Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0000528

Physical Location & Seq

Genomic Coordinates Forward (+)

27526681 .. 27531395

Gene Structure 4715 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG126100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGTATCATTCATTGATTAACTACAGAAACAAAGGTGAGATACAAAACAATGAGACAGAAATGATCATATCATCATCCTCATGTGGACGGACTACTTGGGTCAAATGGTGGCGGCAAGCAGAGAAGATTGAGGTGCAATCGTTAGAAGAGCTTCCAAAGCAGCTATTCCTGGAAATATATGAGCTTTCTCAAGCAAAGGATGTCTACACAAAATGCATATCGTCCGTGATCTCTGGGGTTGTTCAAGGTCTCAATGCAACTGTGTTTGCGTATGGTTCTACCGGAAGTGGTAAAACATATACAATGGTGGGGACACAAAATGATCTCGGGCTCATGGTTCTTAGTTTGCATACAATATTTGATCTGATAAAAAGGACAAGAGCTCTGATGAATTTGAAGTTACCTGCTCCTATCTTGAAGTCTATAACGAAGTGGGTCATGCAATGTGTTATGAAAATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000070 GO:0000226 GO:0000278 GO:0000280 GO:0000819 GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005871 GO:0005875 GO:0005929 GO:0006928 GO:0006996 GO:0007010 GO:0007017 GO:0007018 GO:0007019 GO:0007049 GO:0007059 GO:0008150 GO:0008574 GO:0009987 GO:0010938 GO:0015630 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022402 GO:0022411 GO:0030030 GO:0031109 GO:0031122 GO:0032984 GO:0032991 GO:0042623 GO:0042995 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043624 GO:0043933 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0044782 GO:0048285 GO:0051261 GO:0051276 GO:0060404 GO:0061523 GO:0070462 GO:0071840 GO:0097435 GO:0098813 GO:0120025 GO:0120036 GO:0140014 GO:1903008 GO:1903047 GO:1990939

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kinesin

Protein Analysis

153

Amino Acids

17.37

Weight (kDa)

9.15

Isoelectric Point (pI)

