Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0000528

Physical Location & Seq

Genomic Coordinates Reverse (-)

13493775 .. 13496576

Gene Structure 2802 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G006580.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

ATGGGTAACAACAACCCTGGTCGCCGTGGATTCAAGAAAGATAAGGACCCCCTTAAGTCACTCAGTGCTCAGGGACCCAAGAAAGGAAGACGGGAAAGAAAAGATGGCAGTGACAACCATAAGCAAAAAAGAAACAAAGGTGAGATACAAAACAATGAGACAGAAATTATCATATCATCATCCTCATATGGACGGACTACTTGCGTCAAATGGTGGCGGCAAGCAGAGAAGATTGAGGTGCAATCGTTAGAAGAGCTTCCAAAGCAGCTATTCCTGGAAATATATGAGCTTTCTCAAGCAAAGGATGTCTACACAAAATGCATATCGTCCGTGATCTTTGGGGTTGTTCATGGTCTCAATGCAACTGTGTTTGCGTATGGTTCTACCGGAAGTGGTAAAACATATACAATGGTGGGGACACAAAATGATCCCGGGCTCATGGTTCTCAGTTTGCATACAATATTTGATCTGATAAAAAAGGACAAGAGCTCTGATGAATTTGAAGTTACCTGCTCCTATCTTGAACTCTATAACGAAGTTATCTATGATTTGCTTGAAAAGTCATCCGGCCATTTGGAACTCAGAGAGGATCCAGAGCAAGGAATCATTGTTGCTGGCCTTAGGTGTATAAAGGTTCATTCAGCTGATAAGATCCTTGAACTCTTAAACGTGGGGAACAGCCGACGGAAAACTGAAAGCACGGAGGCTAATGCAACATCTTCTCGTGGGCGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000070 GO:0000226 GO:0000278 GO:0000280 GO:0000819 GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005871 GO:0005875 GO:0005929 GO:0006928 GO:0006996 GO:0007010 GO:0007017 GO:0007018 GO:0007019 GO:0007049 GO:0007059 GO:0008150 GO:0008574 GO:0009987 GO:0010938 GO:0015630 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022402 GO:0022411 GO:0030030 GO:0031109 GO:0031122 GO:0032984 GO:0032991 GO:0042623 GO:0042995 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043624 GO:0043933 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0044782 GO:0048285 GO:0051261 GO:0051276 GO:0060404 GO:0061523 GO:0070462 GO:0071840 GO:0097435 GO:0098813 GO:0120025 GO:0120036 GO:0140014 GO:1903008 GO:1903047 GO:1990939

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kinesin

Protein Analysis

244

Amino Acids

27.38

Weight (kDa)

8.74

Isoelectric Point (pI)

