Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000346.1

Orthogroup ID

OG0000528

Physical Location & Seq

Genomic Coordinates Forward (+)

50318 .. 51645

Gene Structure 1328 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000346.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 258 bp

atgcttcgaaggccgctaggggttgctctagcaagggttcctcatgctcaagccgggccgtcacagcagtcaattgggcttgaagggactaagagggatttcagctctgcaattctcgagcggaagaaggcagcgaatcgccttgtcgtcaatgaggccatcaatgatgtcaactctgtcgtcgcgctccaccctgagaccatggagaagctccagctctttaggggcaacacaatcctcatcaaggtgcgattttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005737 GO:0005794 GO:0005829 GO:0005886 GO:0008150 GO:0009893 GO:0009894 GO:0009896 GO:0010035 GO:0010038 GO:0010604 GO:0012505 GO:0016020 GO:0019222 GO:0031974 GO:0031981 GO:0042176 GO:0042221 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045732 GO:0046686 GO:0048518 GO:0050789 GO:0050896 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0065007 GO:0070013 GO:0071944 GO:0080090

KEGG Pathways

Metabolic & Signaling

ko04141 ko05134 map04141 map05134

Pfam Domains

Protein Families

AAA CDC48_2 CDC48_N Vps4_C

Protein Analysis

85

Amino Acids

9.39

Weight (kDa)

10.89

Isoelectric Point (pI)

