Rw5G004390
ERF Family

Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
Physical Location & Seq
Reverse (-)
4590708 .. 4592867
2160 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G004390.1

Sequence Viewer

Length: 708 bp
ATGGGTAACAACAACCCTGGTCGCCGTGGATTCAAGAAAGATAAGGACCCCCTTAAGTCACTCAGTGCTCAGGGACCCAAGAAAGGAAGACGGGAAAGAAAAGATGGCAGTGACAACCATAAGCAAAAAAGAAACAAAGGTGAGATACAAAACAATGAGACAGAAATGATCATATCATCATCCTCATGTGGACGGACTACTTGGGTCAAATGGTGGGGGCAAGCAGAGAAGATTGAGGTGCAATCGTTAGAAGAGCTTCCAAAGCAGCTATTCCTAGAAATATATGAGCTTTCTCAAGCAAAGGATGTCTACACAAAATGCATATCGTCCGTGATCTCTGGGGTTGTTCATGGTCTCAATGCAACTGTGTTTGCGTATGGTTCTACCGGAAGTGGTAAAACATATACAATGGTGGGGACACAAAATGATCCCGGGCTCATGGTTCTTAGTTTGCATACAATATTTGATCTGATAAAAAGGACAAGAGCTCTGATGAATTTGAAGTTACCTGCTCCTATCTTGAAGTCTATAACGAAGTTATCTATGATTTGCTTGAAAAGTCATCCGGCCATTTGGAACTCAGAGAGGATCCAGAGCAAGGAATCATTGTTGCTGGCCTCAACTTGGCCACTTAGTTGCATCCCATTTAACTTTCCACTAGTGTTGTCAATCTGCCATTCTGCCTTGTATATCAAATGTTTTTCTTAA

Protein Analysis

235

Amino Acids

26.29

Weight (kDa)

9.61

Isoelectric Point (pI)