35.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Kinesin	PF00225	97 - 242	2.6e-49	Kinesin motor domain
Microtub_bd	PF16796	114 - 185	5.6e-16	Microtubule binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000528)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49650
fragaria_vesca	FvH4_1g18770 FvH4_1g18770 FvH4_7g34230
malus_domestica	MD01G1046900.v1.1 MD15G1305400.v1.1 MD16G1282300.v1.1
prunus_persica	Prupe.6G211700_v2.0.a1 Prupe.6G211700_v2.0.a1
pyrus_communis	pycom01g07280 pycom15g26860 pycom16g25190 pycom16g25200
rosa_chinensis	RchiOBHm_Chr1g0351151 RchiOBHm_Chr2g0109641 RchiOBHm_Chr4g0386971 RchiOBHm_Chr4g0413031 RchiOBHm_Chr4g0429541
rosa_laevigata	RLG00000007037 RLG00000009264 RLG00000009427 RLG00000015442 RLG00000017752 RLG00000017990 RLG00000022570 RLG00000028427
rosa_multiflora	Rmu_sc0000031.1_g000013 Rmu_sc0000332.1_g000058 Rmu_sc0000346.1_g000014 Rmu_sc0000698.1_g000147 Rmu_sc0001152.1_g000047 Rmu_sc0001494.1_g000003 Rmu_sc0002254.1_g000001 Rmu_sc0002531.1_g000001 Rmu_sc0002717.1_g000016 Rmu_sc0002717.1_g000017 Rmu_sc0003220.1_g000024 Rmu_sc0005016.1_g000007 Rmu_sc0005608.1_g000020 Rmu_sc0010686.1_g000003 Rmu_sc0011012.1_g000011 Rmu_sc0021503.1_g000001
rosa_roxburghii	Rroxscaffold_2G00082300 Rroxscaffold_2G00099190 Rroxscaffold_2G00129660 Rroxscaffold_2G00134070 Rroxscaffold_3G00236170 Rroxscaffold_5G00346460 Rroxscaffold_7G00156600 Rroxscaffold_7G00205430
rosa_rugosa	Rorug01G0267800 Rorug02G0020700 Rorug02G0020700 Rorug02G0161500 Rorug02G0384900 Rorug05G0567000
rosa_samantha	Rh1AG062400 Rh1AG132200 Rh1AG231500 Rh1CG126100 Rh1CG184600 Rh1CG215600 Rh1CG237400 Rh2AG213700 Rh2BG068400 Rh2BG224100 Rh2BG239600 Rh2CG069600 Rh2CG216000 Rh2CG585300 Rh2DG067600 Rh2DG219200 Rh4AG177200 Rh5AG509600 Rh5BG290500 Rh5BG328900 Rh5DG300300 Rh5DG340100 Rh6BG103200 Rh7DG421500
rosa_wichuraiana	Rw1G006030 Rw1G006580 Rw2G006320 Rw5G004390 Rw5G029130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	518
AccI	GTMKAC	1 cut(s)	309
AciI	CCGC	2 cut(s)	217, 730
AclWI	GGATC	4 cut(s)	422, 584, 597, 646
AcoI	YGGCCR	1 cut(s)	568
AcsI	RAATTY	1 cut(s)	497
AdeI	CACNNNGTG	1 cut(s)	65
AfiI	CCNNNNNNNGG	2 cut(s)	83, 599
AflII	CTTAAG	1 cut(s)	53
AgsI	TTSAA	5 cut(s)	34, 503, 524, 557, 659
AjnI	CCWGG	2 cut(s)	16, 273
AluBI	AGCT	5 cut(s)	256, 268, 289, 489, 644
AluI	AGCT	5 cut(s)	256, 268, 289, 489, 644
Alw21I	GWGCWC	2 cut(s)	70, 491
Alw26I	GTCTC	2 cut(s)	152, 359
