Rmu_sc0003220.1_g000024

Cell division

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003220.1
OG0000528
Physical Location & Seq
Forward (+)
48804 .. 50183
1380 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003220.1_g000024.1.cds

Sequence Viewer

Length: 279 bp
atggggccacccctagaggtattgggcatggcgccgccaccactaatggttatggcaatgtggcttaggtcgggctcccagcaaggaaacgtgggaggcccaaaggggactaagagggatttcagctctgcgattctcgagcggaagaaggcagggaatcgccttgtcatcgatgaggccatcaatgatgtcaactctgtcgtcgcgctccaccctgagaccatggagaagctccagctctttaggggcaacacaatcctcatcaaggtgcgattttga

Protein Analysis

92

Amino Acids

10.07

Weight (kDa)

9.98

Isoelectric Point (pI)

38.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000528)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G49650
fragaria_vesca FvH4_1g18770 FvH4_1g18770 FvH4_7g34230
malus_domestica MD01G1046900.v1.1 MD15G1305400.v1.1 MD16G1282300.v1.1
prunus_persica Prupe.6G211700_v2.0.a1 Prupe.6G211700_v2.0.a1
pyrus_communis pycom01g07280 pycom15g26860 pycom16g25190 pycom16g25200
rosa_chinensis RchiOBHm_Chr1g0351151 RchiOBHm_Chr2g0109641 RchiOBHm_Chr4g0386971 RchiOBHm_Chr4g0413031 RchiOBHm_Chr4g0429541
rosa_laevigata RLG00000007037 RLG00000009264 RLG00000009427 RLG00000015442 RLG00000017752 RLG00000017990 RLG00000022570 RLG00000028427
rosa_multiflora Rmu_sc0000031.1_g000013 Rmu_sc0000332.1_g000058 Rmu_sc0000346.1_g000014 Rmu_sc0000698.1_g000147 Rmu_sc0001152.1_g000047 Rmu_sc0001494.1_g000003 Rmu_sc0002254.1_g000001 Rmu_sc0002531.1_g000001 Rmu_sc0002717.1_g000016 Rmu_sc0002717.1_g000017 Rmu_sc0003220.1_g000024 Rmu_sc0005016.1_g000007 Rmu_sc0005608.1_g000020 Rmu_sc0010686.1_g000003 Rmu_sc0011012.1_g000011 Rmu_sc0021503.1_g000001
rosa_roxburghii Rroxscaffold_2G00082300 Rroxscaffold_2G00099190 Rroxscaffold_2G00129660 Rroxscaffold_2G00134070 Rroxscaffold_3G00236170 Rroxscaffold_5G00346460 Rroxscaffold_7G00156600 Rroxscaffold_7G00205430
rosa_rugosa Rorug01G0267800 Rorug02G0020700 Rorug02G0020700 Rorug02G0161500 Rorug02G0384900 Rorug05G0567000
rosa_samantha Rh1AG062400 Rh1AG132200 Rh1AG231500 Rh1CG126100 Rh1CG184600 Rh1CG215600 Rh1CG237400 Rh2AG213700 Rh2BG068400 Rh2BG224100 Rh2BG239600 Rh2CG069600 Rh2CG216000 Rh2CG585300 Rh2DG067600 Rh2DG219200 Rh4AG177200 Rh5AG509600 Rh5BG290500 Rh5BG328900 Rh5DG300300 Rh5DG340100 Rh6BG103200 Rh7DG421500
rosa_wichuraiana Rw1G006030 Rw1G006580 Rw2G006320 Rw5G004390 Rw5G029130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 31
