RchiOBHm_Chr4g0429541

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0000528
Physical Location & Seq
Reverse (-)
54342000 .. 54342917
918 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ39832

Sequence Viewer

Length: 213 bp
ATGATCATATCATCATCCTCATGTGGACGGACTACTTGCGTCAAATGGTGGCGGCAAGCAGAGAAGATTGAGGTGCAATCGTTAGAAGAGCTTCCAAAGCAGCTATTCCTGGAAATATATGAGCTTTCTCAAGCAAAGGTTTGTTTATGTGTGTGTGTGTGTGTGTGTGTGTATTTGGTGATATTGTTTAATTTCATGGAACTTAGCTGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

70

Amino Acids

8.09

Weight (kDa)

5.23

Isoelectric Point (pI)

52.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000528)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G49650
fragaria_vesca FvH4_1g18770 FvH4_1g18770 FvH4_7g34230
malus_domestica MD01G1046900.v1.1 MD15G1305400.v1.1 MD16G1282300.v1.1
prunus_persica Prupe.6G211700_v2.0.a1 Prupe.6G211700_v2.0.a1
pyrus_communis pycom01g07280 pycom15g26860 pycom16g25190 pycom16g25200
rosa_chinensis RchiOBHm_Chr1g0351151 RchiOBHm_Chr2g0109641 RchiOBHm_Chr4g0386971 RchiOBHm_Chr4g0413031 RchiOBHm_Chr4g0429541
rosa_laevigata RLG00000007037 RLG00000009264 RLG00000009427 RLG00000015442 RLG00000017752 RLG00000017990 RLG00000022570 RLG00000028427
rosa_multiflora Rmu_sc0000031.1_g000013 Rmu_sc0000332.1_g000058 Rmu_sc0000346.1_g000014 Rmu_sc0000698.1_g000147 Rmu_sc0001152.1_g000047 Rmu_sc0001494.1_g000003 Rmu_sc0002254.1_g000001 Rmu_sc0002531.1_g000001 Rmu_sc0002717.1_g000016 Rmu_sc0002717.1_g000017 Rmu_sc0003220.1_g000024 Rmu_sc0005016.1_g000007 Rmu_sc0005608.1_g000020 Rmu_sc0010686.1_g000003 Rmu_sc0011012.1_g000011 Rmu_sc0021503.1_g000001
rosa_roxburghii Rroxscaffold_2G00082300 Rroxscaffold_2G00099190 Rroxscaffold_2G00129660 Rroxscaffold_2G00134070 Rroxscaffold_3G00236170 Rroxscaffold_5G00346460 Rroxscaffold_7G00156600 Rroxscaffold_7G00205430
rosa_rugosa Rorug01G0267800 Rorug02G0020700 Rorug02G0020700 Rorug02G0161500 Rorug02G0384900 Rorug05G0567000
rosa_samantha Rh1AG062400 Rh1AG132200 Rh1AG231500 Rh1CG126100 Rh1CG184600 Rh1CG215600 Rh1CG237400 Rh2AG213700 Rh2BG068400 Rh2BG224100 Rh2BG239600 Rh2CG069600 Rh2CG216000 Rh2CG585300 Rh2DG067600 Rh2DG219200 Rh4AG177200 Rh5AG509600 Rh5BG290500 Rh5BG328900 Rh5DG300300 Rh5DG340100 Rh6BG103200 Rh7DG421500
rosa_wichuraiana Rw1G006030 Rw1G006580 Rw2G006320 Rw5G004390 Rw5G029130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 52
AjnI CCWGG 1 cut(s) 108
AluBI AGCT 4 cut(s) 91, 103, 124, 207
AluI AGCT 4 cut(s) 91, 103, 124, 207
ApeKI GCWGC 1 cut(s) 100
Asp700I GAANNNNTTC 1 cut(s) 90
AsuHPI GGTGA 1 cut(s) 190
BbvI GCAGC 1 cut(s) 112
BciT130I CCWGG 1 cut(s) 110
BclI TGATCA 1 cut(s) 3
BisI GCNGC 2 cut(s) 53, 101