AlwI	GGATC	4 cut(s)	422, 584, 597, 646
Ama87I	CYCGRG	1 cut(s)	431
AoxI	GGCC	2 cut(s)	568, 616
ApeKI	GCWGC	1 cut(s)	265
ApoI	RAATTY	1 cut(s)	497
Asp700I	GAANNNNTTC	1 cut(s)	255
AspS9I	GGNCC	2 cut(s)	46, 74
AsuC2I	CCSGG	2 cut(s)	432, 433
AsuHPI	GGTGA	1 cut(s)	152
AvaI	CYCGRG	1 cut(s)	431
AvaII	GGWCC	2 cut(s)	46, 74
AxyI	CCTNAGG	1 cut(s)	620
BamHI	GGATCC	1 cut(s)	589
BanII	GRGCYC	2 cut(s)	438, 491
BauI	CACGAG	1 cut(s)	723
BbsI	GAAGAC	1 cut(s)	94
Bbv12I	GWGCWC	2 cut(s)	70, 491
BbvI	GCAGC	1 cut(s)	277
BccI	CCATC	1 cut(s)	98
BceAI	ACGGC	1 cut(s)	9
BciT130I	CCWGG	2 cut(s)	18, 275
BcnI	CCSGG	2 cut(s)	432, 433
BcoDI	GTCTC	2 cut(s)	152, 359
BfrI	CTTAAG	1 cut(s)	53
BfuAI	ACCTGC	1 cut(s)	518
BisI	GCNGC	2 cut(s)	218, 266
BlsI	GCNGC	2 cut(s)	219, 267
Bme1390I	CCNGG	4 cut(s)	18, 275, 432, 433
Bme18I	GGWCC	2 cut(s)	46, 74
BmeT110I	CYCGRG	1 cut(s)	431
BmgT120I	GGNCC	2 cut(s)	46, 74
BmiI	GGNNCC	4 cut(s)	48, 75, 76, 591
BmrFI	CCNGG	4 cut(s)	18, 275, 432, 433
BpiI	GAAGAC	1 cut(s)	94
Bpu10I	CCTNAGC	1 cut(s)	69
BpuEI	CTTGAG	1 cut(s)	279
BpuMI	CCSGG	2 cut(s)	432, 433
BsaI	GGTCTC	1 cut(s)	359
BsaJI	CCNNGG	3 cut(s)	16, 25, 431
BsaWI	WCCGGW	1 cut(s)	386
Bsc4I	CCNNNNNNNGG	2 cut(s)	83, 599
Bse21I	CCTNAGG	1 cut(s)	620
BseBI	CCWGG	2 cut(s)	18, 275
BseDI	CCNNGG	3 cut(s)	16, 25, 431
BseGI	GGATG	3 cut(s)	179, 310, 563
BseLI	CCNNNNNNNGG	2 cut(s)	83, 599
BseMII	CTCAG	4 cut(s)	76, 83, 460, 595
BseXI	GCAGC	1 cut(s)	277
BshFI	GGCC	2 cut(s)	570, 618
BsiHKAI	GWGCWC	2 cut(s)	70, 491
BsiHKCI	CYCGRG	1 cut(s)	431
BsiSI	CCGG	3 cut(s)	387, 432, 567
BslFI	GGGAC	2 cut(s)	87, 430
BslI	CCNNNNNNNGG	2 cut(s)	83, 599
BsmAI	GTCTC	2 cut(s)	152, 359
BsmFI	GGGAC	2 cut(s)	87, 430
BsnI	GGCC	2 cut(s)	570, 618
Bso31I	GGTCTC	1 cut(s)	359
BsoBI	CYCGRG	1 cut(s)	431
Bsp1286I	GDGCHC	3 cut(s)	70, 438, 491
Bsp143I	GATC	5 cut(s)	333, 427, 466, 589, 651
BspACI	CCGC	2 cut(s)	217, 730
BspANI	GGCC	2 cut(s)	570, 618
BspCNI	CTCAG	4 cut(s)	75, 82, 459, 594
BspLI	GGNNCC	4 cut(s)	48, 75, 76, 591
BspMI	ACCTGC	1 cut(s)	518
BspPI	GGATC	4 cut(s)	422, 584, 597, 646
BspQI	GCTCTTC	1 cut(s)	246
BspTI	CTTAAG	1 cut(s)	53
BspTNI	GGTCTC	1 cut(s)	359
BssECI	CCNNGG	3 cut(s)	16, 25, 431
BssMI	GATC	5 cut(s)	333, 427, 466, 589, 651
BssSI	CACGAG	1 cut(s)	723
Bst2BI	CACGAG	1 cut(s)	723
Bst2UI	CCWGG	2 cut(s)	18, 275
Bst4CI	ACNGT	1 cut(s)	367
Bst6I	CTCTTC	1 cut(s)	246
BstAFI	CTTAAG	1 cut(s)	53
BstC8I	GCNNGC	2 cut(s)	222, 616
BstDEI	CTNAG	5 cut(s)	62, 69, 446, 581, 620