43.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000528)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49650
fragaria_vesca	FvH4_1g18770 FvH4_1g18770 FvH4_7g34230
malus_domestica	MD01G1046900.v1.1 MD15G1305400.v1.1 MD16G1282300.v1.1
prunus_persica	Prupe.6G211700_v2.0.a1 Prupe.6G211700_v2.0.a1
pyrus_communis	pycom01g07280 pycom15g26860 pycom16g25190 pycom16g25200
rosa_chinensis	RchiOBHm_Chr1g0351151 RchiOBHm_Chr2g0109641 RchiOBHm_Chr4g0386971 RchiOBHm_Chr4g0413031 RchiOBHm_Chr4g0429541
rosa_laevigata	RLG00000007037 RLG00000009264 RLG00000009427 RLG00000015442 RLG00000017752 RLG00000017990 RLG00000022570 RLG00000028427
rosa_multiflora	Rmu_sc0000031.1_g000013 Rmu_sc0000332.1_g000058 Rmu_sc0000346.1_g000014 Rmu_sc0000698.1_g000147 Rmu_sc0001152.1_g000047 Rmu_sc0001494.1_g000003 Rmu_sc0002254.1_g000001 Rmu_sc0002531.1_g000001 Rmu_sc0002717.1_g000016 Rmu_sc0002717.1_g000017 Rmu_sc0003220.1_g000024 Rmu_sc0005016.1_g000007 Rmu_sc0005608.1_g000020 Rmu_sc0010686.1_g000003 Rmu_sc0011012.1_g000011 Rmu_sc0021503.1_g000001
rosa_roxburghii	Rroxscaffold_2G00082300 Rroxscaffold_2G00099190 Rroxscaffold_2G00129660 Rroxscaffold_2G00134070 Rroxscaffold_3G00236170 Rroxscaffold_5G00346460 Rroxscaffold_7G00156600 Rroxscaffold_7G00205430
rosa_rugosa	Rorug01G0267800 Rorug02G0020700 Rorug02G0020700 Rorug02G0161500 Rorug02G0384900 Rorug05G0567000
rosa_samantha	Rh1AG062400 Rh1AG132200 Rh1AG231500 Rh1CG126100 Rh1CG184600 Rh1CG215600 Rh1CG237400 Rh2AG213700 Rh2BG068400 Rh2BG224100 Rh2BG239600 Rh2CG069600 Rh2CG216000 Rh2CG585300 Rh2DG067600 Rh2DG219200 Rh4AG177200 Rh5AG509600 Rh5BG290500 Rh5BG328900 Rh5DG300300 Rh5DG340100 Rh6BG103200 Rh7DG421500
rosa_wichuraiana	Rw1G006030 Rw1G006580 Rw2G006320 Rw5G004390 Rw5G029130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	121
AccII	CGCG	1 cut(s)	185
AciI	CCGC	2 cut(s)	14, 121
AfiI	CCNNNNNNNGG	1 cut(s)	244
AgsI	TTSAA	1 cut(s)	83
AluBI	AGCT	3 cut(s)	105, 211, 217
AluI	AGCT	3 cut(s)	105, 211, 217
Alw26I	GTCTC	1 cut(s)	191
Ama87I	CYCGRG	1 cut(s)	116
AoxI	GGCC	3 cut(s)	11, 56, 156
ApeKI	GCWGC	1 cut(s)	131
AspLEI	GCGC	1 cut(s)	187
AspS9I	GGNCC	1 cut(s)	56
AsuC2I	CCSGG	1 cut(s)	55
AsuII	TTCGAA	1 cut(s)	7
AvaI	CYCGRG	1 cut(s)	116
BbvI	GCAGC	1 cut(s)	143
BccI	CCATC	1 cut(s)	167
BceAI	ACGGC	1 cut(s)	43
BcnI	CCSGG	1 cut(s)	55
BcoDI	GTCTC	1 cut(s)	191
BfaI	CTAG	2 cut(s)	17, 29
BisI	GCNGC	2 cut(s)	14, 132
BlsI	GCNGC	2 cut(s)	15, 133
Bme1390I	CCNGG	1 cut(s)	55
BmeT110I	CYCGRG	1 cut(s)	116
BmgT120I	GGNCC	1 cut(s)	56
BmiI	GGNNCC	1 cut(s)	39
BmrFI	CCNGG	1 cut(s)	55
BpmI	CTGGAG	1 cut(s)	197
Bpu14I	TTCGAA	1 cut(s)	7
BpuEI	CTTGAG	1 cut(s)	33
BpuMI	CCSGG	1 cut(s)	55
BsaI	GGTCTC	1 cut(s)	191
BsaJI	CCNNGG	1 cut(s)	201
Bsc4I	CCNNNNNNNGG	1 cut(s)	244
BseDI	CCNNGG	1 cut(s)	201
BseLI	CCNNNNNNNGG	1 cut(s)	244
BseMII	CTCAG	1 cut(s)	186
BseXI	GCAGC	1 cut(s)	143
Bsh1236I	CGCG	1 cut(s)	185
BshFI	GGCC	3 cut(s)	13, 58, 158
BsiHKCI	CYCGRG	1 cut(s)	116
BsiSI	CCGG	1 cut(s)	54
BslFI	GGGAC	1 cut(s)	100
BslI	CCNNNNNNNGG	1 cut(s)	244
BsmAI	GTCTC	1 cut(s)	191
BsmFI	GGGAC	1 cut(s)	100
BsnI	GGCC	3 cut(s)	13, 58, 158
Bso31I	GGTCTC	1 cut(s)	191
BsoBI	CYCGRG	1 cut(s)	116
Bsp119I	TTCGAA	1 cut(s)	7
Bsp19I	CCATGG	1 cut(s)	201
BspACI	CCGC	2 cut(s)	14, 121
BspANI	GGCC	3 cut(s)	13, 58, 158