31.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Kinesin	PF00225	62 - 128	1.5e-20	Kinesin motor domain
Microtub_bd	PF16796	69 - 127	1.1e-09	Microtubule binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000528)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49650
fragaria_vesca	FvH4_1g18770 FvH4_1g18770 FvH4_7g34230
malus_domestica	MD01G1046900.v1.1 MD15G1305400.v1.1 MD16G1282300.v1.1
prunus_persica	Prupe.6G211700_v2.0.a1 Prupe.6G211700_v2.0.a1
pyrus_communis	pycom01g07280 pycom15g26860 pycom16g25190 pycom16g25200
rosa_chinensis	RchiOBHm_Chr1g0351151 RchiOBHm_Chr2g0109641 RchiOBHm_Chr4g0386971 RchiOBHm_Chr4g0413031 RchiOBHm_Chr4g0429541
rosa_laevigata	RLG00000007037 RLG00000009264 RLG00000009427 RLG00000015442 RLG00000017752 RLG00000017990 RLG00000022570 RLG00000028427
rosa_multiflora	Rmu_sc0000031.1_g000013 Rmu_sc0000332.1_g000058 Rmu_sc0000346.1_g000014 Rmu_sc0000698.1_g000147 Rmu_sc0001152.1_g000047 Rmu_sc0001494.1_g000003 Rmu_sc0002254.1_g000001 Rmu_sc0002531.1_g000001 Rmu_sc0002717.1_g000016 Rmu_sc0002717.1_g000017 Rmu_sc0003220.1_g000024 Rmu_sc0005016.1_g000007 Rmu_sc0005608.1_g000020 Rmu_sc0010686.1_g000003 Rmu_sc0011012.1_g000011 Rmu_sc0021503.1_g000001
rosa_roxburghii	Rroxscaffold_2G00082300 Rroxscaffold_2G00099190 Rroxscaffold_2G00129660 Rroxscaffold_2G00134070 Rroxscaffold_3G00236170 Rroxscaffold_5G00346460 Rroxscaffold_7G00156600 Rroxscaffold_7G00205430
rosa_rugosa	Rorug01G0267800 Rorug02G0020700 Rorug02G0020700 Rorug02G0161500 Rorug02G0384900 Rorug05G0567000
rosa_samantha	Rh1AG062400 Rh1AG132200 Rh1AG231500 Rh1CG126100 Rh1CG184600 Rh1CG215600 Rh1CG237400 Rh2AG213700 Rh2BG068400 Rh2BG224100 Rh2BG239600 Rh2CG069600 Rh2CG216000 Rh2CG585300 Rh2DG067600 Rh2DG219200 Rh4AG177200 Rh5AG509600 Rh5BG290500 Rh5BG328900 Rh5DG300300 Rh5DG340100 Rh6BG103200 Rh7DG421500
rosa_wichuraiana	Rw1G006030 Rw1G006580 Rw2G006320 Rw5G004390 Rw5G029130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	412
AccI	GTMKAC	1 cut(s)	204
AciI	CCGC	1 cut(s)	112
AcsI	RAATTY	2 cut(s)	391, 456
AgsI	TTSAA	3 cut(s)	245, 397, 418
AjnI	CCWGG	1 cut(s)	168
AluBI	AGCT	4 cut(s)	151, 163, 184, 383
AluI	AGCT	4 cut(s)	151, 163, 184, 383
Alw21I	GWGCWC	1 cut(s)	385
Alw26I	GTCTC	2 cut(s)	47, 254
Ama87I	CYCGRG	1 cut(s)	326
ApeKI	GCWGC	1 cut(s)	160
ApoI	RAATTY	2 cut(s)	391, 456
Asp700I	GAANNNNTTC	1 cut(s)	150
AsuHPI	GGTGA	1 cut(s)	47
AvaI	CYCGRG	1 cut(s)	326
BanII	GRGCYC	2 cut(s)	333, 385
Bbv12I	GWGCWC	1 cut(s)	385
BbvI	GCAGC	1 cut(s)	172
BciT130I	CCWGG	1 cut(s)	170
BclI	TGATCA	1 cut(s)	63
BcoDI	GTCTC	2 cut(s)	47, 254
BfmI	CTRYAG	1 cut(s)	22
BfuAI	ACCTGC	1 cut(s)	412
BisI	GCNGC	2 cut(s)	113, 161
BlsI	GCNGC	2 cut(s)	114, 162
Bme1390I	CCNGG	1 cut(s)	170
BmeT110I	CYCGRG	1 cut(s)	326
BmrFI	CCNGG	1 cut(s)	170
BpuEI	CTTGAG	1 cut(s)	174
BsaI	GGTCTC	1 cut(s)	254
BsaWI	WCCGGW	1 cut(s)	281
Bse3DI	GCAATG	1 cut(s)	449
BseBI	CCWGG	1 cut(s)	170
BseGI	GGATG	2 cut(s)	74, 205
BseMI	GCAATG	1 cut(s)	449
BseXI	GCAGC	1 cut(s)	172
BsiHKAI	GWGCWC	1 cut(s)	385
BsiHKCI	CYCGRG	1 cut(s)	326
BsiSI	CCGG	1 cut(s)	282
BslFI	GGGAC	1 cut(s)	325
BsmAI	GTCTC	2 cut(s)	47, 254
BsmFI	GGGAC	1 cut(s)	325
Bso31I	GGTCTC	1 cut(s)	254
BsoBI	CYCGRG	1 cut(s)	326
Bsp1286I	GDGCHC	2 cut(s)	333, 385
Bsp143I	GATC	4 cut(s)	63, 228, 322, 361
BspACI	CCGC	1 cut(s)	112
BspMI	ACCTGC	1 cut(s)	412
BspQI	GCTCTTC	1 cut(s)	141
BspTNI	GGTCTC	1 cut(s)	254
BsrDI	GCAATG	1 cut(s)	449
BssMI	GATC	4 cut(s)	63, 228, 322, 361
Bst2UI	CCWGG	1 cut(s)	170
Bst4CI	ACNGT	1 cut(s)	262