BstDSI	CCRYGG	1 cut(s)	25
BstF5I	GGATG	3 cut(s)	179, 310, 563
BstKTI	GATC	5 cut(s)	336, 430, 469, 592, 654
BstMAI	GTCTC	2 cut(s)	152, 359
BstMBI	GATC	5 cut(s)	333, 427, 466, 589, 651
BstMWI	GCNNNNNNNGC	1 cut(s)	262
BstNI	CCWGG	2 cut(s)	18, 275
BstSCI	CCNGG	4 cut(s)	16, 273, 430, 431
BstV1I	GCAGC	1 cut(s)	277
BstV2I	GAAGAC	1 cut(s)	94
BstX2I	RGATCY	2 cut(s)	589, 651
BstYI	RGATCY	2 cut(s)	589, 651
Bsu36I	CCTNAGG	1 cut(s)	620
BsuRI	GGCC	2 cut(s)	570, 618
BtgI	CCRYGG	1 cut(s)	25
BtsCI	GGATG	3 cut(s)	179, 310, 563
BtsI	GCAGTG	1 cut(s)	115
BtsIMutI	CAGTG	2 cut(s)	70, 115
BveI	ACCTGC	1 cut(s)	518
Cac8I	GCNNGC	2 cut(s)	222, 616
Cfr13I	GGNCC	2 cut(s)	46, 74
Cfr9I	CCCGGG	1 cut(s)	431
CseI	GACGC	1 cut(s)	193
CviAII	CATG	2 cut(s)	350, 439
DdeI	CTNAG	5 cut(s)	62, 69, 446, 581, 620
DpnI	GATC	5 cut(s)	335, 429, 468, 591, 653
DpnII	GATC	5 cut(s)	333, 427, 466, 589, 651
DraIII	CACNNNGTG	1 cut(s)	65
EaeI	YGGCCR	1 cut(s)	568
Eam1104I	CTCTTC	1 cut(s)	246
EarI	CTCTTC	1 cut(s)	246
Ecl136II	GAGCTC	1 cut(s)	489
Eco24I	GRGCYC	2 cut(s)	438, 491
Eco31I	GGTCTC	1 cut(s)	359
Eco47I	GGWCC	2 cut(s)	46, 74
Eco53kI	GAGCTC	1 cut(s)	489
Eco81I	CCTNAGG	1 cut(s)	620
Eco88I	CYCGRG	1 cut(s)	431
EcoICRI	GAGCTC	1 cut(s)	489
EcoO109I	RGGNCCY	2 cut(s)	46, 74
EcoRII	CCWGG	2 cut(s)	16, 273
EcoT22I	ATGCAT	1 cut(s)	323
EcoT38I	GRGCYC	2 cut(s)	438, 491
FaeI	CATG	2 cut(s)	353, 442
FaqI	GGGAC	2 cut(s)	87, 430
FatI	CATG	2 cut(s)	349, 438
FauNDI	CATATG	1 cut(s)	187
FblI	GTMKAC	1 cut(s)	309
Fnu4HI	GCNGC	2 cut(s)	218, 266
FokI	GGATG	3 cut(s)	166, 317, 550
FriOI	GRGCYC	2 cut(s)	438, 491
Fsp4HI	GCNGC	2 cut(s)	218, 266
GluI	GCNGC	2 cut(s)	218, 266
HaeIII	GGCC	2 cut(s)	570, 618
HapII	CCGG	3 cut(s)	387, 432, 567
HgaI	GACGC	1 cut(s)	193
Hin1II	CATG	2 cut(s)	353, 442
HinfI	GANTC	2 cut(s)	30, 603
HpaII	CCGG	3 cut(s)	387, 432, 567
HphI	GGTGA	1 cut(s)	152
Hpy166II	GTNNAC	1 cut(s)	310
Hpy188I	TCNGA	3 cut(s)	471, 493, 584
Hpy188III	TCNNGA	3 cut(s)	34, 521, 593
Hpy8I	GTNNAC	1 cut(s)	310
Hpy99I	CGWCG	1 cut(s)	687
HpyCH4III	ACNGT	1 cut(s)	367
HpyCH4IV	ACGT	1 cut(s)	669
HpyCH4V	TGCA	5 cut(s)	241, 321, 362, 454, 713
HpyF10VI	GCNNNNNNNGC	1 cut(s)	262
HpyF3I	CTNAG	5 cut(s)	62, 69, 446, 581, 620
HpySE526I	ACGT	1 cut(s)	669
Hsp92II	CATG	2 cut(s)	353, 442
KflI	GGGWCCC	1 cut(s)	74
Kzo9I	GATC	5 cut(s)	333, 427, 466, 589, 651
LguI	GCTCTTC	1 cut(s)	246
LmnI	GCTCC	1 cut(s)	518
Lsp1109I	GCAGC	1 cut(s)	277
MaeII	ACGT	1 cut(s)	669
