RLG00000017990
ERF Family

Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
Physical Location & Seq
Reverse (-)
24115172 .. 24116640
1469 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000017990

Sequence Viewer

Length: 564 bp
ATGGTAGCAGAGGTGCAATCGTTAGAAGAGCTTCCAAAGCAGCTATTCCTGGAAATATATGAGCTTTCTCAAGCAAAGCTTGCATGGCCTGACGTTATCAATTCTGGAGAGGATACAGAATCGAACCAAGGAGAAGAAGATGTCTACACAAACTGCATATCGTCCGTGATCTCTGGGGTTGTTCATGGTCTCAATGCAACTGTGTTTGCGTATGGTTCTACCGGAAGTGGTAAAACATATACAATGGTGGGGACACAGAATGATCCCGCGCTCATGGTTCTCAGTTTGCATACAATATTTGATCTGATAAAAAAGGACAAGAGCTCTGATGAATTTGAAGTTACCTGCTCCTATCTTGAAGTCTATAACGAAGTTATCTATGATTTGCTTGAAAAGTCATCCGGCCATTTGGAACTCAGAGAGGATCCAGAGCAAGGAATCATTGTTGCTGGCCTCAGGTGTATAAAGGTTCAGTCAGCTGATAAGATCCTTGAACTCTTAAACGTGGGGAACAGCCGACGGAAAACTGAAAGCACGGAGGCTAATGCAACATCTTCTCGGTAG

Protein Analysis

188

Amino Acids

20.6

Weight (kDa)

4.5

Isoelectric Point (pI)

