Rh1CG215600
ERF Family

Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
Physical Location & Seq
Reverse (-)
46433781 .. 46440230
6450 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG215600.1

Sequence Viewer

Length: 708 bp
ATGTCCTCGTCGTCGATGAGGCCATCTACGATGACAACTCCGTCGTCACTCTCCACCCTGAGACCATGGAGAAGCTTTAGCTCTTTAGGGGCGACACAATCCTCATTAAGAAACAAAGGTGAGATACAAAACAATGAGACAGAAATGATCATATCATCATCCTCATGTGGACGGACTACTTGCGTCAAATGGTGGCGGCAAGCAGAGAAGATTGAGGTGCAATCATTAGAAGAGCTTCCAAAGCAGCTATTCCTGGAAATATATGAGCTTTCTCAAGCAAAGGATGTCTACACAAAATGCATATCGTCCGTGATCTCTGGGGTTGTTCATGGTCTCAATGCAACTGTGTTTGTGTATGGTTCTACCGGAAGTGGTAAAACATATACAATGGTGGGGACACAAAATGATCCCGGGCTCATGGTTCTCAGTTTGCATACAATATTTGATCTGATAAAAAAGGACAAGAGCTCTGATGAATTTGAAGTTACCTGCTCCTATCTTGAAGTCTATAACGAAGTTATCTATGATTTGCTTGAAAAGTCATCCGGCCATTTGGAGGATCCAGAGCAAGGAATCATTGTTGCTGGCCTCAGGTGTATAAAGGTTCAGTCAGCTGATAAGATCCTTGAACTCTTAAACGTGGGGAACAGCCGACGGAAAACTGAAAGCACGGAGGCTAATGCAACATCTTCTCGATTTACCCACTAA

Protein Analysis

235

Amino Acids

26.04

Weight (kDa)

5.87

Isoelectric Point (pI)

