Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0000528

Physical Location & Seq

Genomic Coordinates Forward (+)

5181047 .. 5183326

Gene Structure 2280 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG068400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGCCTCTAAGTATTGAAGGATATGTTCATCGTATTGGTCGTACTGGAAGAGCATATAGTACTGGTGCTTCTGTGTCTCTTGTTTCTCCAGATGAGATGAAAGCTTTTGAAGAGATAAAGTCCTTTTTGGGTGATGATGAAGAAAATGATTCAAATAAACTTGTTCCATTTACTTTACTGACCAAGAATGCAGTGGAGTCTTTAAGATGTAGAGCTGAGAGTGTGACAAAACTTGCCGTGAGAGAATCCCGAGCTCAGGATTTGAGGAATGAAATTCTCAATTCTGAAAAGTTGAAGGCTCATTTTGAAGCCAACCAAAAGGATCTAGATCTGTTGAAACATGACAAGGTTTTGAGCAAGAAGCCCCCTGCTCCTCACCTGCGAGTTGTGCCTGATTATCTGTTGGATGCAACAACTAAAGAAGCCAGCAAGAGAGTTAAGCTTGCGAGAGCTGCAATGGGTAACAACAACCCTGGTCGCCGTGGATTCAAGAAAGATAAGGACCCCCTTAAGTCTCTCAGTGCTCAGGGACCCAAGAAAGGAAGAAGGGAAAGAAAAGATGGCAGTGAGAACCATAAGCAAAAAAGGCAAAAGACATCCATGTGTTGTATAGACGGGGTTTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010467 GO:0010501 GO:0016070 GO:0016072 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022613 GO:0031974 GO:0031981 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0071840 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

208

Amino Acids

23.33

Weight (kDa)

9.68

Isoelectric Point (pI)