32.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Kinesin PF00225 41 - 187 7.3e-49 Kinesin motor domain
Microtub_bd PF16796 44 - 130 2.3e-16 Microtubule binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000528)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G49650
fragaria_vesca FvH4_1g18770 FvH4_1g18770 FvH4_7g34230
malus_domestica MD01G1046900.v1.1 MD15G1305400.v1.1 MD16G1282300.v1.1
prunus_persica Prupe.6G211700_v2.0.a1 Prupe.6G211700_v2.0.a1
pyrus_communis pycom01g07280 pycom15g26860 pycom16g25190 pycom16g25200
rosa_chinensis RchiOBHm_Chr1g0351151 RchiOBHm_Chr2g0109641 RchiOBHm_Chr4g0386971 RchiOBHm_Chr4g0413031 RchiOBHm_Chr4g0429541
rosa_laevigata RLG00000007037 RLG00000009264 RLG00000009427 RLG00000015442 RLG00000017752 RLG00000017990 RLG00000022570 RLG00000028427
rosa_multiflora Rmu_sc0000031.1_g000013 Rmu_sc0000332.1_g000058 Rmu_sc0000346.1_g000014 Rmu_sc0000698.1_g000147 Rmu_sc0001152.1_g000047 Rmu_sc0001494.1_g000003 Rmu_sc0002254.1_g000001 Rmu_sc0002531.1_g000001 Rmu_sc0002717.1_g000016 Rmu_sc0002717.1_g000017 Rmu_sc0003220.1_g000024 Rmu_sc0005016.1_g000007 Rmu_sc0005608.1_g000020 Rmu_sc0010686.1_g000003 Rmu_sc0011012.1_g000011 Rmu_sc0021503.1_g000001
rosa_roxburghii Rroxscaffold_2G00082300 Rroxscaffold_2G00099190 Rroxscaffold_2G00129660 Rroxscaffold_2G00134070 Rroxscaffold_3G00236170 Rroxscaffold_5G00346460 Rroxscaffold_7G00156600 Rroxscaffold_7G00205430
rosa_rugosa Rorug01G0267800 Rorug02G0020700 Rorug02G0020700 Rorug02G0161500 Rorug02G0384900 Rorug05G0567000
rosa_samantha Rh1AG062400 Rh1AG132200 Rh1AG231500 Rh1CG126100 Rh1CG184600 Rh1CG215600 Rh1CG237400 Rh2AG213700 Rh2BG068400 Rh2BG224100 Rh2BG239600 Rh2CG069600 Rh2CG216000 Rh2CG585300 Rh2DG067600 Rh2DG219200 Rh4AG177200 Rh5AG509600 Rh5BG290500 Rh5BG328900 Rh5DG300300 Rh5DG340100 Rh6BG103200 Rh7DG421500
rosa_wichuraiana Rw1G006030 Rw1G006580 Rw2G006320 Rw5G004390 Rw5G029130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 353
AccI GTMKAC 1 cut(s) 144
AccII CGCG 1 cut(s) 269
AciI CCGC 1 cut(s) 267
AclWI GGATC 4 cut(s) 257, 419, 432, 481
AcoI YGGCCR 1 cut(s) 403
AcsI RAATTY 1 cut(s) 332
AfiI CCNNNNNNNGG 1 cut(s) 434
AgsI TTSAA 4 cut(s) 338, 359, 392, 494
AjnI CCWGG 1 cut(s) 48
AluBI AGCT 6 cut(s) 31, 43, 64, 79, 324, 479
AluI AGCT 6 cut(s) 31, 43, 64, 79, 324, 479
Alw21I GWGCWC 1 cut(s) 326
Alw26I GTCTC 1 cut(s) 194
AlwI GGATC 4 cut(s) 257, 419, 432, 481
AoxI GGCC 3 cut(s) 86, 403, 451
ApeKI GCWGC 1 cut(s) 40
ApoI RAATTY 1 cut(s) 332
Asp700I GAANNNNTTC 1 cut(s) 30
AspLEI GCGC 1 cut(s) 271
AxyI CCTNAGG 1 cut(s) 455
BamHI GGATCC 1 cut(s) 424
BanII GRGCYC 1 cut(s) 326
Bbv12I GWGCWC 1 cut(s) 326
BbvI GCAGC 1 cut(s) 52
BciT130I CCWGG 1 cut(s) 50
BciVI GTATCC 1 cut(s) 106