Bst6I	CTCTTC	1 cut(s)	141
BstC8I	GCNNGC	1 cut(s)	117
BstDEI	CTNAG	1 cut(s)	341
BstF5I	GGATG	2 cut(s)	74, 205
BstKTI	GATC	4 cut(s)	66, 231, 325, 364
BstMAI	GTCTC	2 cut(s)	47, 254
BstMBI	GATC	4 cut(s)	63, 228, 322, 361
BstMWI	GCNNNNNNNGC	1 cut(s)	157
BstNI	CCWGG	1 cut(s)	170
BstSCI	CCNGG	1 cut(s)	168
BstSFI	CTRYAG	1 cut(s)	22
BstV1I	GCAGC	1 cut(s)	172
BtsCI	GGATG	2 cut(s)	74, 205
BveI	ACCTGC	1 cut(s)	412
Cac8I	GCNNGC	1 cut(s)	117
CviAII	CATG	3 cut(s)	81, 334, 439
CviJI	RGCY	5 cut(s)	151, 163, 184, 331, 383
CviKI_1	RGCY	5 cut(s)	151, 163, 184, 331, 383
DdeI	CTNAG	1 cut(s)	341
DpnI	GATC	4 cut(s)	65, 230, 324, 363
DpnII	GATC	4 cut(s)	63, 228, 322, 361
Eam1104I	CTCTTC	1 cut(s)	141
EarI	CTCTTC	1 cut(s)	141
Ecl136II	GAGCTC	1 cut(s)	383
Eco24I	GRGCYC	2 cut(s)	333, 385
Eco31I	GGTCTC	1 cut(s)	254
Eco53kI	GAGCTC	1 cut(s)	383
Eco88I	CYCGRG	1 cut(s)	326
EcoICRI	GAGCTC	1 cut(s)	383
EcoRII	CCWGG	1 cut(s)	168
EcoT22I	ATGCAT	1 cut(s)	218
EcoT38I	GRGCYC	2 cut(s)	333, 385
FaeI	CATG	3 cut(s)	84, 337, 442
FaqI	GGGAC	1 cut(s)	325
FatI	CATG	3 cut(s)	80, 333, 438
FbaI	TGATCA	1 cut(s)	63
FblI	GTMKAC	1 cut(s)	204
Fnu4HI	GCNGC	2 cut(s)	113, 161
FokI	GGATG	2 cut(s)	61, 212
FriOI	GRGCYC	2 cut(s)	333, 385
Fsp4HI	GCNGC	2 cut(s)	113, 161
GluI	GCNGC	2 cut(s)	113, 161
HapII	CCGG	1 cut(s)	282
Hin1II	CATG	3 cut(s)	84, 337, 442
HpaII	CCGG	1 cut(s)	282
HphI	GGTGA	1 cut(s)	47
Hpy166II	GTNNAC	2 cut(s)	86, 205
Hpy188I	TCNGA	2 cut(s)	366, 387
Hpy188III	TCNNGA	1 cut(s)	415
Hpy8I	GTNNAC	2 cut(s)	86, 205
HpyCH4III	ACNGT	1 cut(s)	262
HpyCH4V	TGCA	5 cut(s)	136, 216, 257, 349, 442
HpyF10VI	GCNNNNNNNGC	1 cut(s)	157
HpyF3I	CTNAG	1 cut(s)	341
Hsp92II	CATG	3 cut(s)	84, 337, 442
Ksp22I	TGATCA	1 cut(s)	63
Kzo9I	GATC	4 cut(s)	63, 228, 322, 361
LguI	GCTCTTC	1 cut(s)	141
LmnI	GCTCC	1 cut(s)	412
LpnPI	CCDG	5 cut(s)	155, 182, 219, 295, 417
Lsp1109I	GCAGC	1 cut(s)	172
MaeIII	GTNAC	1 cut(s)	399
MalI	GATC	4 cut(s)	65, 230, 324, 363
MboI	GATC	4 cut(s)	63, 228, 322, 361
MboII	GAAGA	2 cut(s)	136, 158
MhlI	GDGCHC	2 cut(s)	333, 385
MluCI	AATT	2 cut(s)	391, 456
MnlI	CCTC	2 cut(s)	88, 124
Mph1103I	ATGCAT	1 cut(s)	218
MroXI	GAANNNNTTC	1 cut(s)	150
MseI	TTAA	2 cut(s)	18, 460
MslI	CAYNNNNRTG	1 cut(s)	79
MspI	CCGG	1 cut(s)	282
MspR9I	CCNGG	1 cut(s)	170
MvaI	CCWGG	1 cut(s)	170
MwoI	GCNNNNNNNGC	1 cut(s)	157
NdeII	GATC	4 cut(s)	63, 228, 322, 361
NlaIII	CATG	3 cut(s)	84, 337, 442
NsiI	ATGCAT	1 cut(s)	218
PciSI	GCTCTTC	1 cut(s)	141
PdmI	GAANNNNTTC	1 cut(s)	150
PfoI	TCCNGGA	1 cut(s)	168
PkrI	GCNGC	2 cut(s)	114, 162
Psp124BI	GAGCTC	1 cut(s)	385
Psp6I	CCWGG	1 cut(s)	168
PspGI	CCWGG	1 cut(s)	168
RseI	CAYNNNNRTG	1 cut(s)	79
SacI	GAGCTC	1 cut(s)	385
SapI	GCTCTTC	1 cut(s)	141
SaqAI	TTAA	2 cut(s)	18, 460
SatI	GCNGC	2 cut(s)	113, 161
Sau3AI	GATC	4 cut(s)	63, 228, 322, 361
ScrFI	CCNGG	1 cut(s)	170
SduI	GDGCHC	2 cut(s)	333, 385
SetI	ASST	8 cut(s)	37, 135, 153, 165, 186, 250, 385, 406
SfcI	CTRYAG	1 cut(s)	22
SmiMI	CAYNNNNRTG	1 cut(s)	79
SmlI	CTYRAG	1 cut(s)	189
SmoI	CTYRAG	1 cut(s)	189
Sse9I	AATT	2 cut(s)	391, 456
SsiI	CCGC	1 cut(s)	112
SspI	AATATT	1 cut(s)	357
SstI	GAGCTC	1 cut(s)	385
StyD4I	CCNGG	1 cut(s)	168
TaaI	ACNGT	1 cut(s)	262
TasI	AATT	2 cut(s)	391, 456
TauI	GCSGC	1 cut(s)	115
Tru1I	TTAA	2 cut(s)	18, 460
Tru9I	TTAA	2 cut(s)	18, 460
TseI	GCWGC	1 cut(s)	160
TspDTI	ATGAA	1 cut(s)	404
TspGWI	ACGGA	2 cut(s)	103, 214
XapI	RAATTY	2 cut(s)	391, 456
XmiI	GTMKAC	1 cut(s)	204
XmnI	GAANNNNTTC	1 cut(s)	150
Zsp2I	ATGCAT	1 cut(s)	218

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.