36.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Kinesin PF00225 97 - 163 1.4e-20 Kinesin motor domain
Microtub_bd PF16796 106 - 162 1.8e-09 Microtubule binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000528)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G49650
fragaria_vesca FvH4_1g18770 FvH4_1g18770 FvH4_7g34230
malus_domestica MD01G1046900.v1.1 MD15G1305400.v1.1 MD16G1282300.v1.1
prunus_persica Prupe.6G211700_v2.0.a1 Prupe.6G211700_v2.0.a1
pyrus_communis pycom01g07280 pycom15g26860 pycom16g25190 pycom16g25200
rosa_chinensis RchiOBHm_Chr1g0351151 RchiOBHm_Chr2g0109641 RchiOBHm_Chr4g0386971 RchiOBHm_Chr4g0413031 RchiOBHm_Chr4g0429541
rosa_laevigata RLG00000007037 RLG00000009264 RLG00000009427 RLG00000015442 RLG00000017752 RLG00000017990 RLG00000022570 RLG00000028427
rosa_multiflora Rmu_sc0000031.1_g000013 Rmu_sc0000332.1_g000058 Rmu_sc0000346.1_g000014 Rmu_sc0000698.1_g000147 Rmu_sc0001152.1_g000047 Rmu_sc0001494.1_g000003 Rmu_sc0002254.1_g000001 Rmu_sc0002531.1_g000001 Rmu_sc0002717.1_g000016 Rmu_sc0002717.1_g000017 Rmu_sc0003220.1_g000024 Rmu_sc0005016.1_g000007 Rmu_sc0005608.1_g000020 Rmu_sc0010686.1_g000003 Rmu_sc0011012.1_g000011 Rmu_sc0021503.1_g000001
rosa_roxburghii Rroxscaffold_2G00082300 Rroxscaffold_2G00099190 Rroxscaffold_2G00129660 Rroxscaffold_2G00134070 Rroxscaffold_3G00236170 Rroxscaffold_5G00346460 Rroxscaffold_7G00156600 Rroxscaffold_7G00205430
rosa_rugosa Rorug01G0267800 Rorug02G0020700 Rorug02G0020700 Rorug02G0161500 Rorug02G0384900 Rorug05G0567000
rosa_samantha Rh1AG062400 Rh1AG132200 Rh1AG231500 Rh1CG126100 Rh1CG184600 Rh1CG215600 Rh1CG237400 Rh2AG213700 Rh2BG068400 Rh2BG224100 Rh2BG239600 Rh2CG069600 Rh2CG216000 Rh2CG585300 Rh2DG067600 Rh2DG219200 Rh4AG177200 Rh5AG509600 Rh5BG290500 Rh5BG328900 Rh5DG300300 Rh5DG340100 Rh6BG103200 Rh7DG421500
rosa_wichuraiana Rw1G006030 Rw1G006580 Rw2G006320 Rw5G004390 Rw5G029130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 517
AccI GTMKAC 1 cut(s) 309
AclWI GGATC 3 cut(s) 422, 583, 596
AcoI YGGCCR 2 cut(s) 567, 626
AcsI RAATTY 1 cut(s) 496
AdeI CACNNNGTG 1 cut(s) 65
AfiI CCNNNNNNNGG 3 cut(s) 83, 598, 624
AflII CTTAAG 1 cut(s) 53
AgsI TTSAA 4 cut(s) 34, 502, 523, 556
AhlI ACTAGT 1 cut(s) 658
AjnI CCWGG 1 cut(s) 16
AluBI AGCT 4 cut(s) 256, 268, 289, 488
AluI AGCT 4 cut(s) 256, 268, 289, 488
Alw21I GWGCWC 2 cut(s) 70, 490
Alw26I GTCTC 2 cut(s) 152, 359
AlwI GGATC 3 cut(s) 422, 583, 596
Ama87I CYCGRG 1 cut(s) 431