AccBSI CCGCTC 1 cut(s) 142
AccII CGCG 1 cut(s) 206
AciI CCGC 2 cut(s) 35, 142
AcyI GRCGYC 1 cut(s) 32
AfiI CCNNNNNNNGG 1 cut(s) 265
AluBI AGCT 3 cut(s) 126, 232, 238
AluI AGCT 3 cut(s) 126, 232, 238
Alw26I GTCTC 1 cut(s) 212
Ama87I CYCGRG 1 cut(s) 137
AoxI GGCC 3 cut(s) 5, 97, 177
AspLEI GCGC 2 cut(s) 34, 208
AspS9I GGNCC 2 cut(s) 5, 98
AvaI CYCGRG 1 cut(s) 137
BanI GGYRCC 1 cut(s) 31
BanII GRGCYC 1 cut(s) 77
BccI CCATC 1 cut(s) 188
BcoDI GTCTC 1 cut(s) 212
BfaI CTAG 1 cut(s) 14
BfoI RGCGCY 1 cut(s) 35
BisI GCNGC 1 cut(s) 35
BlsI GCNGC 1 cut(s) 36
BmeT110I CYCGRG 1 cut(s) 137
BmgT120I GGNCC 2 cut(s) 5, 98
BmiI GGNNCC 3 cut(s) 6, 33, 76
BpmI CTGGAG 1 cut(s) 218
Bpu10I CCTNAGC 1 cut(s) 65
Bsa29I ATCGAT 1 cut(s) 171
BsaHI GRCGYC 1 cut(s) 32
BsaI GGTCTC 1 cut(s) 212
BsaJI CCNNGG 1 cut(s) 222
Bsc4I CCNNNNNNNGG 1 cut(s) 265
Bse3DI GCAATG 1 cut(s) 63
BseCI ATCGAT 1 cut(s) 171
BseDI CCNNGG 1 cut(s) 222
BseLI CCNNNNNNNGG 1 cut(s) 265
BseMI GCAATG 1 cut(s) 63
BseMII CTCAG 1 cut(s) 207
BseYI CCCAGC 1 cut(s) 78
Bsh1236I CGCG 1 cut(s) 206
BshFI GGCC 3 cut(s) 7, 99, 179
BshNI GGYRCC 1 cut(s) 31
BshVI ATCGAT 1 cut(s) 171
BsiHKCI CYCGRG 1 cut(s) 137
BslFI GGGAC 1 cut(s) 121
BslI CCNNNNNNNGG 1 cut(s) 265
BsmAI GTCTC 1 cut(s) 212
BsmFI GGGAC 1 cut(s) 121
BsnI GGCC 3 cut(s) 7, 99, 179
Bso31I GGTCTC 1 cut(s) 212
BsoBI CYCGRG 1 cut(s) 137
Bsp1286I GDGCHC 1 cut(s) 77
Bsp19I CCATGG 1 cut(s) 222
BspACI CCGC 2 cut(s) 35, 142
BspANI GGCC 3 cut(s) 7, 99, 179
BspCNI CTCAG 1 cut(s) 208
BspDI ATCGAT 1 cut(s) 171
BspFNI CGCG 1 cut(s) 206
BspLI GGNNCC 3 cut(s) 6, 33, 76
BspT107I GGYRCC 1 cut(s) 31
BspTNI GGTCTC 1 cut(s) 212
BsrBI CCGCTC 1 cut(s) 142
BsrDI GCAATG 1 cut(s) 63
BssECI CCNNGG 1 cut(s) 222
BssNI GRCGYC 1 cut(s) 32
BssT1I CCWWGG 1 cut(s) 222
BstACI GRCGYC 1 cut(s) 32
BstDEI CTNAG 3 cut(s) 65, 111, 216
BstDSI CCRYGG 1 cut(s) 222
BstENI CCTNNNNNAGG 1 cut(s) 263
BstFNI CGCG 1 cut(s) 206
BstH2I RGCGCY 1 cut(s) 35
BstHHI GCGC 2 cut(s) 34, 208
BstMAI GTCTC 1 cut(s) 212
BstUI CGCG 1 cut(s) 206
Bsu15I ATCGAT 1 cut(s) 171
BsuRI GGCC 3 cut(s) 7, 99, 179
BsuTUI ATCGAT 1 cut(s) 171
BtgI CCRYGG 1 cut(s) 222
CfoI GCGC 2 cut(s) 34, 208
Cfr13I GGNCC 2 cut(s) 5, 98
ClaI ATCGAT 1 cut(s) 171
CviAII CATG 2 cut(s) 28, 223
CviJI RGCY 8 cut(s) 7, 64, 75, 99, 126, 179, 232, 238
CviKI_1 RGCY 8 cut(s) 7, 64, 75, 99, 126, 179, 232, 238
DdeI CTNAG 3 cut(s) 65, 111, 216
DinI GGCGCC 1 cut(s) 33
Eco130I CCWWGG 1 cut(s) 222