BlsI GCNGC 2 cut(s) 54, 102
Bme1390I CCNGG 1 cut(s) 110
BmrFI CCNGG 1 cut(s) 110
BpuEI CTTGAG 1 cut(s) 114
BseBI CCWGG 1 cut(s) 110
BseGI GGATG 1 cut(s) 14
BseXI GCAGC 1 cut(s) 112
Bsp143I GATC 1 cut(s) 3
BspACI CCGC 1 cut(s) 52
BspQI GCTCTTC 1 cut(s) 81
BssMI GATC 1 cut(s) 3
Bst2UI CCWGG 1 cut(s) 110
Bst6I CTCTTC 1 cut(s) 81
BstC8I GCNNGC 1 cut(s) 57
BstDEI CTNAG 1 cut(s) 203
BstF5I GGATG 1 cut(s) 14
BstKTI GATC 1 cut(s) 6
BstMBI GATC 1 cut(s) 3
BstMWI GCNNNNNNNGC 1 cut(s) 97
BstNI CCWGG 1 cut(s) 110
BstSCI CCNGG 1 cut(s) 108
BstV1I GCAGC 1 cut(s) 112
BtsCI GGATG 1 cut(s) 14
Cac8I GCNNGC 1 cut(s) 57
CseI GACGC 1 cut(s) 28
CviAII CATG 2 cut(s) 21, 196
CviJI RGCY 4 cut(s) 91, 103, 124, 207
CviKI_1 RGCY 4 cut(s) 91, 103, 124, 207
DdeI CTNAG 1 cut(s) 203
DpnI GATC 1 cut(s) 5
DpnII GATC 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 81
EarI CTCTTC 1 cut(s) 81
EcoRII CCWGG 1 cut(s) 108
FaeI CATG 2 cut(s) 24, 199
FaiI YATR 6 cut(s) 8, 22, 118, 120, 148, 197
FatI CATG 2 cut(s) 20, 195
FbaI TGATCA 1 cut(s) 3
Fnu4HI GCNGC 2 cut(s) 53, 101
Fsp4HI GCNGC 2 cut(s) 53, 101
GluI GCNGC 2 cut(s) 53, 101
HgaI GACGC 1 cut(s) 28
Hin1II CATG 2 cut(s) 24, 199
HphI GGTGA 1 cut(s) 190
Hpy166II GTNNAC 1 cut(s) 26
Hpy8I GTNNAC 1 cut(s) 26
HpyCH4V TGCA 1 cut(s) 76
HpyF10VI GCNNNNNNNGC 1 cut(s) 97
HpyF3I CTNAG 1 cut(s) 203
Hsp92II CATG 2 cut(s) 24, 199
Ksp22I TGATCA 1 cut(s) 3
Kzo9I GATC 1 cut(s) 3
LguI GCTCTTC 1 cut(s) 81
LpnPI CCDG 2 cut(s) 95, 122
Lsp1109I GCAGC 1 cut(s) 112
MalI GATC 1 cut(s) 5
MboI GATC 1 cut(s) 3
MboII GAAGA 2 cut(s) 76, 98
MluCI AATT 1 cut(s) 190
MnlI CCTC 2 cut(s) 28, 64
MroXI GAANNNNTTC 1 cut(s) 90
MseI TTAA 1 cut(s) 189
MslI CAYNNNNRTG 1 cut(s) 19
MspR9I CCNGG 1 cut(s) 110
MvaI CCWGG 1 cut(s) 110
MwoI GCNNNNNNNGC 1 cut(s) 97
NdeII GATC 1 cut(s) 3
NlaIII CATG 2 cut(s) 24, 199
PciSI GCTCTTC 1 cut(s) 81
PdmI GAANNNNTTC 1 cut(s) 90
PfoI TCCNGGA 1 cut(s) 108
PkrI GCNGC 2 cut(s) 54, 102
Psp6I CCWGG 1 cut(s) 108
PspGI CCWGG 1 cut(s) 108
RseI CAYNNNNRTG 1 cut(s) 19
SapI GCTCTTC 1 cut(s) 81
SaqAI TTAA 1 cut(s) 189
SatI GCNGC 2 cut(s) 53, 101
Sau3AI GATC 1 cut(s) 3
ScrFI CCNGG 1 cut(s) 110
SetI ASST 6 cut(s) 75, 93, 105, 126, 141, 209
SgeI CNNG 7 cut(s) 33, 48, 68, 121, 122, 143, 208
SmiMI CAYNNNNRTG 1 cut(s) 19
SmlI CTYRAG 1 cut(s) 129
SmoI CTYRAG 1 cut(s) 129
Sse9I AATT 1 cut(s) 190
SsiI CCGC 1 cut(s) 52
StyD4I CCNGG 1 cut(s) 108
TasI AATT 1 cut(s) 190
TauI GCSGC 1 cut(s) 55
Tru1I TTAA 1 cut(s) 189
Tru9I TTAA 1 cut(s) 189
TseI GCWGC 1 cut(s) 100
TspDTI ATGAA 1 cut(s) 184
TspGWI ACGGA 1 cut(s) 43
XmnI GAANNNNTTC 1 cut(s) 90
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.