40.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000528)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49650
fragaria_vesca	FvH4_1g18770 FvH4_1g18770 FvH4_7g34230
malus_domestica	MD01G1046900.v1.1 MD15G1305400.v1.1 MD16G1282300.v1.1
prunus_persica	Prupe.6G211700_v2.0.a1 Prupe.6G211700_v2.0.a1
pyrus_communis	pycom01g07280 pycom15g26860 pycom16g25190 pycom16g25200
rosa_chinensis	RchiOBHm_Chr1g0351151 RchiOBHm_Chr2g0109641 RchiOBHm_Chr4g0386971 RchiOBHm_Chr4g0413031 RchiOBHm_Chr4g0429541
rosa_laevigata	RLG00000007037 RLG00000009264 RLG00000009427 RLG00000015442 RLG00000017752 RLG00000017990 RLG00000022570 RLG00000028427
rosa_multiflora	Rmu_sc0000031.1_g000013 Rmu_sc0000332.1_g000058 Rmu_sc0000346.1_g000014 Rmu_sc0000698.1_g000147 Rmu_sc0001152.1_g000047 Rmu_sc0001494.1_g000003 Rmu_sc0002254.1_g000001 Rmu_sc0002531.1_g000001 Rmu_sc0002717.1_g000016 Rmu_sc0002717.1_g000017 Rmu_sc0003220.1_g000024 Rmu_sc0005016.1_g000007 Rmu_sc0005608.1_g000020 Rmu_sc0010686.1_g000003 Rmu_sc0011012.1_g000011 Rmu_sc0021503.1_g000001
rosa_roxburghii	Rroxscaffold_2G00082300 Rroxscaffold_2G00099190 Rroxscaffold_2G00129660 Rroxscaffold_2G00134070 Rroxscaffold_3G00236170 Rroxscaffold_5G00346460 Rroxscaffold_7G00156600 Rroxscaffold_7G00205430
rosa_rugosa	Rorug01G0267800 Rorug02G0020700 Rorug02G0020700 Rorug02G0161500 Rorug02G0384900 Rorug05G0567000
rosa_samantha	Rh1AG062400 Rh1AG132200 Rh1AG231500 Rh1CG126100 Rh1CG184600 Rh1CG215600 Rh1CG237400 Rh2AG213700 Rh2BG068400 Rh2BG224100 Rh2BG239600 Rh2CG069600 Rh2CG216000 Rh2CG585300 Rh2DG067600 Rh2DG219200 Rh4AG177200 Rh5AG509600 Rh5BG290500 Rh5BG328900 Rh5DG300300 Rh5DG340100 Rh6BG103200 Rh7DG421500
rosa_wichuraiana	Rw1G006030 Rw1G006580 Rw2G006320 Rw5G004390 Rw5G029130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	387
Acc36I	ACCTGC	1 cut(s)	387
AclWI	GGATC	1 cut(s)	330
AcsI	RAATTY	1 cut(s)	273
AfaI	GTAC	2 cut(s)	43, 61
AfiI	CCNNNNNNNGG	2 cut(s)	256, 539
AflII	CTTAAG	1 cut(s)	509
AgsI	TTSAA	7 cut(s)	17, 110, 153, 295, 308, 337, 490
AjnI	CCWGG	1 cut(s)	472
AluBI	AGCT	5 cut(s)	104, 215, 254, 442, 452
AluI	AGCT	5 cut(s)	104, 215, 254, 442, 452
Alw21I	GWGCWC	2 cut(s)	256, 526
Alw26I	GTCTC	2 cut(s)	81, 519
AlwI	GGATC	1 cut(s)	330
Ama87I	CYCGRG	1 cut(s)	249
ApeKI	GCWGC	1 cut(s)	452
ApoI	RAATTY	1 cut(s)	273
AspS9I	GGNCC	2 cut(s)	502, 530
AsuHPI	GGTGA	2 cut(s)	143, 368
AvaI	CYCGRG	1 cut(s)	249
AvaII	GGWCC	2 cut(s)	502, 530
BanII	GRGCYC	1 cut(s)	256
BarI	GAAGNNNNNNTAC	2 cut(s)	52, 84
Bbv12I	GWGCWC	2 cut(s)	256, 526
BbvI	GCAGC	1 cut(s)	439
BccI	CCATC	1 cut(s)	554
BceAI	ACGGC	2 cut(s)	221, 465
BciT130I	CCWGG	1 cut(s)	474
BcoDI	GTCTC	2 cut(s)	81, 519
BfaI	CTAG	2 cut(s)	326, 625
BfrI	CTTAAG	1 cut(s)	509
BfuAI	ACCTGC	1 cut(s)	387
BglII	AGATCT	1 cut(s)	328
BisI	GCNGC	1 cut(s)	453
BlsI	GCNGC	1 cut(s)	454
BmcAI	AGTACT	1 cut(s)	61
Bme1390I	CCNGG	1 cut(s)	474
Bme18I	GGWCC	2 cut(s)	502, 530
BmeT110I	CYCGRG	1 cut(s)	249
BmgT120I	GGNCC	2 cut(s)	502, 530