AoxI GGCC 3 cut(s) 567, 615, 626
ApeKI GCWGC 1 cut(s) 265
ApoI RAATTY 1 cut(s) 496
Asp700I GAANNNNTTC 1 cut(s) 255
AspS9I GGNCC 2 cut(s) 46, 74
AsuC2I CCSGG 2 cut(s) 432, 433
AsuHPI GGTGA 1 cut(s) 152
AvaI CYCGRG 1 cut(s) 431
AvaII GGWCC 2 cut(s) 46, 74
BalI TGGCCA 1 cut(s) 628
BamHI GGATCC 1 cut(s) 588
BanII GRGCYC 2 cut(s) 438, 490
BbsI GAAGAC 1 cut(s) 94
Bbv12I GWGCWC 2 cut(s) 70, 490
BbvI GCAGC 1 cut(s) 277
BccI CCATC 1 cut(s) 98
BceAI ACGGC 1 cut(s) 9
BciT130I CCWGG 1 cut(s) 18
BclI TGATCA 1 cut(s) 168
BcnI CCSGG 2 cut(s) 432, 433
BcoDI GTCTC 2 cut(s) 152, 359
BcuI ACTAGT 1 cut(s) 658
BfaI CTAG 2 cut(s) 275, 659
BfrI CTTAAG 1 cut(s) 53
BfuAI ACCTGC 1 cut(s) 517
BisI GCNGC 1 cut(s) 266
BlsI GCNGC 1 cut(s) 267
Bme1390I CCNGG 3 cut(s) 18, 432, 433
Bme18I GGWCC 2 cut(s) 46, 74
BmeT110I CYCGRG 1 cut(s) 431
BmgT120I GGNCC 2 cut(s) 46, 74
BmiI GGNNCC 4 cut(s) 48, 75, 76, 590
BmrFI CCNGG 3 cut(s) 18, 432, 433
BmsI GCATC 1 cut(s) 648
BpiI GAAGAC 1 cut(s) 94
Bpu10I CCTNAGC 1 cut(s) 69
BpuEI CTTGAG 1 cut(s) 279
BpuMI CCSGG 2 cut(s) 432, 433
BsaI GGTCTC 1 cut(s) 359
BsaJI CCNNGG 3 cut(s) 16, 25, 431
BsaWI WCCGGW 1 cut(s) 386
Bsc4I CCNNNNNNNGG 3 cut(s) 83, 598, 624
BseBI CCWGG 1 cut(s) 18
BseDI CCNNGG 3 cut(s) 16, 25, 431
BseGI GGATG 4 cut(s) 179, 310, 562, 639
BseLI CCNNNNNNNGG 3 cut(s) 83, 598, 624
BseMII CTCAG 3 cut(s) 76, 83, 594
BseXI GCAGC 1 cut(s) 277
BshFI GGCC 3 cut(s) 569, 617, 628
BsiHKAI GWGCWC 2 cut(s) 70, 490
BsiHKCI CYCGRG 1 cut(s) 431
BsiSI CCGG 3 cut(s) 387, 432, 566
BslFI GGGAC 2 cut(s) 87, 430
BslI CCNNNNNNNGG 3 cut(s) 83, 598, 624
BsmAI GTCTC 2 cut(s) 152, 359
BsmFI GGGAC 2 cut(s) 87, 430
BsnI GGCC 3 cut(s) 569, 617, 628
Bso31I GGTCTC 1 cut(s) 359
BsoBI CYCGRG 1 cut(s) 431
Bsp1286I GDGCHC 3 cut(s) 70, 438, 490
Bsp143I GATC 5 cut(s) 168, 333, 427, 466, 588
BspANI GGCC 3 cut(s) 569, 617, 628
BspCNI CTCAG 3 cut(s) 75, 82, 593
BspLI GGNNCC 4 cut(s) 48, 75, 76, 590
BspMI ACCTGC 1 cut(s) 517
BspPI GGATC 3 cut(s) 422, 583, 596
BspQI GCTCTTC 1 cut(s) 246
BspTI CTTAAG 1 cut(s) 53
BspTNI GGTCTC 1 cut(s) 359
BssECI CCNNGG 3 cut(s) 16, 25, 431
BssMI GATC 5 cut(s) 168, 333, 427, 466, 588
Bst2UI CCWGG 1 cut(s) 18
Bst4CI ACNGT 1 cut(s) 367
Bst6I CTCTTC 1 cut(s) 246
BstAFI CTTAAG 1 cut(s) 53
BstC8I GCNNGC 2 cut(s) 222, 615
BstDEI CTNAG 5 cut(s) 62, 69, 446, 580, 632
BstDSI CCRYGG 1 cut(s) 25
BstF5I GGATG 4 cut(s) 179, 310, 562, 639
BstKTI GATC 5 cut(s) 171, 336, 430, 469, 591
BstMAI GTCTC 2 cut(s) 152, 359
