Rmu_sc0001152.1_g000047

Cell Division

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001152.1
OG0000528
Physical Location & Seq
Reverse (-)
185774 .. 187314
1541 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001152.1_g000047.1.cds

Sequence Viewer

Length: 318 bp
atgttatgtatctgctcatggttcttatttataggtaaagaacatgaacttgtcatatccaatgctaggagtgatgttgatcatcttgttgaattgtgcaacggttataatttcttgcagcgggttacctcaactcagcgaatggctgagaattcagttcttgatgcacatactagtgaagggaccaagagggatttcagcactgcgattctcgagaggaagaaggcagtaaatgtcctcatcgtcgatgaggtcatcaacgatgacaactccgtcgtcactctccaccctgagaccatggagaagctagctctttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04141 ko05134 map04141 map05134
Pfam Domains
Protein Families
AAA CDC48_2 CDC48_N

Protein Analysis

105

Amino Acids

11.88

Weight (kDa)

5.06

Isoelectric Point (pI)

11.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000528)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G49650
fragaria_vesca FvH4_1g18770 FvH4_1g18770 FvH4_7g34230
malus_domestica MD01G1046900.v1.1 MD15G1305400.v1.1 MD16G1282300.v1.1
prunus_persica Prupe.6G211700_v2.0.a1 Prupe.6G211700_v2.0.a1
pyrus_communis pycom01g07280 pycom15g26860 pycom16g25190 pycom16g25200
rosa_chinensis RchiOBHm_Chr1g0351151 RchiOBHm_Chr2g0109641 RchiOBHm_Chr4g0386971 RchiOBHm_Chr4g0413031 RchiOBHm_Chr4g0429541
rosa_laevigata RLG00000007037 RLG00000009264 RLG00000009427 RLG00000015442 RLG00000017752 RLG00000017990 RLG00000022570 RLG00000028427
rosa_multiflora Rmu_sc0000031.1_g000013 Rmu_sc0000332.1_g000058 Rmu_sc0000346.1_g000014 Rmu_sc0000698.1_g000147 Rmu_sc0001152.1_g000047 Rmu_sc0001494.1_g000003 Rmu_sc0002254.1_g000001 Rmu_sc0002531.1_g000001 Rmu_sc0002717.1_g000016 Rmu_sc0002717.1_g000017 Rmu_sc0003220.1_g000024 Rmu_sc0005016.1_g000007 Rmu_sc0005608.1_g000020 Rmu_sc0010686.1_g000003 Rmu_sc0011012.1_g000011 Rmu_sc0021503.1_g000001
rosa_roxburghii Rroxscaffold_2G00082300 Rroxscaffold_2G00099190 Rroxscaffold_2G00129660 Rroxscaffold_2G00134070 Rroxscaffold_3G00236170 Rroxscaffold_5G00346460 Rroxscaffold_7G00156600 Rroxscaffold_7G00205430
rosa_rugosa Rorug01G0267800 Rorug02G0020700 Rorug02G0020700 Rorug02G0161500 Rorug02G0384900 Rorug05G0567000
rosa_samantha Rh1AG062400 Rh1AG132200 Rh1AG231500 Rh1CG126100 Rh1CG184600 Rh1CG215600 Rh1CG237400 Rh2AG213700 Rh2BG068400 Rh2BG224100 Rh2BG239600 Rh2CG069600 Rh2CG216000 Rh2CG585300 Rh2DG067600 Rh2DG219200 Rh4AG177200 Rh5AG509600 Rh5BG290500 Rh5BG328900 Rh5DG300300 Rh5DG340100 Rh6BG103200 Rh7DG421500