BcoDI GTCTC 1 cut(s) 194
BfuAI ACCTGC 1 cut(s) 353
BfuI GTATCC 1 cut(s) 106
BisI GCNGC 1 cut(s) 41
BlsI GCNGC 1 cut(s) 42
Bme1390I CCNGG 1 cut(s) 50
BmiI GGNNCC 1 cut(s) 426
BmrFI CCNGG 1 cut(s) 50
BpmI CTGGAG 1 cut(s) 126
BpuEI CTTGAG 1 cut(s) 54
BsaI GGTCTC 1 cut(s) 194
BsaJI CCNNGG 1 cut(s) 127
BsaWI WCCGGW 1 cut(s) 221
Bsc4I CCNNNNNNNGG 1 cut(s) 434
Bse21I CCTNAGG 1 cut(s) 455
BseBI CCWGG 1 cut(s) 50
BseDI CCNNGG 1 cut(s) 127
BseGI GGATG 1 cut(s) 398
BseLI CCNNNNNNNGG 1 cut(s) 434
BseMII CTCAG 3 cut(s) 295, 430, 469
BseXI GCAGC 1 cut(s) 52
Bsh1236I CGCG 1 cut(s) 269
BshFI GGCC 3 cut(s) 88, 405, 453
BsiHKAI GWGCWC 1 cut(s) 326
BsiSI CCGG 2 cut(s) 222, 402
BslFI GGGAC 1 cut(s) 265
BslI CCNNNNNNNGG 1 cut(s) 434
BsmAI GTCTC 1 cut(s) 194
BsmFI GGGAC 1 cut(s) 265
BsnI GGCC 3 cut(s) 88, 405, 453
Bso31I GGTCTC 1 cut(s) 194
Bsp1286I GDGCHC 1 cut(s) 326
Bsp143I GATC 5 cut(s) 168, 262, 301, 424, 486
BspACI CCGC 1 cut(s) 267
BspANI GGCC 3 cut(s) 88, 405, 453
BspCNI CTCAG 3 cut(s) 294, 429, 468
BspFNI CGCG 1 cut(s) 269
BspLI GGNNCC 1 cut(s) 426
BspMI ACCTGC 1 cut(s) 353
BspPI GGATC 4 cut(s) 257, 419, 432, 481
BspQI GCTCTTC 1 cut(s) 21
BspTNI GGTCTC 1 cut(s) 194
BssECI CCNNGG 1 cut(s) 127
BssMI GATC 5 cut(s) 168, 262, 301, 424, 486
BssT1I CCWWGG 1 cut(s) 127
Bst2UI CCWGG 1 cut(s) 50
Bst4CI ACNGT 1 cut(s) 202
Bst6I CTCTTC 1 cut(s) 21
BstAPI GCANNNNNTGC 1 cut(s) 80
BstC8I GCNNGC 2 cut(s) 81, 451
BstDEI CTNAG 3 cut(s) 281, 416, 455
BstF5I GGATG 1 cut(s) 398
BstFNI CGCG 1 cut(s) 269
BstHHI GCGC 1 cut(s) 271
BstKTI GATC 5 cut(s) 171, 265, 304, 427, 489
BstMAI GTCTC 1 cut(s) 194
BstMBI GATC 5 cut(s) 168, 262, 301, 424, 486
BstMWI GCNNNNNNNGC 3 cut(s) 37, 80, 85
BstNI CCWGG 1 cut(s) 50
BstSCI CCNGG 1 cut(s) 48
BstUI CGCG 1 cut(s) 269
BstV1I GCAGC 1 cut(s) 52
BstX2I RGATCY 2 cut(s) 424, 486
BstYI RGATCY 2 cut(s) 424, 486
Bsu36I CCTNAGG 1 cut(s) 455
BsuI GTATCC 1 cut(s) 106
BsuRI GGCC 3 cut(s) 88, 405, 453
BtsCI GGATG 1 cut(s) 398
BveI ACCTGC 1 cut(s) 353
Cac8I GCNNGC 2 cut(s) 81, 451
CfoI GCGC 1 cut(s) 271
CviAII CATG 3 cut(s) 84, 185, 274
DdeI CTNAG 3 cut(s) 281, 416, 455
DpnI GATC 5 cut(s) 170, 264, 303, 426, 488
DpnII GATC 5 cut(s) 168, 262, 301, 424, 486
EaeI YGGCCR 1 cut(s) 403
Eam1104I CTCTTC 1 cut(s) 21
EarI CTCTTC 1 cut(s) 21
Ecl136II GAGCTC 1 cut(s) 324
Eco130I CCWWGG 1 cut(s) 127
Eco24I GRGCYC 1 cut(s) 326
Eco31I GGTCTC 1 cut(s) 194
Eco53kI GAGCTC 1 cut(s) 324
Eco81I CCTNAGG 1 cut(s) 455
EcoICRI GAGCTC 1 cut(s) 324
EcoRII CCWGG 1 cut(s) 48
EcoT14I CCWWGG 1 cut(s) 127
EcoT38I GRGCYC 1 cut(s) 326
ErhI CCWWGG 1 cut(s) 127
FaeI CATG 3 cut(s) 87, 188, 277
FalI AAGNNNNNCTT 2 cut(s) 63, 95
FaqI GGGAC 1 cut(s) 265
FatI CATG 3 cut(s) 83, 184, 273
FauI CCCGC 1 cut(s) 274