BmiI	GGNNCC	3 cut(s)	504, 531, 532
BmrFI	CCNGG	1 cut(s)	474
BmsI	GCATC	1 cut(s)	397
BpmI	CTGGAG	1 cut(s)	72
Bpu10I	CCTNAGC	2 cut(s)	255, 525
BsaBI	GATNNNNATC	1 cut(s)	327
BsaJI	CCNNGG	2 cut(s)	472, 481
Bsc4I	CCNNNNNNNGG	2 cut(s)	256, 539
Bse1I	ACTGG	2 cut(s)	49, 67
Bse3DI	GCAATG	1 cut(s)	462
Bse8I	GATNNNNATC	1 cut(s)	327
BseBI	CCWGG	1 cut(s)	474
BseDI	CCNNGG	2 cut(s)	472, 481
BseGI	GGATG	2 cut(s)	412, 596
BseJI	GATNNNNATC	1 cut(s)	327
BseLI	CCNNNNNNNGG	2 cut(s)	256, 539
BseMI	GCAATG	1 cut(s)	462
BseMII	CTCAG	4 cut(s)	207, 269, 532, 539
BseNI	ACTGG	2 cut(s)	49, 67
BseRI	GAGGAG	1 cut(s)	363
BseXI	GCAGC	1 cut(s)	439
BsiHKAI	GWGCWC	2 cut(s)	256, 526
BsiHKCI	CYCGRG	1 cut(s)	249
BslFI	GGGAC	1 cut(s)	543
BslI	CCNNNNNNNGG	2 cut(s)	256, 539
BsmAI	GTCTC	2 cut(s)	81, 519
BsmFI	GGGAC	1 cut(s)	543
BsmI	GAATGC	1 cut(s)	193
BsoBI	CYCGRG	1 cut(s)	249
Bsp1286I	GDGCHC	2 cut(s)	256, 526
Bsp143I	GATC	2 cut(s)	322, 328
BspCNI	CTCAG	4 cut(s)	208, 268, 531, 538
BspLI	GGNNCC	3 cut(s)	504, 531, 532
BspMI	ACCTGC	1 cut(s)	387
BspPI	GGATC	1 cut(s)	330
BspQI	GCTCTTC	1 cut(s)	43
BspTI	CTTAAG	1 cut(s)	509
BsrDI	GCAATG	1 cut(s)	462
BsrI	ACTGG	2 cut(s)	49, 67
BssECI	CCNNGG	2 cut(s)	472, 481
BssMI	GATC	2 cut(s)	322, 328
Bst2UI	CCWGG	1 cut(s)	474
Bst6I	CTCTTC	2 cut(s)	43, 105
BstAFI	CTTAAG	1 cut(s)	509
BstC8I	GCNNGC	2 cut(s)	427, 444
BstDEI	CTNAG	5 cut(s)	8, 216, 255, 518, 525
BstDSI	CCRYGG	1 cut(s)	481
BstF5I	GGATG	2 cut(s)	412, 596
BstKTI	GATC	2 cut(s)	325, 331
BstMAI	GTCTC	2 cut(s)	81, 519
BstMBI	GATC	2 cut(s)	322, 328
BstMWI	GCNNNNNNNGC	3 cut(s)	388, 452, 586
BstNI	CCWGG	1 cut(s)	474
BstSCI	CCNGG	1 cut(s)	472
BstV1I	GCAGC	1 cut(s)	439
BstX2I	RGATCY	2 cut(s)	322, 328
BstYI	RGATCY	2 cut(s)	322, 328
BtgI	CCRYGG	1 cut(s)	481
BtsCI	GGATG	2 cut(s)	412, 596
BtsI	GCAGTG	2 cut(s)	198, 571
BtsIMutI	CAGTG	3 cut(s)	198, 526, 571
BveI	ACCTGC	1 cut(s)	387
Cac8I	GCNNGC	2 cut(s)	427, 444
Cfr13I	GGNCC	2 cut(s)	502, 530
Csp6I	GTAC	2 cut(s)	42, 60
CviAII	CATG	2 cut(s)	341, 601
CviJI	RGCY	9 cut(s)	104, 215, 254, 299, 311, 364, 425, 442, 452
CviKI_1	RGCY	9 cut(s)	104, 215, 254, 299, 311, 364, 425, 442, 452
CviQI	GTAC	2 cut(s)	42, 60
DdeI	CTNAG	5 cut(s)	8, 216, 255, 518, 525
DpnI	GATC	2 cut(s)	324, 330
DpnII	GATC	2 cut(s)	322, 328
Eam1104I	CTCTTC	2 cut(s)	43, 105
EarI	CTCTTC	2 cut(s)	43, 105
Ecl136II	GAGCTC	1 cut(s)	254
Eco24I	GRGCYC	1 cut(s)	256
Eco47I	GGWCC	2 cut(s)	502, 530
Eco53kI	GAGCTC	1 cut(s)	254
Eco88I	CYCGRG	1 cut(s)	249
EcoICRI	GAGCTC	1 cut(s)	254
EcoO109I	RGGNCCY	2 cut(s)	502, 530
EcoRII	CCWGG	1 cut(s)	472
EcoT38I	GRGCYC	1 cut(s)	256
FaeI	CATG	2 cut(s)	344, 604
FaiI	YATR	7 cut(s)	24, 55, 57, 342, 576, 602, 611
FaqI	GGGAC	1 cut(s)	543
FatI	CATG	2 cut(s)	340, 600
Fnu4HI	GCNGC	1 cut(s)	453
FokI	GGATG	2 cut(s)	419, 583
FriOI	GRGCYC	1 cut(s)	256
Fsp4HI	GCNGC	1 cut(s)	453
FspBI	CTAG	2 cut(s)	326, 625
GluI	GCNGC	1 cut(s)	453
GsuI	CTGGAG	1 cut(s)	72
Hin1II	CATG	2 cut(s)	344, 604
HindIII	AAGCTT	2 cut(s)	102, 440
