Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005016.1

Orthogroup ID

OG0000528

Physical Location & Seq

Genomic Coordinates Forward (+)

47418 .. 47803

Gene Structure 386 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005016.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 282 bp

atgaaattctcacctctaaaaagtgacaaggttctgagcaagaagccccctactcctcacctgcgagttgtgcctgattatctgttggatgcaacaactaaagaagccaacgagagagctaagcttgcgagtgctgcaatgggtaacaacaaccctggtcgccgtggattcaagaaagataaggacccccttaagtcactcagtgctcagggacccaagaaaggaagacgggaaagaaaagatggcagtgacaaccataagcaaaaaaggcaaaagacttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010467 GO:0010501 GO:0016070 GO:0016072 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022613 GO:0031974 GO:0031981 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0071840 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

93

Amino Acids

10.42

Weight (kDa)

10.51

Isoelectric Point (pI)

32.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000528)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49650
fragaria_vesca	FvH4_1g18770 FvH4_1g18770 FvH4_7g34230
malus_domestica	MD01G1046900.v1.1 MD15G1305400.v1.1 MD16G1282300.v1.1
prunus_persica	Prupe.6G211700_v2.0.a1 Prupe.6G211700_v2.0.a1
pyrus_communis	pycom01g07280 pycom15g26860 pycom16g25190 pycom16g25200
rosa_chinensis	RchiOBHm_Chr1g0351151 RchiOBHm_Chr2g0109641 RchiOBHm_Chr4g0386971 RchiOBHm_Chr4g0413031 RchiOBHm_Chr4g0429541
rosa_laevigata	RLG00000007037 RLG00000009264 RLG00000009427 RLG00000015442 RLG00000017752 RLG00000017990 RLG00000022570 RLG00000028427
rosa_multiflora	Rmu_sc0000031.1_g000013 Rmu_sc0000332.1_g000058 Rmu_sc0000346.1_g000014 Rmu_sc0000698.1_g000147 Rmu_sc0001152.1_g000047 Rmu_sc0001494.1_g000003 Rmu_sc0002254.1_g000001 Rmu_sc0002531.1_g000001 Rmu_sc0002717.1_g000016 Rmu_sc0002717.1_g000017 Rmu_sc0003220.1_g000024 Rmu_sc0005016.1_g000007 Rmu_sc0005608.1_g000020 Rmu_sc0010686.1_g000003 Rmu_sc0011012.1_g000011 Rmu_sc0021503.1_g000001
rosa_roxburghii	Rroxscaffold_2G00082300 Rroxscaffold_2G00099190 Rroxscaffold_2G00129660 Rroxscaffold_2G00134070 Rroxscaffold_3G00236170 Rroxscaffold_5G00346460 Rroxscaffold_7G00156600 Rroxscaffold_7G00205430
rosa_rugosa	Rorug01G0267800 Rorug02G0020700 Rorug02G0020700 Rorug02G0161500 Rorug02G0384900 Rorug05G0567000
