	CASTG	2 cut(s)	70, 115
TseFI	GTSAC	2 cut(s)	57, 110
TseI	GCWGC	1 cut(s)	265
Tsp45I	GTSAC	2 cut(s)	57, 110
TspDTI	ATGAA	1 cut(s)	338
TspGWI	ACGGA	2 cut(s)	208, 319
TspRI	CASTG	2 cut(s)	70, 115
Vha464I	CTTAAG	1 cut(s)	53
VpaK11BI	GGWCC	2 cut(s)	46, 74
XapI	RAATTY	1 cut(s)	445
XmiI	GTMKAC	1 cut(s)	309
XmnI	GAANNNNTTC	1 cut(s)	255
Zsp2I	ATGCAT	1 cut(s)	323

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.