rosa_wichuraiana Rw1G006030 Rw1G006580 Rw2G006320 Rw5G004390 Rw5G029130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 108
AasI GACNNNNNNGTC 1 cut(s) 272
AciI CCGC 1 cut(s) 121
AcsI RAATTY 1 cut(s) 151
AfiI CCNNNNNNNGG 1 cut(s) 66
AgsI TTSAA 1 cut(s) 92
AhlI ACTAGT 1 cut(s) 173
AjuI GAANNNNNNNTTGG 2 cut(s) 179, 211
AluBI AGCT 2 cut(s) 307, 311
AluI AGCT 2 cut(s) 307, 311
Alw26I GTCTC 1 cut(s) 287
Ama87I CYCGRG 1 cut(s) 212
ApeKI GCWGC 1 cut(s) 118
ApoI RAATTY 1 cut(s) 151
AspS9I GGNCC 1 cut(s) 183
AsuNHI GCTAGC 1 cut(s) 307
AvaI CYCGRG 1 cut(s) 212
AvaII GGWCC 1 cut(s) 183
BbvI GCAGC 1 cut(s) 130
BclI TGATCA 1 cut(s) 79
BcoDI GTCTC 1 cut(s) 287
BcuI ACTAGT 1 cut(s) 173
BfaI CTAG 3 cut(s) 66, 174, 308
BisI GCNGC 1 cut(s) 119
BlsI GCNGC 1 cut(s) 120
Bme18I GGWCC 1 cut(s) 183
BmeT110I CYCGRG 1 cut(s) 212
BmgT120I GGNCC 1 cut(s) 183
BmiI GGNNCC 1 cut(s) 184
BmsI GCATC 1 cut(s) 154
BmtI GCTAGC 1 cut(s) 311
BsaBI GATNNNNATC 1 cut(s) 78
BsaI GGTCTC 1 cut(s) 287
BsaJI CCNNGG 1 cut(s) 297
Bsc4I CCNNNNNNNGG 1 cut(s) 66
Bse8I GATNNNNATC 1 cut(s) 78
BseDI CCNNGG 1 cut(s) 297
BseJI GATNNNNATC 1 cut(s) 78
BseLI CCNNNNNNNGG 1 cut(s) 66
BseMII CTCAG 3 cut(s) 138, 149, 282
BseXI GCAGC 1 cut(s) 130
BsiHKCI CYCGRG 1 cut(s) 212
BslFI GGGAC 1 cut(s) 196
BslI CCNNNNNNNGG 1 cut(s) 66
BsmAI GTCTC 1 cut(s) 287
BsmFI GGGAC 1 cut(s) 196
Bso31I GGTCTC 1 cut(s) 287
BsoBI CYCGRG 1 cut(s) 212
Bsp143I GATC 1 cut(s) 79
Bsp19I CCATGG 1 cut(s) 297
BspACI CCGC 1 cut(s) 121
BspCNI CTCAG 3 cut(s) 139, 148, 283
BspLI GGNNCC 1 cut(s) 184
BspOI GCTAGC 1 cut(s) 311
BspTNI GGTCTC 1 cut(s) 287
BssECI CCNNGG 1 cut(s) 297
BssMI GATC 1 cut(s) 79
BssT1I CCWWGG 1 cut(s) 297
Bst4CI ACNGT 1 cut(s) 104
BstC8I GCNNGC 1 cut(s) 309
BstDEI CTNAG 3 cut(s) 135, 147, 291
BstDSI CCRYGG 1 cut(s) 297
BstEII GGTNACC 1 cut(s) 124
BstKTI GATC 1 cut(s) 82
BstMAI GTCTC 1 cut(s) 287
BstMBI GATC 1 cut(s) 79
BstPI GGTNACC 1 cut(s) 124
BstV1I GCAGC 1 cut(s) 130
BtgI CCRYGG 1 cut(s) 297
BtsI GCAGTG 1 cut(s) 201
BtsIMutI CAGTG 1 cut(s) 201
Cac8I GCNNGC 1 cut(s) 309
Cfr13I GGNCC 1 cut(s) 183
CviAII CATG 3 cut(s) 18, 44, 298
CviJI RGCY 3 cut(s) 146, 307, 311
CviKI_1 RGCY 3 cut(s) 146, 307, 311
DdeI CTNAG 3 cut(s) 135, 147, 291
DpnI GATC 1 cut(s) 81
DpnII GATC 1 cut(s) 79
DrdI GACNNNNNNGTC 1 cut(s) 272
DseDI GACNNNNNNGTC 1 cut(s) 272
Eco130I CCWWGG 1 cut(s) 297
Eco31I GGTCTC 1 cut(s) 287