rosa_samantha	Rh1AG062400 Rh1AG132200 Rh1AG231500 Rh1CG126100 Rh1CG184600 Rh1CG215600 Rh1CG237400 Rh2AG213700 Rh2BG068400 Rh2BG224100 Rh2BG239600 Rh2CG069600 Rh2CG216000 Rh2CG585300 Rh2DG067600 Rh2DG219200 Rh4AG177200 Rh5AG509600 Rh5BG290500 Rh5BG328900 Rh5DG300300 Rh5DG340100 Rh6BG103200 Rh7DG421500
rosa_wichuraiana	Rw1G006030 Rw1G006580 Rw2G006320 Rw5G004390 Rw5G029130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	69
Acc36I	ACCTGC	1 cut(s)	69
AcsI	RAATTY	1 cut(s)	5
AdeI	CACNNNGTG	1 cut(s)	203
AfiI	CCNNNNNNNGG	1 cut(s)	221
AflII	CTTAAG	1 cut(s)	191
AgsI	TTSAA	1 cut(s)	172
AjnI	CCWGG	1 cut(s)	154
AluBI	AGCT	2 cut(s)	119, 124
AluI	AGCT	2 cut(s)	119, 124
Alw21I	GWGCWC	1 cut(s)	208
ApeKI	GCWGC	1 cut(s)	134
ApoI	RAATTY	1 cut(s)	5
AspS9I	GGNCC	2 cut(s)	184, 212
AsuHPI	GGTGA	2 cut(s)	3, 50
AvaII	GGWCC	2 cut(s)	184, 212
BbsI	GAAGAC	1 cut(s)	232
Bbv12I	GWGCWC	1 cut(s)	208
BbvI	GCAGC	1 cut(s)	121
BccI	CCATC	1 cut(s)	236
BceAI	ACGGC	1 cut(s)	147
BciT130I	CCWGG	1 cut(s)	156
BfrI	CTTAAG	1 cut(s)	191
BfuAI	ACCTGC	1 cut(s)	69
BisI	GCNGC	1 cut(s)	135
BlpI	GCTNAGC	1 cut(s)	120
BlsI	GCNGC	1 cut(s)	136
Bme1390I	CCNGG	1 cut(s)	156
Bme18I	GGWCC	2 cut(s)	184, 212
BmgT120I	GGNCC	2 cut(s)	184, 212
BmiI	GGNNCC	3 cut(s)	186, 213, 214
BmrFI	CCNGG	1 cut(s)	156
BmsI	GCATC	1 cut(s)	79
BpiI	GAAGAC	1 cut(s)	232
Bpu10I	CCTNAGC	1 cut(s)	207
Bpu1102I	GCTNAGC	1 cut(s)	120
BsaJI	CCNNGG	2 cut(s)	154, 163
Bsc4I	CCNNNNNNNGG	1 cut(s)	221
Bse3DI	GCAATG	1 cut(s)	144
BseBI	CCWGG	1 cut(s)	156
BseDI	CCNNGG	2 cut(s)	154, 163
BseGI	GGATG	1 cut(s)	94
BseLI	CCNNNNNNNGG	1 cut(s)	221
BseMI	GCAATG	1 cut(s)	144
BseMII	CTCAG	3 cut(s)	26, 214, 221
BseRI	GAGGAG	1 cut(s)	45
BseXI	GCAGC	1 cut(s)	121
BsiHKAI	GWGCWC	1 cut(s)	208
BslFI	GGGAC	1 cut(s)	225
BslI	CCNNNNNNNGG	1 cut(s)	221
BsmFI	GGGAC	1 cut(s)	225
Bsp1286I	GDGCHC	1 cut(s)	208
Bsp1720I	GCTNAGC	1 cut(s)	120
BspCNI	CTCAG	3 cut(s)	27, 213, 220
BspLI	GGNNCC	3 cut(s)	186, 213, 214
BspMI	ACCTGC	1 cut(s)	69
BspTI	CTTAAG	1 cut(s)	191
BsrDI	GCAATG	1 cut(s)	144
BssECI	CCNNGG	2 cut(s)	154, 163
Bst2UI	CCWGG	1 cut(s)	156
BstAFI	CTTAAG	1 cut(s)	191
BstC8I	GCNNGC	1 cut(s)	126
BstDEI	CTNAG	4 cut(s)	35, 120, 200, 207
BstDSI	CCRYGG	1 cut(s)	163
BstF5I	GGATG	1 cut(s)	94
BstMWI	GCNNNNNNNGC	4 cut(s)	70, 125, 134, 268
BstNI	CCWGG	1 cut(s)	156
BstSCI	CCNGG	1 cut(s)	154
BstV1I	GCAGC	1 cut(s)	121
BstV2I	GAAGAC	1 cut(s)	232
BtgI	CCRYGG	1 cut(s)	163
