Rmu_sc0011012.1_g000011

Cell Division

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0011012.1
OG0000528
Physical Location & Seq
Forward (+)
44013 .. 47470
3458 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0011012.1_g000011.1.cds

Sequence Viewer

Length: 348 bp
atgaggacggcagcagcggcgtggactttggtccggtgcttgagaagcaaatcgctcttcaatatttcgacgggagaagcgacagtgaaggaggagtcgcagggattgggtttaaggctagtgagggatcaaagagatttcaacactgcgtttctggagcgcaaggaggctgcgaatcggcttgtggtggaagaagccatcgactattgcaactcgatcttcgtgcttcaccccgagaccatggagagctccagcgacaacacaatcaggtgtacatggcatgcatttgacaaggtcatctgtaaagctggttcgaggttaagaaaagtgctaagcaagggcagctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04141 ko05134 map04141 map05134
Pfam Domains
Protein Families
AAA CDC48_2 CDC48_N

Protein Analysis

115

Amino Acids

12.95

Weight (kDa)

9.07

Isoelectric Point (pI)

37.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000528)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G49650
fragaria_vesca FvH4_1g18770 FvH4_1g18770 FvH4_7g34230
malus_domestica MD01G1046900.v1.1 MD15G1305400.v1.1 MD16G1282300.v1.1
prunus_persica Prupe.6G211700_v2.0.a1 Prupe.6G211700_v2.0.a1
pyrus_communis pycom01g07280 pycom15g26860 pycom16g25190 pycom16g25200
rosa_chinensis RchiOBHm_Chr1g0351151 RchiOBHm_Chr2g0109641 RchiOBHm_Chr4g0386971 RchiOBHm_Chr4g0413031 RchiOBHm_Chr4g0429541
rosa_laevigata RLG00000007037 RLG00000009264 RLG00000009427 RLG00000015442 RLG00000017752 RLG00000017990 RLG00000022570 RLG00000028427
rosa_multiflora Rmu_sc0000031.1_g000013 Rmu_sc0000332.1_g000058 Rmu_sc0000346.1_g000014 Rmu_sc0000698.1_g000147 Rmu_sc0001152.1_g000047 Rmu_sc0001494.1_g000003 Rmu_sc0002254.1_g000001 Rmu_sc0002531.1_g000001 Rmu_sc0002717.1_g000016 Rmu_sc0002717.1_g000017 Rmu_sc0003220.1_g000024 Rmu_sc0005016.1_g000007 Rmu_sc0005608.1_g000020 Rmu_sc0010686.1_g000003 Rmu_sc0011012.1_g000011 Rmu_sc0021503.1_g000001
rosa_roxburghii Rroxscaffold_2G00082300 Rroxscaffold_2G00099190 Rroxscaffold_2G00129660 Rroxscaffold_2G00134070 Rroxscaffold_3G00236170 Rroxscaffold_5G00346460 Rroxscaffold_7G00156600 Rroxscaffold_7G00205430
rosa_rugosa Rorug01G0267800 Rorug02G0020700 Rorug02G0020700 Rorug02G0161500 Rorug02G0384900 Rorug05G0567000
rosa_samantha Rh1AG062400 Rh1AG132200 Rh1AG231500 Rh1CG126100 Rh1CG184600 Rh1CG215600 Rh1CG237400 Rh2AG213700 Rh2BG068400 Rh2BG224100 Rh2BG239600 Rh2CG069600 Rh2CG216000 Rh2CG585300 Rh2DG067600 Rh2DG219200 Rh4AG177200 Rh5AG509600 Rh5BG290500 Rh5BG328900 Rh5DG300300 Rh5DG340100 Rh6BG103200 Rh7DG421500
rosa_wichuraiana Rw1G006030 Rw1G006580 Rw2G006320 Rw5G004390 Rw5G029130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 17
AclWI GGATC 1 cut(s) 135
AfaI GTAC 1 cut(s) 274
AgsI TTSAA 2 cut(s) 61, 142
AluBI AGCT 3 cut(s) 249, 308, 345
AluI AGCT 3 cut(s) 249, 308, 345