47.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Kinesin PF00225 90 - 232 2.5e-46 Kinesin motor domain
Microtub_bd PF16796 99 - 178 7e-16 Microtubule binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000528)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G49650
fragaria_vesca FvH4_1g18770 FvH4_1g18770 FvH4_7g34230
malus_domestica MD01G1046900.v1.1 MD15G1305400.v1.1 MD16G1282300.v1.1
prunus_persica Prupe.6G211700_v2.0.a1 Prupe.6G211700_v2.0.a1
pyrus_communis pycom01g07280 pycom15g26860 pycom16g25190 pycom16g25200
rosa_chinensis RchiOBHm_Chr1g0351151 RchiOBHm_Chr2g0109641 RchiOBHm_Chr4g0386971 RchiOBHm_Chr4g0413031 RchiOBHm_Chr4g0429541
rosa_laevigata RLG00000007037 RLG00000009264 RLG00000009427 RLG00000015442 RLG00000017752 RLG00000017990 RLG00000022570 RLG00000028427
rosa_multiflora Rmu_sc0000031.1_g000013 Rmu_sc0000332.1_g000058 Rmu_sc0000346.1_g000014 Rmu_sc0000698.1_g000147 Rmu_sc0001152.1_g000047 Rmu_sc0001494.1_g000003 Rmu_sc0002254.1_g000001 Rmu_sc0002531.1_g000001 Rmu_sc0002717.1_g000016 Rmu_sc0002717.1_g000017 Rmu_sc0003220.1_g000024 Rmu_sc0005016.1_g000007 Rmu_sc0005608.1_g000020 Rmu_sc0010686.1_g000003 Rmu_sc0011012.1_g000011 Rmu_sc0021503.1_g000001
rosa_roxburghii Rroxscaffold_2G00082300 Rroxscaffold_2G00099190 Rroxscaffold_2G00129660 Rroxscaffold_2G00134070 Rroxscaffold_3G00236170 Rroxscaffold_5G00346460 Rroxscaffold_7G00156600 Rroxscaffold_7G00205430
rosa_rugosa Rorug01G0267800 Rorug02G0020700 Rorug02G0020700 Rorug02G0161500 Rorug02G0384900 Rorug05G0567000
rosa_samantha Rh1AG062400 Rh1AG132200 Rh1AG231500 Rh1CG126100 Rh1CG184600 Rh1CG215600 Rh1CG237400 Rh2AG213700 Rh2BG068400 Rh2BG224100 Rh2BG239600 Rh2CG069600 Rh2CG216000 Rh2CG585300 Rh2DG067600 Rh2DG219200 Rh4AG177200 Rh5AG509600 Rh5BG290500 Rh5BG328900 Rh5DG300300 Rh5DG340100 Rh6BG103200 Rh7DG421500
rosa_wichuraiana Rw1G006030 Rw1G006580 Rw2G006320 Rw5G004390 Rw5G029130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 40
Acc36I ACCTGC 1 cut(s) 497
AccI GTMKAC 1 cut(s) 288
AciI CCGC 1 cut(s) 196
AclWI GGATC 4 cut(s) 401, 554, 567, 616
AcoI YGGCCR 1 cut(s) 547
AcsI RAATTY 1 cut(s) 476
AfiI CCNNNNNNNGG 2 cut(s) 556, 569
AgsI TTSAA 4 cut(s) 482, 503, 536, 629
AjnI CCWGG 1 cut(s) 252
AluBI AGCT 7 cut(s) 75, 81, 235, 247, 268, 468, 614
AluI AGCT 7 cut(s) 75, 81, 235, 247, 268, 468, 614
Alw21I GWGCWC 1 cut(s) 470
Alw26I GTCTC 3 cut(s) 55, 131, 338
AlwI GGATC 4 cut(s) 401, 554, 567, 616
Ama87I CYCGRG 1 cut(s) 410
AoxI GGCC 3 cut(s) 20, 547, 586
ApeKI GCWGC 1 cut(s) 244
ApoI RAATTY 1 cut(s) 476
Asp700I GAANNNNTTC 1 cut(s) 234
AsuC2I CCSGG 2 cut(s) 411, 412
AsuHPI GGTGA 1 cut(s) 131
AvaI CYCGRG 1 cut(s) 410
AxyI CCTNAGG 1 cut(s) 590
BamHI GGATCC 1 cut(s) 559
BanII GRGCYC 2 cut(s) 417, 470
Bbv12I GWGCWC 1 cut(s) 470
BbvI GCAGC 1 cut(s) 256
BccI CCATC 1 cut(s) 31
BciT130I CCWGG 1 cut(s) 254
BclI TGATCA 1 cut(s) 147
BcnI CCSGG 2 cut(s) 411, 412
BcoDI GTCTC 3 cut(s) 55, 131, 338
BfuAI ACCTGC 1 cut(s) 497
BisI GCNGC 2 cut(s) 197, 245
BlsI GCNGC 2 cut(s) 198, 246