Eco47I GGWCC 1 cut(s) 183
Eco88I CYCGRG 1 cut(s) 212
Eco91I GGTNACC 1 cut(s) 124
EcoO65I GGTNACC 1 cut(s) 124
EcoRI GAATTC 1 cut(s) 151
EcoT14I CCWWGG 1 cut(s) 297
ErhI CCWWGG 1 cut(s) 297
FaeI CATG 3 cut(s) 21, 47, 301
FaiI YATR 8 cut(s) 7, 19, 32, 45, 56, 108, 171, 299
FaqI GGGAC 1 cut(s) 196
FatI CATG 3 cut(s) 17, 43, 297
FauI CCCGC 1 cut(s) 114
FbaI TGATCA 1 cut(s) 79
Fnu4HI GCNGC 1 cut(s) 119
Fsp4HI GCNGC 1 cut(s) 119
FspBI CTAG 3 cut(s) 66, 174, 308
GluI GCNGC 1 cut(s) 119
Hin1II CATG 3 cut(s) 21, 47, 301
HinfI GANTC 1 cut(s) 208
Hpy188III TCNNGA 3 cut(s) 161, 212, 214
Hpy99I CGWCG 2 cut(s) 248, 278
HpyAV CCTTC 2 cut(s) 173, 217
HpyCH4III ACNGT 1 cut(s) 104
HpyCH4V TGCA 3 cut(s) 99, 118, 167
HpyF3I CTNAG 3 cut(s) 135, 147, 291
Hsp92II CATG 3 cut(s) 21, 47, 301
Ksp22I TGATCA 1 cut(s) 79
Kzo9I GATC 1 cut(s) 79
LpnPI CCDG 1 cut(s) 303
Lsp1109I GCAGC 1 cut(s) 130
LweI GCATC 1 cut(s) 154
MaeI CTAG 3 cut(s) 66, 174, 308
MaeIII GTNAC 2 cut(s) 124, 277
MalI GATC 1 cut(s) 81
MboI GATC 1 cut(s) 79
MboII GAAGA 1 cut(s) 232
MluCI AATT 3 cut(s) 92, 109, 151
MnlI CCTC 5 cut(s) 139, 183, 210, 244, 248
MslI CAYNNNNRTG 1 cut(s) 174
MspA1I CMGCKG 1 cut(s) 121
NcoI CCATGG 1 cut(s) 297
NdeII GATC 1 cut(s) 79
NheI GCTAGC 1 cut(s) 307
NlaIII CATG 3 cut(s) 21, 47, 301
NlaIV GGNNCC 1 cut(s) 184
NmuCI GTSAC 1 cut(s) 277
PaeR7I CTCGAG 1 cut(s) 212
PfeI GAWTC 1 cut(s) 208
PkrI GCNGC 1 cut(s) 120
PsiI TTATAA 1 cut(s) 108
PspEI GGTNACC 1 cut(s) 124
PspN4I GGNNCC 1 cut(s) 184
PspPI GGNCC 1 cut(s) 183
RseI CAYNNNNRTG 1 cut(s) 174
SatI GCNGC 1 cut(s) 119
Sau3AI GATC 1 cut(s) 79
Sau96I GGNCC 1 cut(s) 183
SetI ASST 5 cut(s) 37, 131, 255, 309, 313
SfaNI GCATC 1 cut(s) 154
Sfr274I CTCGAG 1 cut(s) 212
SinI GGWCC 1 cut(s) 183
SlaI CTCGAG 1 cut(s) 212
SmiMI CAYNNNNRTG 1 cut(s) 174
SmlI CTYRAG 1 cut(s) 212
SmoI CTYRAG 1 cut(s) 212
SpeI ACTAGT 1 cut(s) 173
Sse9I AATT 3 cut(s) 92, 109, 151
SsiI CCGC 1 cut(s) 121
SspMI CTAG 3 cut(s) 66, 174, 308
StyI CCWWGG 1 cut(s) 297
TaaI ACNGT 1 cut(s) 104
TaqI TCGA 2 cut(s) 213, 246
TasI AATT 3 cut(s) 92, 109, 151
TfiI GAWTC 1 cut(s) 208
TscAI CASTG 1 cut(s) 208
TseFI GTSAC 1 cut(s) 277
TseI GCWGC 1 cut(s) 118
Tsp45I GTSAC 1 cut(s) 277
TspDTI ATGAA 1 cut(s) 60
TspGWI ACGGA 1 cut(s) 262
TspRI CASTG 1 cut(s) 208
VpaK11BI GGWCC 1 cut(s) 183
XapI RAATTY 1 cut(s) 151
XhoI CTCGAG 1 cut(s) 212
XspI CTAG 3 cut(s) 66, 174, 308
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.