Alw21I GWGCWC 1 cut(s) 251
Alw26I GTCTC 1 cut(s) 230
AlwI GGATC 1 cut(s) 135
Ama87I CYCGRG 1 cut(s) 233
ApeKI GCWGC 4 cut(s) 11, 14, 170, 342
AspLEI GCGC 1 cut(s) 162
AspS9I GGNCC 1 cut(s) 31
AsuHPI GGTGA 1 cut(s) 221
AvaI CYCGRG 1 cut(s) 233
AvaII GGWCC 1 cut(s) 31
BanII GRGCYC 1 cut(s) 251
Bbv12I GWGCWC 1 cut(s) 251
BbvI GCAGC 3 cut(s) 23, 26, 157
BccI CCATC 1 cut(s) 206
BceAI ACGGC 1 cut(s) 24
BcgI CGANNNNNNTGC 2 cut(s) 205, 239
BcoDI GTCTC 1 cut(s) 230
BfaI CTAG 1 cut(s) 119
BisI GCNGC 5 cut(s) 12, 15, 18, 171, 343
BlpI GCTNAGC 1 cut(s) 332
BlsI GCNGC 5 cut(s) 13, 16, 19, 172, 344
Bme18I GGWCC 1 cut(s) 31
BmeT110I CYCGRG 1 cut(s) 233
BmgT120I GGNCC 1 cut(s) 31
BoxI GACNNNNGTC 1 cut(s) 29
BpmI CTGGAG 2 cut(s) 176, 235
Bpu1102I GCTNAGC 1 cut(s) 332
BpuEI CTTGAG 1 cut(s) 61
BsaI GGTCTC 1 cut(s) 230
BsaJI CCNNGG 1 cut(s) 240
BsaWI WCCGGW 1 cut(s) 33
BseDI CCNNGG 1 cut(s) 240
BseRI GAGGAG 1 cut(s) 107
BseXI GCAGC 3 cut(s) 23, 26, 157
BsiHKAI GWGCWC 1 cut(s) 251
BsiHKCI CYCGRG 1 cut(s) 233
BsiSI CCGG 1 cut(s) 34
BsmAI GTCTC 1 cut(s) 230
Bso31I GGTCTC 1 cut(s) 230
BsoBI CYCGRG 1 cut(s) 233
Bsp1286I GDGCHC 1 cut(s) 251
Bsp1407I TGTACA 1 cut(s) 272
Bsp143I GATC 2 cut(s) 127, 216
Bsp1720I GCTNAGC 1 cut(s) 332
Bsp19I CCATGG 1 cut(s) 240
BspACI CCGC 1 cut(s) 17
BspPI GGATC 1 cut(s) 135
BspQI GCTCTTC 1 cut(s) 62
BspTNI GGTCTC 1 cut(s) 230
BsrGI TGTACA 1 cut(s) 272
BssECI CCNNGG 1 cut(s) 240
BssMI GATC 2 cut(s) 127, 216
BssT1I CCWWGG 1 cut(s) 240
Bst4CI ACNGT 1 cut(s) 85
Bst6I CTCTTC 1 cut(s) 62
BstAUI TGTACA 1 cut(s) 272
BstC8I GCNNGC 1 cut(s) 282
BstDEI CTNAG 1 cut(s) 332
BstDSI CCRYGG 1 cut(s) 240
BstHHI GCGC 1 cut(s) 162
BstKTI GATC 2 cut(s) 130, 219
BstMAI GTCTC 1 cut(s) 230
BstMBI GATC 2 cut(s) 127, 216
BstMWI GCNNNNNNNGC 3 cut(s) 17, 45, 342
BstNSI RCATGY 1 cut(s) 284
BstPAI GACNNNNGTC 1 cut(s) 29
BstV1I GCAGC 3 cut(s) 23, 26, 157
BtgI CCRYGG 1 cut(s) 240
BtsI GCAGTG 1 cut(s) 144
BtsIMutI CAGTG 2 cut(s) 90, 144
Cac8I GCNNGC 1 cut(s) 282
CfoI GCGC 1 cut(s) 162
Cfr13I GGNCC 1 cut(s) 31
Csp6I GTAC 1 cut(s) 273
CviAII CATG 3 cut(s) 241, 276, 281
CviJI RGCY 7 cut(s) 118, 170, 181, 197, 249, 308, 345
CviKI_1 RGCY 7 cut(s) 118, 170, 181, 197, 249, 308, 345
CviQI GTAC 1 cut(s) 273
DdeI CTNAG 1 cut(s) 332
DpnI GATC 2 cut(s) 129, 218
DpnII GATC 2 cut(s) 127, 216
Eam1104I CTCTTC 1 cut(s) 62
EarI CTCTTC 1 cut(s) 62
Ecl136II GAGCTC 1 cut(s) 249
Eco130I CCWWGG 1 cut(s) 240
Eco24I GRGCYC 1 cut(s) 251
Eco31I GGTCTC 1 cut(s) 230
Eco47I GGWCC 1 cut(s) 31
Eco53kI GAGCTC 1 cut(s) 249
Eco88I CYCGRG 1 cut(s) 233
EcoICRI GAGCTC 1 cut(s) 249
EcoT14I CCWWGG 1 cut(s) 240
EcoT22I ATGCAT 1 cut(s) 286
EcoT38I GRGCYC 1 cut(s) 251
ErhI CCWWGG 1 cut(s) 240
FaeI CATG 3 cut(s) 244, 279, 284
FaiI YATR 3 cut(s) 242, 277, 282
FatI CATG 3 cut(s) 240, 275, 280
Fnu4HI GCNGC 5 cut(s) 12, 15, 18, 171, 343