FblI GTMKAC 1 cut(s) 144
Fnu4HI GCNGC 1 cut(s) 41
FokI GGATG 1 cut(s) 385
FriOI GRGCYC 1 cut(s) 326
Fsp4HI GCNGC 1 cut(s) 41
GlaI GCGC 1 cut(s) 270
GluI GCNGC 1 cut(s) 41
GsuI CTGGAG 1 cut(s) 126
HaeIII GGCC 3 cut(s) 88, 405, 453
HapII CCGG 2 cut(s) 222, 402
HhaI GCGC 1 cut(s) 271
Hin1II CATG 3 cut(s) 87, 188, 277
Hin6I GCGC 1 cut(s) 269
HinP1I GCGC 1 cut(s) 269
HindIII AAGCTT 1 cut(s) 77
HinfI GANTC 2 cut(s) 119, 438
HpaII CCGG 2 cut(s) 222, 402
Hpy166II GTNNAC 1 cut(s) 145
Hpy188I TCNGA 3 cut(s) 306, 328, 419
Hpy188III TCNNGA 3 cut(s) 105, 356, 428
Hpy8I GTNNAC 1 cut(s) 145
Hpy99I CGWCG 1 cut(s) 522
HpyCH4III ACNGT 1 cut(s) 202
HpyCH4IV ACGT 2 cut(s) 93, 504
HpyCH4V TGCA 6 cut(s) 16, 83, 156, 197, 289, 548
HpyF10VI GCNNNNNNNGC 3 cut(s) 37, 80, 85
HpyF3I CTNAG 3 cut(s) 281, 416, 455
HpySE526I ACGT 2 cut(s) 93, 504
Hsp92II CATG 3 cut(s) 87, 188, 277
HspAI GCGC 1 cut(s) 269
Kzo9I GATC 5 cut(s) 168, 262, 301, 424, 486
LguI GCTCTTC 1 cut(s) 21
LmnI GCTCC 1 cut(s) 353
Lsp1109I GCAGC 1 cut(s) 52
MaeII ACGT 2 cut(s) 93, 504
MaeIII GTNAC 1 cut(s) 340
MalI GATC 5 cut(s) 170, 264, 303, 426, 488
MboI GATC 5 cut(s) 168, 262, 301, 424, 486
MboII GAAGA 4 cut(s) 38, 146, 149, 546
MflI RGATCY 2 cut(s) 424, 486
MhlI GDGCHC 1 cut(s) 326
MluCI AATT 2 cut(s) 100, 332
MnlI CCTC 5 cut(s) 4, 103, 415, 464, 532
MroXI GAANNNNTTC 1 cut(s) 30
MseI TTAA 1 cut(s) 500
MspA1I CMGCKG 1 cut(s) 479
MspI CCGG 2 cut(s) 222, 402
MspR9I CCNGG 1 cut(s) 50
MvaI CCWGG 1 cut(s) 50
MvnI CGCG 1 cut(s) 269
MwoI GCNNNNNNNGC 3 cut(s) 37, 80, 85
NdeII GATC 5 cut(s) 168, 262, 301, 424, 486
NlaIII CATG 3 cut(s) 87, 188, 277
NlaIV GGNNCC 1 cut(s) 426
PciSI GCTCTTC 1 cut(s) 21
PdmI GAANNNNTTC 1 cut(s) 30
PfeI GAWTC 2 cut(s) 119, 438
PfoI TCCNGGA 1 cut(s) 48
PkrI GCNGC 1 cut(s) 42
Psp124BI GAGCTC 1 cut(s) 326
Psp6I CCWGG 1 cut(s) 48
PspGI CCWGG 1 cut(s) 48
PspN4I GGNNCC 1 cut(s) 426
PsuI RGATCY 2 cut(s) 424, 486
PvuII CAGCTG 1 cut(s) 479
SacI GAGCTC 1 cut(s) 326
SapI GCTCTTC 1 cut(s) 21
SaqAI TTAA 1 cut(s) 500
SatI GCNGC 1 cut(s) 41
Sau3AI GATC 5 cut(s) 168, 262, 301, 424, 486
ScrFI CCNGG 1 cut(s) 50
SduI GDGCHC 1 cut(s) 326
SmlI CTYRAG 1 cut(s) 69
SmoI CTYRAG 1 cut(s) 69
Sse9I AATT 2 cut(s) 100, 332
SsiI CCGC 1 cut(s) 267
SspI AATATT 1 cut(s) 297
SstI GAGCTC 1 cut(s) 326
StyD4I CCNGG 1 cut(s) 48
StyI CCWWGG 1 cut(s) 127
TaaI ACNGT 1 cut(s) 202
TaiI ACGT 2 cut(s) 96, 507
TaqI TCGA 1 cut(s) 122
TasI AATT 2 cut(s) 100, 332
TfiI GAWTC 2 cut(s) 119, 438
Tru1I TTAA 1 cut(s) 500
Tru9I TTAA 1 cut(s) 500
TseI GCWGC 1 cut(s) 40
TspDTI ATGAA 2 cut(s) 173, 345
TspGWI ACGGA 3 cut(s) 154, 535, 551
XapI RAATTY 1 cut(s) 332
XmiI GTMKAC 1 cut(s) 144
XmnI GAANNNNTTC 1 cut(s) 30
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.