Rmu_sc0005608.1_g000020

Cell division cycle protein 48 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005608.1
OG0000528
Physical Location & Seq
Reverse (-)
104137 .. 104478
342 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005608.1_g000020.1.cds

Sequence Viewer

Length: 342 bp
ctggaagagagcggcgacgattcggtgctagtggcttcagagaacgactgggaggtcactgcagggtttgtaggattcgattacgactccattgttggacagtgctgcgagtcgcccgtcggagacgaagtaatctttataggtatgattgtttttgtgggatattgttttcattgggcgaaattattgtatataagacttcgacattgttgggagccgaatcgccttgtcgtcgatgaggccatcaacgatgacaactctgtcgtcccgctccaccctgagaccatggagaagctccagctctttaggggcgacacaatcctcatcaaggtgcgattttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04141 ko05134 map04141 map05134
Pfam Domains
Protein Families
CDC48_2 CDC48_N Vps4_C

Protein Analysis

113

Amino Acids

12.88

Weight (kDa)

4.35

Isoelectric Point (pI)

30.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000528)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G49650
fragaria_vesca FvH4_1g18770 FvH4_1g18770 FvH4_7g34230
malus_domestica MD01G1046900.v1.1 MD15G1305400.v1.1 MD16G1282300.v1.1
prunus_persica Prupe.6G211700_v2.0.a1 Prupe.6G211700_v2.0.a1
pyrus_communis pycom01g07280 pycom15g26860 pycom16g25190 pycom16g25200
rosa_chinensis RchiOBHm_Chr1g0351151 RchiOBHm_Chr2g0109641 RchiOBHm_Chr4g0386971 RchiOBHm_Chr4g0413031 RchiOBHm_Chr4g0429541
rosa_laevigata RLG00000007037 RLG00000009264 RLG00000009427 RLG00000015442 RLG00000017752 RLG00000017990 RLG00000022570 RLG00000028427
rosa_multiflora Rmu_sc0000031.1_g000013 Rmu_sc0000332.1_g000058 Rmu_sc0000346.1_g000014 Rmu_sc0000698.1_g000147 Rmu_sc0001152.1_g000047 Rmu_sc0001494.1_g000003 Rmu_sc0002254.1_g000001 Rmu_sc0002531.1_g000001 Rmu_sc0002717.1_g000016 Rmu_sc0002717.1_g000017 Rmu_sc0003220.1_g000024 Rmu_sc0005016.1_g000007 Rmu_sc0005608.1_g000020 Rmu_sc0010686.1_g000003 Rmu_sc0011012.1_g000011 Rmu_sc0021503.1_g000001
rosa_roxburghii Rroxscaffold_2G00082300 Rroxscaffold_2G00099190 Rroxscaffold_2G00129660 Rroxscaffold_2G00134070 Rroxscaffold_3G00236170 Rroxscaffold_5G00346460 Rroxscaffold_7G00156600 Rroxscaffold_7G00205430
rosa_rugosa Rorug01G0267800 Rorug02G0020700 Rorug02G0020700 Rorug02G0161500 Rorug02G0384900 Rorug05G0567000
rosa_samantha Rh1AG062400 Rh1AG132200 Rh1AG231500 Rh1CG126100 Rh1CG184600 Rh1CG215600 Rh1CG237400 Rh2AG213700 Rh2BG068400 Rh2BG224100 Rh2BG239600 Rh2CG069600 Rh2CG216000 Rh2CG585300 Rh2DG067600 Rh2DG219200 Rh4AG177200 Rh5AG509600 Rh5BG290500 Rh5BG328900 Rh5DG300300 Rh5DG340100 Rh6BG103200 Rh7DG421500
rosa_wichuraiana Rw1G006030 Rw1G006580 Rw2G006320 Rw5G004390 Rw5G029130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 53, 260
AccBSI CCGCTC 2 cut(s) 12, 271
AciI CCGC 2 cut(s) 12, 269
AcuI CTGAAG 1 cut(s) 21
AfiI CCNNNNNNNGG 1 cut(s) 328
AluBI AGCT 2 cut(s) 295, 301
AluI AGCT 2 cut(s) 295, 301
Alw26I GTCTC 2 cut(s) 117, 275
AoxI GGCC 1 cut(s) 240
ApeKI GCWGC 1 cut(s) 105
BbvI GCAGC 1 cut(s) 92
BccI CCATC 1 cut(s) 251
BcoDI GTCTC 2 cut(s) 117, 275
BfaI CTAG 1 cut(s) 29
BfmI CTRYAG 1 cut(s) 60
BisI GCNGC 2 cut(s) 13, 106
BlsI GCNGC 2 cut(s) 14, 107
BmiI GGNNCC 1 cut(s) 216
BmrI ACTGGG 1 cut(s) 58
BmuI ACTGGG 1 cut(s) 58
BpmI CTGGAG 1 cut(s) 281
BsaI GGTCTC 1 cut(s) 275
BsaJI CCNNGG 1 cut(s) 285
