Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000698.1

Orthogroup ID

OG0000528

Physical Location & Seq

Genomic Coordinates Forward (+)

597794 .. 599579

Gene Structure 1786 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000698.1_g000147.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 969 bp

atggtttcggactctcattaccggcttccagccatagaattctcaaccagttcagctaaattggaccgtggaactgaaaagtggttcaatttgtgcaagagggttagagaggcttgtgaaaattatggcttttttgaaatagtatatgataagatacctctggggttaagagaagagttcttctctgcgacaaggcatcttttcggtcttccacttgagacaaagaagaaaaatgtcaatccaaagccttaccatggttattacgggcagtttccccatgctcccttgtatgagagcattggtgttgaagatgcctccaacaatgaatcccatacaagcttcacacaaataatgtggcctgatggtcatgaccagttctgtaacactgtgattgccatggtgaagaagctggatgagcttaaggaaatgattgaaatgatgattgctggagattctcttatgctcgacctccattctcccaaacgcgagctcctcacaaactcgaggttctcctcctcagtcgaagtcgccgccattgttaccgtcctcggcttattcgtcatcgacttggtccaccgttcaaaacagcggcgttcagtcttagtgcttcgaatcgaagctcggcgactggaagagagcggagacgattcggtgctagtggcttcagagaacgactgggaggtcactgcagggtttgtaggattcgattacgactccattgttggacagtgctgcgagtcgcccgtcggagacgaagtaatctttataggtatgattatttttgtgggctattgttttcattgggcgaaattattgtatataagacttcgacattgttgggagccgaatcgccttgtcgtcgatgaggccatcaacgatgacaactctgtcgtcccgctccaccctgagaccatggagaagctccagctctttaggggcgacacaatcctcatcaaggtgcgattttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009314 GO:0009416 GO:0009628 GO:0009653 GO:0009685 GO:0009686 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009791 GO:0009826 GO:0009908 GO:0009987 GO:0010033 GO:0010476 GO:0010817 GO:0016043 GO:0016049 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016491 GO:0016705 GO:0016706 GO:0019752 GO:0022414 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0032989 GO:0033993 GO:0040007 GO:0042221 GO:0042445 GO:0042446 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0045544 GO:0046394 GO:0048367 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051213 GO:0051716 GO:0055114 GO:0060560 GO:0061458 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:0071840 GO:0090567 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

322

Amino Acids

36.94

Weight (kDa)

5.42

Isoelectric Point (pI)