FriOI GRGCYC 1 cut(s) 251
Fsp4HI GCNGC 5 cut(s) 12, 15, 18, 171, 343
FspBI CTAG 1 cut(s) 119
GlaI GCGC 1 cut(s) 161
GluI GCNGC 5 cut(s) 12, 15, 18, 171, 343
GsuI CTGGAG 2 cut(s) 176, 235
HapII CCGG 1 cut(s) 34
HhaI GCGC 1 cut(s) 162
Hin1II CATG 3 cut(s) 244, 279, 284
Hin6I GCGC 1 cut(s) 160
HinP1I GCGC 1 cut(s) 160
HinfI GANTC 2 cut(s) 95, 175
HpaII CCGG 1 cut(s) 34
HphI GGTGA 1 cut(s) 221
Hpy166II GTNNAC 2 cut(s) 24, 273
Hpy188III TCNNGA 1 cut(s) 155
Hpy8I GTNNAC 2 cut(s) 24, 273
Hpy99I CGWCG 1 cut(s) 73
HpyAV CCTTC 1 cut(s) 82
HpyCH4III ACNGT 1 cut(s) 85
HpyCH4V TGCA 2 cut(s) 210, 284
HpyF10VI GCNNNNNNNGC 3 cut(s) 17, 45, 342
HpyF3I CTNAG 1 cut(s) 332
Hsp92II CATG 3 cut(s) 244, 279, 284
HspAI GCGC 1 cut(s) 160
Kzo9I GATC 2 cut(s) 127, 216
LguI GCTCTTC 1 cut(s) 62
LmnI GCTCC 2 cut(s) 157, 254
LpnPI CCDG 6 cut(s) 47, 86, 140, 253, 265, 294
Lsp1109I GCAGC 3 cut(s) 23, 26, 157
MaeI CTAG 1 cut(s) 119
MalI GATC 2 cut(s) 129, 218
MboI GATC 2 cut(s) 127, 216
MboII GAAGA 3 cut(s) 49, 203, 211
MhlI GDGCHC 1 cut(s) 251
MlyI GAGTC 1 cut(s) 104
MnlI CCTC 4 cut(s) 85, 117, 160, 309
Mph1103I ATGCAT 1 cut(s) 286
MseI TTAA 2 cut(s) 113, 320
MspA1I CMGCKG 2 cut(s) 17, 345
MspI CCGG 1 cut(s) 34
MwoI GCNNNNNNNGC 3 cut(s) 17, 45, 342
NcoI CCATGG 1 cut(s) 240
NdeII GATC 2 cut(s) 127, 216
NlaIII CATG 3 cut(s) 244, 279, 284
NsiI ATGCAT 1 cut(s) 286
NspI RCATGY 1 cut(s) 284
PaeI GCATGC 1 cut(s) 284
PciSI GCTCTTC 1 cut(s) 62
PcsI WCGNNNNNNNCGW 1 cut(s) 77
PfeI GAWTC 1 cut(s) 175
PflFI GACNNNGTC 1 cut(s) 293
PkrI GCNGC 5 cut(s) 13, 16, 19, 172, 344
PleI GAGTC 1 cut(s) 103
PpsI GAGTC 1 cut(s) 103
PshAI GACNNNNGTC 1 cut(s) 29
Psp124BI GAGCTC 1 cut(s) 251
PspPI GGNCC 1 cut(s) 31
PsrI GAACNNNNNNTAC 2 cut(s) 295, 327
PsyI GACNNNGTC 1 cut(s) 293
PvuII CAGCTG 1 cut(s) 345
RsaI GTAC 1 cut(s) 274
RsaNI GTAC 1 cut(s) 273
SacI GAGCTC 1 cut(s) 251
SapI GCTCTTC 1 cut(s) 62
SaqAI TTAA 2 cut(s) 113, 320
SatI GCNGC 5 cut(s) 12, 15, 18, 171, 343
Sau3AI GATC 2 cut(s) 127, 216
Sau96I GGNCC 1 cut(s) 31
SchI GAGTC 1 cut(s) 104
SduI GDGCHC 1 cut(s) 251
SetI ASST 6 cut(s) 251, 272, 297, 310, 320, 347
SinI GGWCC 1 cut(s) 31
SmlI CTYRAG 1 cut(s) 40
SmoI CTYRAG 1 cut(s) 40
SphI GCATGC 1 cut(s) 284
SsiI CCGC 1 cut(s) 17
SspI AATATT 1 cut(s) 64
SspMI CTAG 1 cut(s) 119
SstI GAGCTC 1 cut(s) 251
StyI CCWWGG 1 cut(s) 240
TaaI ACNGT 1 cut(s) 85
TaqI TCGA 4 cut(s) 68, 201, 215, 314
TatI WGTACW 1 cut(s) 272
TauI GCSGC 1 cut(s) 20
TfiI GAWTC 1 cut(s) 175
Tru1I TTAA 2 cut(s) 113, 320
Tru9I TTAA 2 cut(s) 113, 320
TscAI CASTG 2 cut(s) 90, 151
TseI GCWGC 4 cut(s) 11, 14, 170, 342
TspRI CASTG 2 cut(s) 90, 151
Tth111I GACNNNGTC 1 cut(s) 293
VpaK11BI GGWCC 1 cut(s) 31
XceI RCATGY 1 cut(s) 284
XspI CTAG 1 cut(s) 119
Zsp2I ATGCAT 1 cut(s) 286
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.