Bme1390I CCNGG 3 cut(s) 254, 411, 412
BmeT110I CYCGRG 1 cut(s) 410
BmiI GGNNCC 1 cut(s) 561
BmrFI CCNGG 3 cut(s) 254, 411, 412
BpuEI CTTGAG 1 cut(s) 258
BpuMI CCSGG 2 cut(s) 411, 412
BsaI GGTCTC 2 cut(s) 55, 338
BsaJI CCNNGG 2 cut(s) 65, 410
BsaWI WCCGGW 1 cut(s) 365
Bsc4I CCNNNNNNNGG 2 cut(s) 556, 569
Bse21I CCTNAGG 1 cut(s) 590
BseBI CCWGG 1 cut(s) 254
BseDI CCNNGG 2 cut(s) 65, 410
BseGI GGATG 3 cut(s) 158, 289, 542
BseLI CCNNNNNNNGG 2 cut(s) 556, 569
BseMII CTCAG 3 cut(s) 50, 439, 604
BseXI GCAGC 1 cut(s) 256
BshFI GGCC 3 cut(s) 22, 549, 588
BsiHKAI GWGCWC 1 cut(s) 470
BsiHKCI CYCGRG 1 cut(s) 410
BsiSI CCGG 3 cut(s) 366, 411, 546
BslFI GGGAC 1 cut(s) 409
BslI CCNNNNNNNGG 2 cut(s) 556, 569
BsmAI GTCTC 3 cut(s) 55, 131, 338
BsmFI GGGAC 1 cut(s) 409
BsnI GGCC 3 cut(s) 22, 549, 588
Bso31I GGTCTC 2 cut(s) 55, 338
BsoBI CYCGRG 1 cut(s) 410
Bsp1286I GDGCHC 2 cut(s) 417, 470
Bsp143I GATC 6 cut(s) 147, 312, 406, 445, 559, 621
Bsp19I CCATGG 1 cut(s) 65
BspACI CCGC 1 cut(s) 196
BspANI GGCC 3 cut(s) 22, 549, 588
BspCNI CTCAG 3 cut(s) 51, 438, 603
BspLI GGNNCC 1 cut(s) 561
BspMI ACCTGC 1 cut(s) 497
BspPI GGATC 4 cut(s) 401, 554, 567, 616
BspQI GCTCTTC 1 cut(s) 225
BspTNI GGTCTC 2 cut(s) 55, 338
BssECI CCNNGG 2 cut(s) 65, 410
BssMI GATC 6 cut(s) 147, 312, 406, 445, 559, 621
BssT1I CCWWGG 1 cut(s) 65
Bst2UI CCWGG 1 cut(s) 254
Bst4CI ACNGT 1 cut(s) 346
Bst6I CTCTTC 1 cut(s) 225
BstC8I GCNNGC 2 cut(s) 201, 586
BstDEI CTNAG 3 cut(s) 59, 425, 590
BstDSI CCRYGG 1 cut(s) 65
BstF5I GGATG 3 cut(s) 158, 289, 542
BstKTI GATC 6 cut(s) 150, 315, 409, 448, 562, 624
BstMAI GTCTC 3 cut(s) 55, 131, 338
BstMBI GATC 6 cut(s) 147, 312, 406, 445, 559, 621
BstMWI GCNNNNNNNGC 1 cut(s) 241
BstNI CCWGG 1 cut(s) 254
BstSCI CCNGG 3 cut(s) 252, 409, 410
BstV1I GCAGC 1 cut(s) 256
BstX2I RGATCY 2 cut(s) 559, 621
BstYI RGATCY 2 cut(s) 559, 621
Bsu36I CCTNAGG 1 cut(s) 590
BsuRI GGCC 3 cut(s) 22, 549, 588
BtgI CCRYGG 1 cut(s) 65
BtsCI GGATG 3 cut(s) 158, 289, 542
BveI ACCTGC 1 cut(s) 497
Cac8I GCNNGC 2 cut(s) 201, 586
Cfr9I CCCGGG 1 cut(s) 410
CseI GACGC 1 cut(s) 172
CviAII CATG 4 cut(s) 66, 165, 329, 418
DdeI CTNAG 3 cut(s) 59, 425, 590
DpnI GATC 6 cut(s) 149, 314, 408, 447, 561, 623
DpnII GATC 6 cut(s) 147, 312, 406, 445, 559, 621
DrdI GACNNNNNNGTC 1 cut(s) 40
DseDI GACNNNNNNGTC 1 cut(s) 40
EaeI YGGCCR 1 cut(s) 547
Eam1104I CTCTTC 1 cut(s) 225
EarI CTCTTC 1 cut(s) 225
Ecl136II GAGCTC 1 cut(s) 468
Eco130I CCWWGG 1 cut(s) 65
Eco24I GRGCYC 2 cut(s) 417, 470
Eco31I GGTCTC 2 cut(s) 55, 338
Eco53kI GAGCTC 1 cut(s) 468
Eco81I CCTNAGG 1 cut(s) 590
Eco88I CYCGRG 1 cut(s) 410
EcoICRI GAGCTC 1 cut(s) 468
EcoRII CCWGG 1 cut(s) 252
EcoT14I CCWWGG 1 cut(s) 65
EcoT22I ATGCAT 1 cut(s) 302
EcoT38I GRGCYC 2 cut(s) 417, 470
ErhI CCWWGG 1 cut(s) 65
FaeI CATG 4 cut(s) 69, 168, 332, 421
FaqI GGGAC 1 cut(s) 409
FatI CATG 4 cut(s) 65, 164, 328, 417
FbaI TGATCA 1 cut(s) 147
FblI GTMKAC 1 cut(s) 288
Fnu4HI GCNGC 2 cut(s) 197, 245
FokI GGATG 3 cut(s) 145, 296, 529
FriOI GRGCYC 2 cut(s) 417, 470
Fsp4HI GCNGC 2 cut(s) 197, 245