BstMBI GATC 5 cut(s) 168, 333, 427, 466, 588
BstMWI GCNNNNNNNGC 1 cut(s) 262
BstNI CCWGG 1 cut(s) 18
BstSCI CCNGG 3 cut(s) 16, 430, 431
BstV1I GCAGC 1 cut(s) 277
BstV2I GAAGAC 1 cut(s) 94
BstX2I RGATCY 1 cut(s) 588
BstYI RGATCY 1 cut(s) 588
BsuRI GGCC 3 cut(s) 569, 617, 628
BtgI CCRYGG 1 cut(s) 25
BtsCI GGATG 4 cut(s) 179, 310, 562, 639
BtsI GCAGTG 1 cut(s) 115
BtsIMutI CAGTG 2 cut(s) 70, 115
BveI ACCTGC 1 cut(s) 517
Cac8I GCNNGC 2 cut(s) 222, 615
Cfr13I GGNCC 2 cut(s) 46, 74
Cfr9I CCCGGG 1 cut(s) 431
CspCI CAANNNNNGTGG 2 cut(s) 645, 680
CviAII CATG 3 cut(s) 186, 350, 439
CviJI RGCY 8 cut(s) 256, 268, 289, 436, 488, 569, 617, 628
CviKI_1 RGCY 8 cut(s) 256, 268, 289, 436, 488, 569, 617, 628
DdeI CTNAG 5 cut(s) 62, 69, 446, 580, 632
DpnI GATC 5 cut(s) 170, 335, 429, 468, 590
DpnII GATC 5 cut(s) 168, 333, 427, 466, 588
DraIII CACNNNGTG 1 cut(s) 65
EaeI YGGCCR 2 cut(s) 567, 626
Eam1104I CTCTTC 1 cut(s) 246
EarI CTCTTC 1 cut(s) 246
Ecl136II GAGCTC 1 cut(s) 488
Eco24I GRGCYC 2 cut(s) 438, 490
Eco31I GGTCTC 1 cut(s) 359
Eco47I GGWCC 2 cut(s) 46, 74
Eco53kI GAGCTC 1 cut(s) 488
Eco88I CYCGRG 1 cut(s) 431
EcoICRI GAGCTC 1 cut(s) 488
EcoO109I RGGNCCY 2 cut(s) 46, 74
EcoRII CCWGG 1 cut(s) 16
EcoT22I ATGCAT 1 cut(s) 323
EcoT38I GRGCYC 2 cut(s) 438, 490
FaeI CATG 3 cut(s) 189, 353, 442
FaqI GGGAC 2 cut(s) 87, 430
FatI CATG 3 cut(s) 185, 349, 438
FbaI TGATCA 1 cut(s) 168
FblI GTMKAC 1 cut(s) 309
Fnu4HI GCNGC 1 cut(s) 266
FokI GGATG 4 cut(s) 166, 317, 549, 626
FriOI GRGCYC 2 cut(s) 438, 490
Fsp4HI GCNGC 1 cut(s) 266
FspBI CTAG 2 cut(s) 275, 659
GluI GCNGC 1 cut(s) 266
HaeIII GGCC 3 cut(s) 569, 617, 628
HapII CCGG 3 cut(s) 387, 432, 566
Hin1II CATG 3 cut(s) 189, 353, 442
HinfI GANTC 2 cut(s) 30, 602
HpaII CCGG 3 cut(s) 387, 432, 566
HphI GGTGA 1 cut(s) 152
Hpy166II GTNNAC 2 cut(s) 191, 310
Hpy188I TCNGA 3 cut(s) 471, 492, 583
Hpy188III TCNNGA 3 cut(s) 34, 520, 592
Hpy8I GTNNAC 2 cut(s) 191, 310
HpyCH4III ACNGT 1 cut(s) 367
HpyCH4V TGCA 5 cut(s) 241, 321, 362, 454, 639
HpyF10VI GCNNNNNNNGC 1 cut(s) 262
HpyF3I CTNAG 5 cut(s) 62, 69, 446, 580, 632
Hsp92II CATG 3 cut(s) 189, 353, 442
KflI GGGWCCC 1 cut(s) 74
Ksp22I TGATCA 1 cut(s) 168
Kzo9I GATC 5 cut(s) 168, 333, 427, 466, 588
LguI GCTCTTC 1 cut(s) 246
LmnI GCTCC 1 cut(s) 517
Lsp1109I GCAGC 1 cut(s) 277
LweI GCATC 1 cut(s) 648
MaeI CTAG 2 cut(s) 275, 659
MaeIII GTNAC 4 cut(s) 5, 57, 110, 504
MalI GATC 5 cut(s) 170, 335, 429, 468, 590
MboI GATC 5 cut(s) 168, 333, 427, 466, 588