HinfI	GANTC	4 cut(s)	149, 197, 245, 486
HphI	GGTGA	2 cut(s)	143, 368
Hpy166II	GTNNAC	1 cut(s)	622
Hpy188I	TCNGA	1 cut(s)	286
Hpy188III	TCNNGA	5 cut(s)	89, 249, 257, 326, 490
Hpy8I	GTNNAC	1 cut(s)	622
HpyAV	CCTTC	3 cut(s)	11, 289, 540
HpyCH4V	TGCA	3 cut(s)	191, 410, 455
HpyF10VI	GCNNNNNNNGC	3 cut(s)	388, 452, 586
HpyF3I	CTNAG	5 cut(s)	8, 216, 255, 518, 525
Hsp92II	CATG	2 cut(s)	344, 604
KflI	GGGWCCC	1 cut(s)	530
Kzo9I	GATC	2 cut(s)	322, 328
LguI	GCTCTTC	1 cut(s)	43
LmnI	GCTCC	1 cut(s)	376
Lsp1109I	GCAGC	1 cut(s)	439
LweI	GCATC	1 cut(s)	397
MaeI	CTAG	2 cut(s)	326, 625
MaeIII	GTNAC	2 cut(s)	223, 461
MalI	GATC	2 cut(s)	324, 330
MboI	GATC	2 cut(s)	322, 328
MboII	GAAGA	4 cut(s)	60, 122, 152, 555
MflI	RGATCY	2 cut(s)	322, 328
MhlI	GDGCHC	2 cut(s)	256, 526
MluCI	AATT	2 cut(s)	273, 280
MlyI	GAGTC	1 cut(s)	206
MmeI	TCCRAC	1 cut(s)	384
MnlI	CCTC	3 cut(s)	15, 258, 384
MseI	TTAA	3 cut(s)	203, 438, 510
MslI	CAYNNNNRTG	1 cut(s)	601
MspCI	CTTAAG	1 cut(s)	509
MspR9I	CCNGG	1 cut(s)	474
Mva1269I	GAATGC	1 cut(s)	193
MvaI	CCWGG	1 cut(s)	474
MwoI	GCNNNNNNNGC	3 cut(s)	388, 452, 586
NdeII	GATC	2 cut(s)	322, 328
NlaIII	CATG	2 cut(s)	344, 604
NlaIV	GGNNCC	3 cut(s)	504, 531, 532
NmuCI	GTSAC	1 cut(s)	223
PaqCI	CACCTGC	1 cut(s)	387
PciSI	GCTCTTC	1 cut(s)	43
PcsI	WCGNNNNNNNCGW	1 cut(s)	37
PctI	GAATGC	1 cut(s)	193
PfeI	GAWTC	3 cut(s)	149, 245, 486
PkrI	GCNGC	1 cut(s)	454
PleI	GAGTC	1 cut(s)	205
PpsI	GAGTC	1 cut(s)	205
PpuMI	RGGWCCY	2 cut(s)	502, 530
Psp124BI	GAGCTC	1 cut(s)	256
Psp5II	RGGWCCY	2 cut(s)	502, 530
Psp6I	CCWGG	1 cut(s)	472
PspGI	CCWGG	1 cut(s)	472
PspN4I	GGNNCC	3 cut(s)	504, 531, 532
PspPI	GGNCC	2 cut(s)	502, 530
PspPPI	RGGWCCY	2 cut(s)	502, 530
PsuI	RGATCY	2 cut(s)	322, 328
RsaI	GTAC	2 cut(s)	43, 61
RsaNI	GTAC	2 cut(s)	42, 60
RseI	CAYNNNNRTG	1 cut(s)	601
SacI	GAGCTC	1 cut(s)	256
SapI	GCTCTTC	1 cut(s)	43
SaqAI	TTAA	3 cut(s)	203, 438, 510
SatI	GCNGC	1 cut(s)	453
Sau3AI	GATC	2 cut(s)	322, 328
Sau96I	GGNCC	2 cut(s)	502, 530
ScaI	AGTACT	1 cut(s)	61
SchI	GAGTC	1 cut(s)	206
ScrFI	CCNGG	1 cut(s)	474
SduI	GDGCHC	2 cut(s)	256, 526
SetI	ASST	7 cut(s)	106, 217, 256, 351, 381, 444, 454
SfaNI	GCATC	1 cut(s)	397
SinI	GGWCC	2 cut(s)	502, 530
SmiMI	CAYNNNNRTG	1 cut(s)	601
SmlI	CTYRAG	1 cut(s)	509
SmoI	CTYRAG	1 cut(s)	509
Sse9I	AATT	2 cut(s)	273, 280
SspMI	CTAG	2 cut(s)	326, 625
SstI	GAGCTC	1 cut(s)	256
StyD4I	CCNGG	1 cut(s)	472
TasI	AATT	2 cut(s)	273, 280
TatI	WGTACW	1 cut(s)	59
TfiI	GAWTC	3 cut(s)	149, 245, 486
Tru1I	TTAA	3 cut(s)	203, 438, 510
Tru9I	TTAA	3 cut(s)	203, 438, 510
TscAI	CASTG	3 cut(s)	198, 526, 571
TseFI	GTSAC	1 cut(s)	223
TseI	GCWGC	1 cut(s)	452
Tsp45I	GTSAC	1 cut(s)	223
TspDTI	ATGAA	4 cut(s)	17, 113, 153, 285
TspRI	CASTG	3 cut(s)	198, 526, 571
Vha464I	CTTAAG	1 cut(s)	509
VpaK11BI	GGWCC	2 cut(s)	502, 530
XapI	RAATTY	1 cut(s)	273
XbaI	TCTAGA	1 cut(s)	325
XcmI	CCANNNNNNNNNTGG	1 cut(s)	190
XspI	CTAG	2 cut(s)	326, 625
ZrmI	AGTACT	1 cut(s)	61

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.