41.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000528)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49650
fragaria_vesca	FvH4_1g18770 FvH4_1g18770 FvH4_7g34230
malus_domestica	MD01G1046900.v1.1 MD15G1305400.v1.1 MD16G1282300.v1.1
prunus_persica	Prupe.6G211700_v2.0.a1 Prupe.6G211700_v2.0.a1
pyrus_communis	pycom01g07280 pycom15g26860 pycom16g25190 pycom16g25200
rosa_chinensis	RchiOBHm_Chr1g0351151 RchiOBHm_Chr2g0109641 RchiOBHm_Chr4g0386971 RchiOBHm_Chr4g0413031 RchiOBHm_Chr4g0429541
rosa_laevigata	RLG00000007037 RLG00000009264 RLG00000009427 RLG00000015442 RLG00000017752 RLG00000017990 RLG00000022570 RLG00000028427
rosa_multiflora	Rmu_sc0000031.1_g000013 Rmu_sc0000332.1_g000058 Rmu_sc0000346.1_g000014 Rmu_sc0000698.1_g000147 Rmu_sc0001152.1_g000047 Rmu_sc0001494.1_g000003 Rmu_sc0002254.1_g000001 Rmu_sc0002531.1_g000001 Rmu_sc0002717.1_g000016 Rmu_sc0002717.1_g000017 Rmu_sc0003220.1_g000024 Rmu_sc0005016.1_g000007 Rmu_sc0005608.1_g000020 Rmu_sc0010686.1_g000003 Rmu_sc0011012.1_g000011 Rmu_sc0021503.1_g000001
rosa_roxburghii	Rroxscaffold_2G00082300 Rroxscaffold_2G00099190 Rroxscaffold_2G00129660 Rroxscaffold_2G00134070 Rroxscaffold_3G00236170 Rroxscaffold_5G00346460 Rroxscaffold_7G00156600 Rroxscaffold_7G00205430
rosa_rugosa	Rorug01G0267800 Rorug02G0020700 Rorug02G0020700 Rorug02G0161500 Rorug02G0384900 Rorug05G0567000
rosa_samantha	Rh1AG062400 Rh1AG132200 Rh1AG231500 Rh1CG126100 Rh1CG184600 Rh1CG215600 Rh1CG237400 Rh2AG213700 Rh2BG068400 Rh2BG224100 Rh2BG239600 Rh2CG069600 Rh2CG216000 Rh2CG585300 Rh2DG067600 Rh2DG219200 Rh4AG177200 Rh5AG509600 Rh5BG290500 Rh5BG328900 Rh5DG300300 Rh5DG340100 Rh6BG103200 Rh7DG421500
rosa_wichuraiana	Rw1G006030 Rw1G006580 Rw2G006320 Rw5G004390 Rw5G029130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	680, 887
AccBSI	CCGCTC	2 cut(s)	639, 898
AccII	CGCG	1 cut(s)	486
AciI	CCGC	4 cut(s)	531, 589, 639, 896
AcsI	RAATTY	1 cut(s)	38
AcuI	CTGAAG	1 cut(s)	648
AfiI	CCNNNNNNNGG	2 cut(s)	254, 955
AflII	CTTAAG	1 cut(s)	419
AgsI	TTSAA	5 cut(s)	88, 137, 308, 434, 582
AluBI	AGCT	8 cut(s)	56, 339, 409, 418, 490, 620, 922, 928
AluI	AGCT	8 cut(s)	56, 339, 409, 418, 490, 620, 922, 928
Alw21I	GWGCWC	1 cut(s)	492
Alw26I	GTCTC	4 cut(s)	212, 636, 744, 902
Ama87I	CYCGRG	1 cut(s)	502
AoxI	GGCC	2 cut(s)	356, 867
ApeKI	GCWGC	1 cut(s)	732
ApoI	RAATTY	1 cut(s)	38
AspS9I	GGNCC	2 cut(s)	64, 571