MboII GAAGA 3 cut(s) 99, 241, 263
MflI RGATCY 1 cut(s) 588
MhlI GDGCHC 3 cut(s) 70, 438, 490
MlsI TGGCCA 1 cut(s) 628
MluCI AATT 1 cut(s) 496
MluNI TGGCCA 1 cut(s) 628
MnlI CCTC 4 cut(s) 193, 229, 579, 628
Mox20I TGGCCA 1 cut(s) 628
Mph1103I ATGCAT 1 cut(s) 323
MroXI GAANNNNTTC 1 cut(s) 255
MscI TGGCCA 1 cut(s) 628
MseI TTAA 3 cut(s) 54, 648, 706
MslI CAYNNNNRTG 1 cut(s) 184
Msp20I TGGCCA 1 cut(s) 628
MspCI CTTAAG 1 cut(s) 53
MspI CCGG 3 cut(s) 387, 432, 566
MspR9I CCNGG 3 cut(s) 18, 432, 433
MvaI CCWGG 1 cut(s) 18
MwoI GCNNNNNNNGC 1 cut(s) 262
NciI CCSGG 2 cut(s) 432, 433
NdeII GATC 5 cut(s) 168, 333, 427, 466, 588
NlaIII CATG 3 cut(s) 189, 353, 442
NlaIV GGNNCC 4 cut(s) 48, 75, 76, 590
NmuCI GTSAC 2 cut(s) 57, 110
NsiI ATGCAT 1 cut(s) 323
PciSI GCTCTTC 1 cut(s) 246
PdmI GAANNNNTTC 1 cut(s) 255
PfeI GAWTC 2 cut(s) 30, 602
PkrI GCNGC 1 cut(s) 267
PpuMI RGGWCCY 2 cut(s) 46, 74
Psp124BI GAGCTC 1 cut(s) 490
Psp5II RGGWCCY 2 cut(s) 46, 74
Psp6I CCWGG 1 cut(s) 16
PspGI CCWGG 1 cut(s) 16
PspN4I GGNNCC 4 cut(s) 48, 75, 76, 590
PspPI GGNCC 2 cut(s) 46, 74
PspPPI RGGWCCY 2 cut(s) 46, 74
PsuI RGATCY 1 cut(s) 588
RseI CAYNNNNRTG 1 cut(s) 184
SacI GAGCTC 1 cut(s) 490
SapI GCTCTTC 1 cut(s) 246
SaqAI TTAA 3 cut(s) 54, 648, 706
SatI GCNGC 1 cut(s) 266
Sau3AI GATC 5 cut(s) 168, 333, 427, 466, 588
Sau96I GGNCC 2 cut(s) 46, 74
ScrFI CCNGG 3 cut(s) 18, 432, 433
SduI GDGCHC 3 cut(s) 70, 438, 490
SetI ASST 7 cut(s) 142, 240, 258, 270, 291, 490, 511
SfaNI GCATC 1 cut(s) 648
SinI GGWCC 2 cut(s) 46, 74
SmaI CCCGGG 1 cut(s) 433
SmiMI CAYNNNNRTG 1 cut(s) 184
SmlI CTYRAG 2 cut(s) 53, 294
SmoI CTYRAG 2 cut(s) 53, 294
SpeI ACTAGT 1 cut(s) 658
Sse9I AATT 1 cut(s) 496
SspI AATATT 1 cut(s) 462
SspMI CTAG 2 cut(s) 275, 659
SstI GAGCTC 1 cut(s) 490
StyD4I CCNGG 3 cut(s) 16, 430, 431
TaaI ACNGT 1 cut(s) 367
TasI AATT 1 cut(s) 496
TfiI GAWTC 2 cut(s) 30, 602
Tru1I TTAA 3 cut(s) 54, 648, 706
Tru9I TTAA 3 cut(s) 54, 648, 706
TscAI CASTG 2 cut(s) 70, 115
TseFI GTSAC 2 cut(s) 57, 110
TseI GCWGC 1 cut(s) 265
Tsp45I GTSAC 2 cut(s) 57, 110
TspDTI ATGAA 2 cut(s) 338, 509
TspGWI ACGGA 2 cut(s) 208, 319
TspMI CCCGGG 1 cut(s) 431
TspRI CASTG 2 cut(s) 70, 115
Vha464I CTTAAG 1 cut(s) 53
VpaK11BI GGWCC 2 cut(s) 46, 74
XapI RAATTY 1 cut(s) 496
XmaI CCCGGG 1 cut(s) 431
XmiI GTMKAC 1 cut(s) 309
XmnI GAANNNNTTC 1 cut(s) 255
XspI CTAG 2 cut(s) 275, 659
Zsp2I ATGCAT 1 cut(s) 323
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.