BtsCI	GGATG	1 cut(s)	94
BtsI	GCAGTG	1 cut(s)	253
BtsIMutI	CAGTG	2 cut(s)	208, 253
BveI	ACCTGC	1 cut(s)	69
Cac8I	GCNNGC	1 cut(s)	126
Cfr13I	GGNCC	2 cut(s)	184, 212
CviJI	RGCY	4 cut(s)	46, 107, 119, 124
CviKI_1	RGCY	4 cut(s)	46, 107, 119, 124
DdeI	CTNAG	4 cut(s)	35, 120, 200, 207
DraIII	CACNNNGTG	1 cut(s)	203
Eco47I	GGWCC	2 cut(s)	184, 212
EcoO109I	RGGNCCY	2 cut(s)	184, 212
EcoRII	CCWGG	1 cut(s)	154
FaiI	YATR	1 cut(s)	258
FaqI	GGGAC	1 cut(s)	225
Fnu4HI	GCNGC	1 cut(s)	135
FokI	GGATG	1 cut(s)	101
Fsp4HI	GCNGC	1 cut(s)	135
GluI	GCNGC	1 cut(s)	135
HindIII	AAGCTT	1 cut(s)	122
HinfI	GANTC	1 cut(s)	168
HphI	GGTGA	2 cut(s)	3, 50
Hpy188I	TCNGA	1 cut(s)	36
Hpy188III	TCNNGA	1 cut(s)	172
HpyCH4V	TGCA	2 cut(s)	92, 137
HpyF10VI	GCNNNNNNNGC	4 cut(s)	70, 125, 134, 268
HpyF3I	CTNAG	4 cut(s)	35, 120, 200, 207
KflI	GGGWCCC	1 cut(s)	212
LpnPI	CCDG	5 cut(s)	74, 87, 141, 168, 194
Lsp1109I	GCAGC	1 cut(s)	121
LweI	GCATC	1 cut(s)	79
MaeIII	GTNAC	4 cut(s)	23, 143, 195, 248
MboII	GAAGA	1 cut(s)	237
MhlI	GDGCHC	1 cut(s)	208
MluCI	AATT	1 cut(s)	5
MmeI	TCCRAC	1 cut(s)	66
MnlI	CCTC	2 cut(s)	24, 66
MseI	TTAA	2 cut(s)	192, 280
MspCI	CTTAAG	1 cut(s)	191
MspR9I	CCNGG	1 cut(s)	156
MvaI	CCWGG	1 cut(s)	156
MwoI	GCNNNNNNNGC	4 cut(s)	70, 125, 134, 268
NlaIV	GGNNCC	3 cut(s)	186, 213, 214
NmuCI	GTSAC	3 cut(s)	23, 195, 248
PaqCI	CACCTGC	1 cut(s)	69
PfeI	GAWTC	1 cut(s)	168
PkrI	GCNGC	1 cut(s)	136
PpuMI	RGGWCCY	2 cut(s)	184, 212
Psp5II	RGGWCCY	2 cut(s)	184, 212
Psp6I	CCWGG	1 cut(s)	154
PspGI	CCWGG	1 cut(s)	154
PspN4I	GGNNCC	3 cut(s)	186, 213, 214
PspPI	GGNCC	2 cut(s)	184, 212
PspPPI	RGGWCCY	2 cut(s)	184, 212
SaqAI	TTAA	2 cut(s)	192, 280
SatI	GCNGC	1 cut(s)	135
Sau96I	GGNCC	2 cut(s)	184, 212
ScrFI	CCNGG	1 cut(s)	156
SduI	GDGCHC	1 cut(s)	208
SetI	ASST	5 cut(s)	16, 33, 63, 121, 126
SfaNI	GCATC	1 cut(s)	79
SinI	GGWCC	2 cut(s)	184, 212
SmlI	CTYRAG	1 cut(s)	191
SmoI	CTYRAG	1 cut(s)	191
Sse9I	AATT	1 cut(s)	5
StyD4I	CCNGG	1 cut(s)	154
TasI	AATT	1 cut(s)	5
TfiI	GAWTC	1 cut(s)	168
Tru1I	TTAA	2 cut(s)	192, 280
Tru9I	TTAA	2 cut(s)	192, 280
TscAI	CASTG	2 cut(s)	208, 253
TseFI	GTSAC	3 cut(s)	23, 195, 248
TseI	GCWGC	1 cut(s)	134
Tsp45I	GTSAC	3 cut(s)	23, 195, 248
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	2 cut(s)	208, 253
Vha464I	CTTAAG	1 cut(s)	191
VpaK11BI	GGWCC	2 cut(s)	184, 212
XapI	RAATTY	1 cut(s)	5

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.