GluI GCNGC 2 cut(s) 197, 245
HaeIII GGCC 3 cut(s) 22, 549, 588
HapII CCGG 3 cut(s) 366, 411, 546
HgaI GACGC 1 cut(s) 172
Hin1II CATG 4 cut(s) 69, 168, 332, 421
HindIII AAGCTT 1 cut(s) 73
HinfI GANTC 1 cut(s) 573
HpaII CCGG 3 cut(s) 366, 411, 546
HphI GGTGA 1 cut(s) 131
Hpy166II GTNNAC 2 cut(s) 170, 289
Hpy188I TCNGA 2 cut(s) 450, 472
Hpy188III TCNNGA 3 cut(s) 500, 563, 693
Hpy8I GTNNAC 2 cut(s) 170, 289
Hpy99I CGWCG 4 cut(s) 13, 16, 46, 657
HpyCH4III ACNGT 1 cut(s) 346
HpyCH4IV ACGT 1 cut(s) 639
HpyCH4V TGCA 5 cut(s) 220, 300, 341, 433, 683
HpyF10VI GCNNNNNNNGC 1 cut(s) 241
HpyF3I CTNAG 3 cut(s) 59, 425, 590
HpySE526I ACGT 1 cut(s) 639
Hsp92II CATG 4 cut(s) 69, 168, 332, 421
Ksp22I TGATCA 1 cut(s) 147
Kzo9I GATC 6 cut(s) 147, 312, 406, 445, 559, 621
LguI GCTCTTC 1 cut(s) 225
LmnI GCTCC 1 cut(s) 497
Lsp1109I GCAGC 1 cut(s) 256
MaeII ACGT 1 cut(s) 639
MaeIII GTNAC 2 cut(s) 45, 484
MalI GATC 6 cut(s) 149, 314, 408, 447, 561, 623
MboI GATC 6 cut(s) 147, 312, 406, 445, 559, 621
MboII GAAGA 3 cut(s) 220, 242, 681
MflI RGATCY 2 cut(s) 559, 621
MhlI GDGCHC 2 cut(s) 417, 470
MluCI AATT 1 cut(s) 476
MnlI CCTC 8 cut(s) 12, 16, 112, 172, 208, 550, 599, 667
Mph1103I ATGCAT 1 cut(s) 302
MroXI GAANNNNTTC 1 cut(s) 234
MseI TTAA 2 cut(s) 107, 635
MslI CAYNNNNRTG 1 cut(s) 163
MspA1I CMGCKG 1 cut(s) 614
MspI CCGG 3 cut(s) 366, 411, 546
MspR9I CCNGG 3 cut(s) 254, 411, 412
MvaI CCWGG 1 cut(s) 254
MwoI GCNNNNNNNGC 1 cut(s) 241
NciI CCSGG 2 cut(s) 411, 412
NcoI CCATGG 1 cut(s) 65
NdeII GATC 6 cut(s) 147, 312, 406, 445, 559, 621
NlaIII CATG 4 cut(s) 69, 168, 332, 421
NlaIV GGNNCC 1 cut(s) 561
NmuCI GTSAC 1 cut(s) 45
NsiI ATGCAT 1 cut(s) 302
PciSI GCTCTTC 1 cut(s) 225
PdmI GAANNNNTTC 1 cut(s) 234
PfeI GAWTC 1 cut(s) 573
PfoI TCCNGGA 1 cut(s) 252
PkrI GCNGC 2 cut(s) 198, 246
Psp124BI GAGCTC 1 cut(s) 470
Psp6I CCWGG 1 cut(s) 252
PspGI CCWGG 1 cut(s) 252
PspN4I GGNNCC 1 cut(s) 561
PsuI RGATCY 2 cut(s) 559, 621
PvuII CAGCTG 1 cut(s) 614
RseI CAYNNNNRTG 1 cut(s) 163
SacI GAGCTC 1 cut(s) 470
SapI GCTCTTC 1 cut(s) 225
SaqAI TTAA 2 cut(s) 107, 635
SatI GCNGC 2 cut(s) 197, 245
Sau3AI GATC 6 cut(s) 147, 312, 406, 445, 559, 621
ScrFI CCNGG 3 cut(s) 254, 411, 412
SduI GDGCHC 2 cut(s) 417, 470
SmaI CCCGGG 1 cut(s) 412
SmiMI CAYNNNNRTG 1 cut(s) 163
SmlI CTYRAG 1 cut(s) 273
SmoI CTYRAG 1 cut(s) 273
Sse9I AATT 1 cut(s) 476
SsiI CCGC 1 cut(s) 196
SspI AATATT 1 cut(s) 441
SstI GAGCTC 1 cut(s) 470
StyD4I CCNGG 3 cut(s) 252, 409, 410
StyI CCWWGG 1 cut(s) 65
TaaI ACNGT 1 cut(s) 346
TaiI ACGT 1 cut(s) 642
TaqI TCGA 2 cut(s) 14, 694
TasI AATT 1 cut(s) 476
TauI GCSGC 1 cut(s) 199
TfiI GAWTC 1 cut(s) 573
Tru1I TTAA 2 cut(s) 107, 635
Tru9I TTAA 2 cut(s) 107, 635
TseFI GTSAC 1 cut(s) 45
TseI GCWGC 1 cut(s) 244
Tsp45I GTSAC 1 cut(s) 45
TspDTI ATGAA 2 cut(s) 317, 489
TspGWI ACGGA 5 cut(s) 30, 187, 298, 670, 686
TspMI CCCGGG 1 cut(s) 410
XapI RAATTY 1 cut(s) 476
XmaI CCCGGG 1 cut(s) 410
XmiI GTMKAC 1 cut(s) 288
XmnI GAANNNNTTC 1 cut(s) 234
Zsp2I ATGCAT 1 cut(s) 302
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.