AsuHPI	GGTGA	1 cut(s)	412
AsuII	TTCGAA	1 cut(s)	610
AvaI	CYCGRG	1 cut(s)	502
AvaII	GGWCC	2 cut(s)	64, 571
BanII	GRGCYC	1 cut(s)	492
BbsI	GAAGAC	1 cut(s)	200
Bbv12I	GWGCWC	1 cut(s)	492
BbvI	GCAGC	1 cut(s)	719
BccI	CCATC	2 cut(s)	356, 878
BcoDI	GTCTC	4 cut(s)	212, 636, 744, 902
BfaI	CTAG	1 cut(s)	656
BfmI	CTRYAG	1 cut(s)	687
BfrI	CTTAAG	1 cut(s)	419
BisI	GCNGC	3 cut(s)	531, 590, 733
BlsI	GCNGC	3 cut(s)	532, 591, 734
Bme18I	GGWCC	2 cut(s)	64, 571
BmeT110I	CYCGRG	1 cut(s)	502
BmgT120I	GGNCC	2 cut(s)	64, 571
BmiI	GGNNCC	1 cut(s)	843
BmrI	ACTGGG	1 cut(s)	685
BmsI	GCATC	2 cut(s)	205, 301
BmuI	ACTGGG	1 cut(s)	685
BpiI	GAAGAC	1 cut(s)	200
BplI	GAGNNNNNCTC	2 cut(s)	167, 199
BpmI	CTGGAG	2 cut(s)	468, 908
Bpu14I	TTCGAA	1 cut(s)	610
BpuEI	CTTGAG	1 cut(s)	236
BsaI	GGTCTC	1 cut(s)	902
BsaJI	CCNNGG	5 cut(s)	67, 253, 396, 547, 912
BsaXI	ACNNNNNCTCC	4 cut(s)	474, 504, 741, 771
Bsc4I	CCNNNNNNNGG	2 cut(s)	254, 955
Bse118I	RCCGGY	1 cut(s)	21
Bse1I	ACTGG	4 cut(s)	48, 373, 633, 680
BseDI	CCNNGG	5 cut(s)	67, 253, 396, 547, 912
BseGI	GGATG	1 cut(s)	418
BseLI	CCNNNNNNNGG	2 cut(s)	254, 955
BseMII	CTCAG	2 cut(s)	531, 897
BseNI	ACTGG	4 cut(s)	48, 373, 633, 680
BseRI	GAGGAG	3 cut(s)	482, 502, 505
BseXI	GCAGC	1 cut(s)	719
Bsh1236I	CGCG	1 cut(s)	486
BshFI	GGCC	2 cut(s)	358, 869
BsiHKAI	GWGCWC	1 cut(s)	492
BsiHKCI	CYCGRG	1 cut(s)	502
BsiSI	CCGG	1 cut(s)	22
BslFI	GGGAC	1 cut(s)	878
BslI	CCNNNNNNNGG	2 cut(s)	254, 955
BsmAI	GTCTC	4 cut(s)	212, 636, 744, 902
BsmBI	CGTCTC	2 cut(s)	636, 744
BsmFI	GGGAC	1 cut(s)	878
BsnI	GGCC	2 cut(s)	358, 869
Bso31I	GGTCTC	1 cut(s)	902
BsoBI	CYCGRG	1 cut(s)	502
Bsp119I	TTCGAA	1 cut(s)	610
Bsp1286I	GDGCHC	1 cut(s)	492
Bsp19I	CCATGG	3 cut(s)	253, 396, 912
BspACI	CCGC	4 cut(s)	531, 589, 639, 896
BspANI	GGCC	2 cut(s)	358, 869
BspCNI	CTCAG	2 cut(s)	530, 898
BspFNI	CGCG	1 cut(s)	486
BspHI	TCATGA	1 cut(s)	367
BspLI	GGNNCC	1 cut(s)	843
BspMAI	CTGCAG	1 cut(s)	691
BspT104I	TTCGAA	1 cut(s)	610
BspTI	CTTAAG	1 cut(s)	419
BspTNI	GGTCTC	1 cut(s)	902
BsrBI	CCGCTC	2 cut(s)	639, 898
BsrFI	RCCGGY	1 cut(s)	21
BsrI	ACTGG	4 cut(s)	48, 373, 633, 680
BssAI	RCCGGY	1 cut(s)	21
BssECI	CCNNGG	5 cut(s)	67, 253, 396, 547, 912
BssT1I	CCWWGG	3 cut(s)	253, 396, 912
Bst4CI	ACNGT	5 cut(s)	68, 388, 544, 578, 729
Bst6I	CTCTTC	2 cut(s)	168, 627
BstAFI	CTTAAG	1 cut(s)	419
BstBI	TTCGAA	1 cut(s)	610
BstC8I	GCNNGC	1 cut(s)	488
BstDEI	CTNAG	3 cut(s)	517, 601, 906