MaeIII	GTNAC	4 cut(s)	5, 57, 110, 505
MalI	GATC	5 cut(s)	335, 429, 468, 591, 653
MboI	GATC	5 cut(s)	333, 427, 466, 589, 651
MboII	GAAGA	4 cut(s)	99, 241, 263, 711
MflI	RGATCY	2 cut(s)	589, 651
MhlI	GDGCHC	3 cut(s)	70, 438, 491
MluCI	AATT	2 cut(s)	165, 497
MnlI	CCTC	4 cut(s)	193, 229, 580, 697
Mph1103I	ATGCAT	1 cut(s)	323
MroXI	GAANNNNTTC	1 cut(s)	255
MseI	TTAA	2 cut(s)	54, 665
MspA1I	CMGCKG	1 cut(s)	644
MspCI	CTTAAG	1 cut(s)	53
MspI	CCGG	3 cut(s)	387, 432, 567
MspR9I	CCNGG	4 cut(s)	18, 275, 432, 433
MvaI	CCWGG	2 cut(s)	18, 275
MwoI	GCNNNNNNNGC	1 cut(s)	262
NciI	CCSGG	2 cut(s)	432, 433
NdeI	CATATG	1 cut(s)	187
NdeII	GATC	5 cut(s)	333, 427, 466, 589, 651
NlaIII	CATG	2 cut(s)	353, 442
NlaIV	GGNNCC	4 cut(s)	48, 75, 76, 591
NmuCI	GTSAC	2 cut(s)	57, 110
NsiI	ATGCAT	1 cut(s)	323
PciSI	GCTCTTC	1 cut(s)	246
PdmI	GAANNNNTTC	1 cut(s)	255
PfeI	GAWTC	2 cut(s)	30, 603
PfoI	TCCNGGA	1 cut(s)	273
PkrI	GCNGC	2 cut(s)	219, 267
PpuMI	RGGWCCY	2 cut(s)	46, 74
Psp124BI	GAGCTC	1 cut(s)	491
Psp5II	RGGWCCY	2 cut(s)	46, 74
Psp6I	CCWGG	2 cut(s)	16, 273
PspGI	CCWGG	2 cut(s)	16, 273
PspN4I	GGNNCC	4 cut(s)	48, 75, 76, 591
PspPI	GGNCC	2 cut(s)	46, 74
PspPPI	RGGWCCY	2 cut(s)	46, 74
PsuI	RGATCY	2 cut(s)	589, 651
PvuII	CAGCTG	1 cut(s)	644
SacI	GAGCTC	1 cut(s)	491
SapI	GCTCTTC	1 cut(s)	246
SaqAI	TTAA	2 cut(s)	54, 665
SatI	GCNGC	2 cut(s)	218, 266
Sau3AI	GATC	5 cut(s)	333, 427, 466, 589, 651
Sau96I	GGNCC	2 cut(s)	46, 74
ScrFI	CCNGG	4 cut(s)	18, 275, 432, 433
SduI	GDGCHC	3 cut(s)	70, 438, 491
SinI	GGWCC	2 cut(s)	46, 74
SmaI	CCCGGG	1 cut(s)	433
SmlI	CTYRAG	2 cut(s)	53, 294
SmoI	CTYRAG	2 cut(s)	53, 294
Sse9I	AATT	2 cut(s)	165, 497
SsiI	CCGC	2 cut(s)	217, 730
SspI	AATATT	1 cut(s)	462
SstI	GAGCTC	1 cut(s)	491
StyD4I	CCNGG	4 cut(s)	16, 273, 430, 431
TaaI	ACNGT	1 cut(s)	367
TaiI	ACGT	1 cut(s)	672
TasI	AATT	2 cut(s)	165, 497
TauI	GCSGC	1 cut(s)	220
TfiI	GAWTC	2 cut(s)	30, 603
Tru1I	TTAA	2 cut(s)	54, 665
Tru9I	TTAA	2 cut(s)	54, 665
TscAI	CASTG	2 cut(s)	70, 115
TseFI	GTSAC	2 cut(s)	57, 110
TseI	GCWGC	1 cut(s)	265
Tsp45I	GTSAC	2 cut(s)	57, 110
TspDTI	ATGAA	3 cut(s)	338, 510, 626
TspGWI	ACGGA	4 cut(s)	208, 319, 700, 716
TspMI	CCCGGG	1 cut(s)	431
TspRI	CASTG	2 cut(s)	70, 115
Vha464I	CTTAAG	1 cut(s)	53
VpaK11BI	GGWCC	2 cut(s)	46, 74
XapI	RAATTY	1 cut(s)	497
XmaI	CCCGGG	1 cut(s)	431
XmiI	GTMKAC	1 cut(s)	309
XmnI	GAANNNNTTC	1 cut(s)	255
Zsp2I	ATGCAT	1 cut(s)	323

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.