Eco24I GRGCYC 1 cut(s) 77
Eco31I GGTCTC 1 cut(s) 212
Eco88I CYCGRG 1 cut(s) 137
EcoNI CCTNNNNNAGG 1 cut(s) 263
EcoT14I CCWWGG 1 cut(s) 222
EcoT38I GRGCYC 1 cut(s) 77
EgeI GGCGCC 1 cut(s) 33
EheI GGCGCC 1 cut(s) 33
ErhI CCWWGG 1 cut(s) 222
FaeI CATG 2 cut(s) 31, 226
FaiI YATR 3 cut(s) 29, 53, 224
FaqI GGGAC 1 cut(s) 121
FatI CATG 2 cut(s) 27, 222
Fnu4HI GCNGC 1 cut(s) 35
FriOI GRGCYC 1 cut(s) 77
Fsp4HI GCNGC 1 cut(s) 35
FspBI CTAG 1 cut(s) 14
GlaI GCGC 2 cut(s) 33, 207
GluI GCNGC 1 cut(s) 35
GsaI CCCAGC 1 cut(s) 82
GsuI CTGGAG 1 cut(s) 218
HaeII RGCGCY 1 cut(s) 35
HaeIII GGCC 3 cut(s) 7, 99, 179
HhaI GCGC 2 cut(s) 34, 208
Hin1I GRCGYC 1 cut(s) 32
Hin1II CATG 2 cut(s) 31, 226
Hin6I GCGC 2 cut(s) 32, 206
HinP1I GCGC 2 cut(s) 32, 206
HincII GTYRAC 1 cut(s) 193
HindII GTYRAC 1 cut(s) 193
HinfI GANTC 2 cut(s) 133, 157
Hpy166II GTNNAC 1 cut(s) 193
Hpy188III TCNNGA 1 cut(s) 137
Hpy8I GTNNAC 1 cut(s) 193
Hpy99I CGWCG 1 cut(s) 206
HpyAV CCTTC 1 cut(s) 142
HpyCH4IV ACGT 1 cut(s) 90
HpyF3I CTNAG 3 cut(s) 65, 111, 216
HpySE526I ACGT 1 cut(s) 90
Hsp92I GRCGYC 1 cut(s) 32
Hsp92II CATG 2 cut(s) 31, 226
HspAI GCGC 2 cut(s) 32, 206
KasI GGCGCC 1 cut(s) 31
LmnI GCTCC 3 cut(s) 80, 213, 237
LpnPI CCDG 4 cut(s) 92, 138, 228, 248
MaeI CTAG 1 cut(s) 14
MaeII ACGT 1 cut(s) 90
MbiI CCGCTC 1 cut(s) 142
MboII GAAGA 1 cut(s) 157
MhlI GDGCHC 1 cut(s) 77
Mly113I GGCGCC 1 cut(s) 32
MnlI CCTC 5 cut(s) 10, 89, 108, 169, 269
MslI CAYNNNNRTG 1 cut(s) 266
MvnI CGCG 1 cut(s) 206
NarI GGCGCC 1 cut(s) 32
NcoI CCATGG 1 cut(s) 222
NlaIII CATG 2 cut(s) 31, 226
NlaIV GGNNCC 3 cut(s) 6, 33, 76
PaeR7I CTCGAG 1 cut(s) 137
PfeI GAWTC 2 cut(s) 133, 157
PkrI GCNGC 1 cut(s) 36
PluTI GGCGCC 1 cut(s) 35
PspFI CCCAGC 1 cut(s) 78
PspN4I GGNNCC 3 cut(s) 6, 33, 76
PspPI GGNCC 2 cut(s) 5, 98
RseI CAYNNNNRTG 1 cut(s) 266
SatI GCNGC 1 cut(s) 35
Sau96I GGNCC 2 cut(s) 5, 98
SduI GDGCHC 1 cut(s) 77
SetI ASST 7 cut(s) 21, 71, 93, 128, 234, 240, 270
SfoI GGCGCC 1 cut(s) 33
Sfr274I CTCGAG 1 cut(s) 137
SlaI CTCGAG 1 cut(s) 137
SmiMI CAYNNNNRTG 1 cut(s) 266
SmlI CTYRAG 1 cut(s) 137
SmoI CTYRAG 1 cut(s) 137
SsiI CCGC 2 cut(s) 35, 142
SspDI GGCGCC 1 cut(s) 31
SspMI CTAG 1 cut(s) 14
StyI CCWWGG 1 cut(s) 222
TaiI ACGT 1 cut(s) 93
TaqI TCGA 2 cut(s) 138, 171
TauI GCSGC 1 cut(s) 37
TfiI GAWTC 2 cut(s) 133, 157
XagI CCTNNNNNAGG 1 cut(s) 263
XhoI CTCGAG 1 cut(s) 137
XspI CTAG 1 cut(s) 14
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.