BstDSI	CCRYGG	4 cut(s)	67, 253, 396, 912
BstENI	CCTNNNNNAGG	1 cut(s)	953
BstF5I	GGATG	1 cut(s)	418
BstFNI	CGCG	1 cut(s)	486
BstMAI	GTCTC	4 cut(s)	212, 636, 744, 902
BstMWI	GCNNNNNNNGC	1 cut(s)	415
BstSFI	CTRYAG	1 cut(s)	687
BstUI	CGCG	1 cut(s)	486
BstV1I	GCAGC	1 cut(s)	719
BstV2I	GAAGAC	1 cut(s)	200
BsuRI	GGCC	2 cut(s)	358, 869
BtgI	CCRYGG	4 cut(s)	67, 253, 396, 912
BtsCI	GGATG	1 cut(s)	418
BtsI	GCAGTG	1 cut(s)	684
BtsIMutI	CAGTG	3 cut(s)	384, 684, 734
Cac8I	GCNNGC	1 cut(s)	488
CciI	TCATGA	1 cut(s)	367
Cfr10I	RCCGGY	1 cut(s)	21
Cfr13I	GGNCC	2 cut(s)	64, 571
CspCI	CAANNNNNGTGG	2 cut(s)	335, 370
CviAII	CATG	5 cut(s)	254, 278, 368, 397, 913
DdeI	CTNAG	3 cut(s)	517, 601, 906
DrdI	GACNNNNNNGTC	2 cut(s)	680, 887
DseDI	GACNNNNNNGTC	2 cut(s)	680, 887
Eam1104I	CTCTTC	2 cut(s)	168, 627
EarI	CTCTTC	2 cut(s)	168, 627
Ecl136II	GAGCTC	1 cut(s)	490
Eco130I	CCWWGG	3 cut(s)	253, 396, 912
Eco24I	GRGCYC	1 cut(s)	492
Eco31I	GGTCTC	1 cut(s)	902
Eco47I	GGWCC	2 cut(s)	64, 571
Eco53kI	GAGCTC	1 cut(s)	490
Eco57I	CTGAAG	1 cut(s)	648
Eco88I	CYCGRG	1 cut(s)	502
EcoICRI	GAGCTC	1 cut(s)	490
EcoNI	CCTNNNNNAGG	1 cut(s)	953
EcoRI	GAATTC	1 cut(s)	38
EcoT14I	CCWWGG	3 cut(s)	253, 396, 912
EcoT38I	GRGCYC	1 cut(s)	492
ErhI	CCWWGG	3 cut(s)	253, 396, 912
Esp3I	CGTCTC	2 cut(s)	636, 744
FaeI	CATG	5 cut(s)	257, 281, 371, 400, 916
FaqI	GGGAC	1 cut(s)	878
FatI	CATG	5 cut(s)	253, 277, 367, 396, 912
FauI	CCCGC	1 cut(s)	903
Fnu4HI	GCNGC	3 cut(s)	531, 590, 733
FokI	GGATG	1 cut(s)	425
FriOI	GRGCYC	1 cut(s)	492
Fsp4HI	GCNGC	3 cut(s)	531, 590, 733
FspBI	CTAG	1 cut(s)	656
GluI	GCNGC	3 cut(s)	531, 590, 733
GsuI	CTGGAG	2 cut(s)	468, 908
HaeIII	GGCC	2 cut(s)	358, 869
HapII	CCGG	1 cut(s)	22
Hin1II	CATG	5 cut(s)	257, 281, 371, 400, 916
HindIII	AAGCTT	1 cut(s)	337
HinfI	GANTC	9 cut(s)	11, 326, 452, 612, 647, 702, 713, 737, 847
HpaII	CCGG	1 cut(s)	22
HphI	GGTGA	1 cut(s)	412
Hpy166II	GTNNAC	1 cut(s)	574
Hpy188I	TCNGA	3 cut(s)	10, 667, 749
Hpy188III	TCNNGA	1 cut(s)	368
Hpy8I	GTNNAC	1 cut(s)	574
Hpy99I	CGWCG	2 cut(s)	749, 863
HpyCH4III	ACNGT	5 cut(s)	68, 388, 544, 578, 729
HpyCH4V	TGCA	2 cut(s)	96, 689
HpyF10VI	GCNNNNNNNGC	1 cut(s)	415
HpyF3I	CTNAG	3 cut(s)	517, 601, 906
Hsp92II	CATG	5 cut(s)	257, 281, 371, 400, 916
LmnI	GCTCC	5 cut(s)	286, 495, 841, 903, 927
Lsp1109I	GCAGC	1 cut(s)	719
LweI	GCATC	2 cut(s)	205, 301
MaeI	CTAG	1 cut(s)	656
MaeIII	GTNAC	3 cut(s)	380, 538, 682
MbiI	CCGCTC	2 cut(s)	639, 898