BspCNI	CTCAG	1 cut(s)	187
BspFNI	CGCG	1 cut(s)	185
BspLI	GGNNCC	1 cut(s)	39
BspT104I	TTCGAA	1 cut(s)	7
BspTNI	GGTCTC	1 cut(s)	191
BsrBI	CCGCTC	1 cut(s)	121
BssECI	CCNNGG	1 cut(s)	201
BssT1I	CCWWGG	1 cut(s)	201
BstBI	TTCGAA	1 cut(s)	7
BstDEI	CTNAG	2 cut(s)	90, 195
BstDSI	CCRYGG	1 cut(s)	201
BstENI	CCTNNNNNAGG	1 cut(s)	242
BstFNI	CGCG	1 cut(s)	185
BstHHI	GCGC	1 cut(s)	187
BstMAI	GTCTC	1 cut(s)	191
BstMWI	GCNNNNNNNGC	2 cut(s)	10, 64
BstSCI	CCNGG	1 cut(s)	53
BstUI	CGCG	1 cut(s)	185
BstV1I	GCAGC	1 cut(s)	143
BsuRI	GGCC	3 cut(s)	13, 58, 158
BtgI	CCRYGG	1 cut(s)	201
CfoI	GCGC	1 cut(s)	187
Cfr13I	GGNCC	1 cut(s)	56
CviAII	CATG	2 cut(s)	44, 202
CviJI	RGCY	8 cut(s)	13, 53, 58, 79, 105, 158, 211, 217
CviKI_1	RGCY	8 cut(s)	13, 53, 58, 79, 105, 158, 211, 217
DdeI	CTNAG	2 cut(s)	90, 195
Eco130I	CCWWGG	1 cut(s)	201
Eco31I	GGTCTC	1 cut(s)	191
Eco88I	CYCGRG	1 cut(s)	116
EcoNI	CCTNNNNNAGG	1 cut(s)	242
EcoT14I	CCWWGG	1 cut(s)	201
ErhI	CCWWGG	1 cut(s)	201
FaeI	CATG	2 cut(s)	47, 205
FaiI	YATR	2 cut(s)	45, 203
FaqI	GGGAC	1 cut(s)	100
FatI	CATG	2 cut(s)	43, 201
Fnu4HI	GCNGC	2 cut(s)	14, 132
Fsp4HI	GCNGC	2 cut(s)	14, 132
FspBI	CTAG	2 cut(s)	17, 29
GlaI	GCGC	1 cut(s)	186
GluI	GCNGC	2 cut(s)	14, 132
GsuI	CTGGAG	1 cut(s)	197
HaeIII	GGCC	3 cut(s)	13, 58, 158
HapII	CCGG	1 cut(s)	54
HhaI	GCGC	1 cut(s)	187
Hin1II	CATG	2 cut(s)	47, 205
Hin6I	GCGC	1 cut(s)	185
HinP1I	GCGC	1 cut(s)	185
HincII	GTYRAC	1 cut(s)	172
HindII	GTYRAC	1 cut(s)	172
HinfI	GANTC	1 cut(s)	136
HpaII	CCGG	1 cut(s)	54
Hpy166II	GTNNAC	1 cut(s)	172
Hpy188III	TCNNGA	1 cut(s)	116
Hpy8I	GTNNAC	1 cut(s)	172
Hpy99I	CGWCG	1 cut(s)	185
HpyAV	CCTTC	3 cut(s)	3, 77, 121
HpyCH4V	TGCA	1 cut(s)	110
HpyF10VI	GCNNNNNNNGC	2 cut(s)	10, 64
HpyF3I	CTNAG	2 cut(s)	90, 195
Hsp92II	CATG	2 cut(s)	47, 205
HspAI	GCGC	1 cut(s)	185
LmnI	GCTCC	2 cut(s)	192, 216
LpnPI	CCDG	3 cut(s)	67, 207, 227
Lsp1109I	GCAGC	1 cut(s)	143
MaeI	CTAG	2 cut(s)	17, 29
MaeIII	GTNAC	1 cut(s)	60
MbiI	CCGCTC	1 cut(s)	121
MboII	GAAGA	1 cut(s)	136
MfeI	CAATTG	1 cut(s)	72
MluCI	AATT	2 cut(s)	72, 111
MnlI	CCTC	4 cut(s)	51, 87, 148, 248
MslI	CAYNNNNRTG	1 cut(s)	245
MspI	CCGG	1 cut(s)	54
MspR9I	CCNGG	1 cut(s)	55
MunI	CAATTG	1 cut(s)	72
MvnI	CGCG	1 cut(s)	185
MwoI	GCNNNNNNNGC	2 cut(s)	10, 64
NciI	CCSGG	1 cut(s)	55
NcoI	CCATGG	1 cut(s)	201
NlaIII	CATG	2 cut(s)	47, 205
NlaIV	GGNNCC	1 cut(s)	39
NmuCI	GTSAC	1 cut(s)	60
NspV	TTCGAA	1 cut(s)	7
PaeR7I	CTCGAG	1 cut(s)	116
PfeI	GAWTC	1 cut(s)	136
PkrI	GCNGC	2 cut(s)	15, 133
PspN4I	GGNNCC	1 cut(s)	39
PspPI	GGNCC	1 cut(s)	56
RseI	CAYNNNNRTG	1 cut(s)	245
SatI	GCNGC	2 cut(s)	14, 132
Sau96I	GGNCC	1 cut(s)	56
ScrFI	CCNGG	1 cut(s)	55
SetI	ASST	4 cut(s)	107, 213, 219, 249
Sfr274I	CTCGAG	1 cut(s)	116
SfuI	TTCGAA	1 cut(s)	7
SlaI	CTCGAG	1 cut(s)	116
SmiMI	CAYNNNNRTG	1 cut(s)	245
SmlI	CTYRAG	2 cut(s)	48, 116
SmoI	CTYRAG	2 cut(s)	48, 116
Sse9I	AATT	2 cut(s)	72, 111
SsiI	CCGC	2 cut(s)	14, 121
SspMI	CTAG	2 cut(s)	17, 29
StyD4I	CCNGG	1 cut(s)	53
StyI	CCWWGG	1 cut(s)	201
TaqI	TCGA	2 cut(s)	7, 117
TasI	AATT	2 cut(s)	72, 111
TauI	GCSGC	1 cut(s)	16
TfiI	GAWTC	1 cut(s)	136
TseFI	GTSAC	1 cut(s)	60
TseI	GCWGC	1 cut(s)	131
Tsp45I	GTSAC	1 cut(s)	60
XagI	CCTNNNNNAGG	1 cut(s)	242
XhoI	CTCGAG	1 cut(s)	116
XspI	CTAG	2 cut(s)	17, 29

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.