BsaXI ACNNNNNCTCC 2 cut(s) 114, 144
Bsc4I CCNNNNNNNGG 1 cut(s) 328
Bse1I ACTGG 1 cut(s) 53
BseDI CCNNGG 1 cut(s) 285
BseLI CCNNNNNNNGG 1 cut(s) 328
BseMII CTCAG 1 cut(s) 270
BseNI ACTGG 1 cut(s) 53
BseXI GCAGC 1 cut(s) 92
BshFI GGCC 1 cut(s) 242
BslFI GGGAC 1 cut(s) 251
BslI CCNNNNNNNGG 1 cut(s) 328
BsmAI GTCTC 2 cut(s) 117, 275
BsmBI CGTCTC 1 cut(s) 117
BsmFI GGGAC 1 cut(s) 251
BsnI GGCC 1 cut(s) 242
Bso31I GGTCTC 1 cut(s) 275
Bsp19I CCATGG 1 cut(s) 285
BspACI CCGC 2 cut(s) 12, 269
BspANI GGCC 1 cut(s) 242
BspCNI CTCAG 1 cut(s) 271
BspLI GGNNCC 1 cut(s) 216
BspMAI CTGCAG 1 cut(s) 64
BspTNI GGTCTC 1 cut(s) 275
BsrBI CCGCTC 2 cut(s) 12, 271
BsrI ACTGG 1 cut(s) 53
BssECI CCNNGG 1 cut(s) 285
BssT1I CCWWGG 1 cut(s) 285
Bst4CI ACNGT 1 cut(s) 102
BstDEI CTNAG 1 cut(s) 279
BstDSI CCRYGG 1 cut(s) 285
BstENI CCTNNNNNAGG 1 cut(s) 326
BstMAI GTCTC 2 cut(s) 117, 275
BstSFI CTRYAG 1 cut(s) 60
BstV1I GCAGC 1 cut(s) 92
BsuRI GGCC 1 cut(s) 242
BtgI CCRYGG 1 cut(s) 285
BtsI GCAGTG 1 cut(s) 57
BtsIMutI CAGTG 2 cut(s) 57, 107
CviAII CATG 1 cut(s) 286
CviJI RGCY 5 cut(s) 35, 217, 242, 295, 301
CviKI_1 RGCY 5 cut(s) 35, 217, 242, 295, 301
DdeI CTNAG 1 cut(s) 279
DrdI GACNNNNNNGTC 2 cut(s) 53, 260
DseDI GACNNNNNNGTC 2 cut(s) 53, 260
Eco130I CCWWGG 1 cut(s) 285
Eco31I GGTCTC 1 cut(s) 275
Eco57I CTGAAG 1 cut(s) 21
EcoNI CCTNNNNNAGG 1 cut(s) 326
EcoT14I CCWWGG 1 cut(s) 285
ErhI CCWWGG 1 cut(s) 285
Esp3I CGTCTC 1 cut(s) 117
FaeI CATG 1 cut(s) 289
FaiI YATR 5 cut(s) 140, 146, 192, 194, 287
FaqI GGGAC 1 cut(s) 251
FatI CATG 1 cut(s) 285
FauI CCCGC 1 cut(s) 276
Fnu4HI GCNGC 2 cut(s) 13, 106
Fsp4HI GCNGC 2 cut(s) 13, 106
FspBI CTAG 1 cut(s) 29
GluI GCNGC 2 cut(s) 13, 106
GsuI CTGGAG 1 cut(s) 281
HaeIII GGCC 1 cut(s) 242
Hin1II CATG 1 cut(s) 289
HinfI GANTC 5 cut(s) 20, 75, 86, 110, 220
Hpy188I TCNGA 2 cut(s) 40, 122
Hpy99I CGWCG 3 cut(s) 20, 122, 236
HpyCH4III ACNGT 1 cut(s) 102
HpyCH4V TGCA 1 cut(s) 62
HpyF3I CTNAG 1 cut(s) 279
Hsp92II CATG 1 cut(s) 289
LmnI GCTCC 3 cut(s) 214, 276, 300
LpnPI CCDG 4 cut(s) 34, 48, 291, 311
Lsp1109I GCAGC 1 cut(s) 92
MaeI CTAG 1 cut(s) 29
MaeIII GTNAC 1 cut(s) 55
MbiI CCGCTC 2 cut(s) 12, 271
MboII GAAGA 1 cut(s) 17
MluCI AATT 1 cut(s) 182
MlyI GAGTC 2 cut(s) 80, 119
MmeI TCCRAC 2 cut(s) 76, 100
MnlI CCTC 3 cut(s) 46, 232, 332
MslI CAYNNNNRTG 1 cut(s) 329
NcoI CCATGG 1 cut(s) 285
NlaIII CATG 1 cut(s) 289
NlaIV GGNNCC 1 cut(s) 216
NmuCI GTSAC 1 cut(s) 55
PfeI GAWTC 3 cut(s) 20, 75, 220
PkrI GCNGC 2 cut(s) 14, 107
PleI GAGTC 2 cut(s) 80, 118
PpsI GAGTC 2 cut(s) 80, 118
PspN4I GGNNCC 1 cut(s) 216
PstI CTGCAG 1 cut(s) 64
RseI CAYNNNNRTG 1 cut(s) 329
SatI GCNGC 2 cut(s) 13, 106
SchI GAGTC 2 cut(s) 80, 119
SetI ASST 5 cut(s) 57, 145, 297, 303, 333
SfcI CTRYAG 1 cut(s) 60
SmiMI CAYNNNNRTG 1 cut(s) 329
Sse9I AATT 1 cut(s) 182
SsiI CCGC 2 cut(s) 12, 269
SspMI CTAG 1 cut(s) 29
StyI CCWWGG 1 cut(s) 285
TaaI ACNGT 1 cut(s) 102
TaqI TCGA 3 cut(s) 78, 202, 234
TasI AATT 1 cut(s) 182
TauI GCSGC 1 cut(s) 15
TfiI GAWTC 3 cut(s) 20, 75, 220
TscAI CASTG 2 cut(s) 64, 107
TseFI GTSAC 1 cut(s) 55
TseI GCWGC 1 cut(s) 105
Tsp45I GTSAC 1 cut(s) 55
TspDTI ATGAA 1 cut(s) 161
TspRI CASTG 2 cut(s) 64, 107
XagI CCTNNNNNAGG 1 cut(s) 326
XspI CTAG 1 cut(s) 29
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.