MboII	GAAGA	7 cut(s)	172, 185, 200, 238, 320, 415, 644
MhlI	GDGCHC	1 cut(s)	492
MluCI	AATT	5 cut(s)	38, 59, 88, 121, 809
MlyI	GAGTC	3 cut(s)	5, 707, 746
MmeI	TCCRAC	3 cut(s)	342, 703, 727
MseI	TTAA	2 cut(s)	167, 420
MslI	CAYNNNNRTG	1 cut(s)	956
MspA1I	CMGCKG	1 cut(s)	589
MspCI	CTTAAG	1 cut(s)	419
MspI	CCGG	1 cut(s)	22
MvnI	CGCG	1 cut(s)	486
MwoI	GCNNNNNNNGC	1 cut(s)	415
NcoI	CCATGG	3 cut(s)	253, 396, 912
NlaIII	CATG	5 cut(s)	257, 281, 371, 400, 916
NlaIV	GGNNCC	1 cut(s)	843
NmeAIII	GCCGAG	2 cut(s)	528, 601
NmuCI	GTSAC	1 cut(s)	682
NspV	TTCGAA	1 cut(s)	610
PaeR7I	CTCGAG	1 cut(s)	502
PagI	TCATGA	1 cut(s)	367
PcsI	WCGNNNNNNNCGW	1 cut(s)	555
PfeI	GAWTC	6 cut(s)	326, 452, 612, 647, 702, 847
PflFI	GACNNNGTC	1 cut(s)	569
PkrI	GCNGC	3 cut(s)	532, 591, 734
PleI	GAGTC	3 cut(s)	5, 707, 745
PpsI	GAGTC	3 cut(s)	5, 707, 745
Psp124BI	GAGCTC	1 cut(s)	492
PspN4I	GGNNCC	1 cut(s)	843
PspPI	GGNCC	2 cut(s)	64, 571
PspXI	VCTCGAGB	1 cut(s)	502
PstI	CTGCAG	1 cut(s)	691
PsyI	GACNNNGTC	1 cut(s)	569
RseI	CAYNNNNRTG	1 cut(s)	956
SacI	GAGCTC	1 cut(s)	492
SaqAI	TTAA	2 cut(s)	167, 420
SatI	GCNGC	3 cut(s)	531, 590, 733
Sau96I	GGNCC	2 cut(s)	64, 571
SchI	GAGTC	3 cut(s)	5, 707, 746
SduI	GDGCHC	1 cut(s)	492
SfaNI	GCATC	2 cut(s)	205, 301
SfcI	CTRYAG	1 cut(s)	687
Sfr274I	CTCGAG	1 cut(s)	502
SfuI	TTCGAA	1 cut(s)	610
SinI	GGWCC	2 cut(s)	64, 571
SlaI	CTCGAG	1 cut(s)	502
SmiMI	CAYNNNNRTG	1 cut(s)	956
SmlI	CTYRAG	3 cut(s)	215, 419, 502
SmoI	CTYRAG	3 cut(s)	215, 419, 502
Sse9I	AATT	5 cut(s)	38, 59, 88, 121, 809
SsiI	CCGC	4 cut(s)	531, 589, 639, 896
SspMI	CTAG	1 cut(s)	656
SstI	GAGCTC	1 cut(s)	492
StyI	CCWWGG	3 cut(s)	253, 396, 912
TaaI	ACNGT	5 cut(s)	68, 388, 544, 578, 729
TaqI	TCGA	9 cut(s)	465, 503, 522, 564, 610, 615, 705, 829, 861
TaqII	GACCGA	1 cut(s)	194
TasI	AATT	5 cut(s)	38, 59, 88, 121, 809
TauI	GCSGC	2 cut(s)	533, 592
TfiI	GAWTC	6 cut(s)	326, 452, 612, 647, 702, 847
Tru1I	TTAA	2 cut(s)	167, 420
Tru9I	TTAA	2 cut(s)	167, 420
TscAI	CASTG	3 cut(s)	391, 691, 734
TseFI	GTSAC	1 cut(s)	682
TseI	GCWGC	1 cut(s)	732
Tsp45I	GTSAC	1 cut(s)	682
TspDTI	ATGAA	2 cut(s)	339, 788
TspRI	CASTG	3 cut(s)	391, 691, 734
Tth111I	GACNNNGTC	1 cut(s)	569
Vha464I	CTTAAG	1 cut(s)	419
VpaK11BI	GGWCC	2 cut(s)	64, 571
XagI	CCTNNNNNAGG	1 cut(s)	953
XapI	RAATTY	1 cut(s)	38
XhoI	CTCGAG	1 cut(s)	502
XspI	CTAG	1 cut(s)	656

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.