Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0000528

Physical Location & Seq

Genomic Coordinates Reverse (-)

66020180 .. 66021570

Gene Structure 1391 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000015442

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

ATGGGTGAGTCAGTTTCCTGCTCTTCGTCCACCATGACCGATAAAGCTGAATCGTCCGACCCTAAGGGGAGCAAGAGGGATTTCAGCTTTGCAATTCTCGAGCGGAAGAAGGCAGCGAATCGCCTTGTCGTCGATGAGGCCATCAACGATGTCAACTTTGTCGTCGCGCTCCACCTTGAAACCATGGAGAAGCTCCAGCTCTTTAGGGGCGACACAATCCTCATCAAGATTGAAGCTCATTTTGAAGCCAACCAAAAGGATCTAGATCTGTTGAAACATGACAACGTTCTGAGCAAGAAGCCCCTTGCTCCTCACCTGCGAGTTGTGCCTGATTATCTGTTGGATGCAACAACTAAAGAAGCCAGCAAGAGAGTTAAGCTTGCGAGAGCTGCAATGGGTAACAACAACCTTGGTCGCCGCGGATTGAAGAAAAAATTCAAGAAAGATAAGGACCCCCTTAAGTCTCTCAGTGCTCAGGCATACTTCAGCTTCCCTTTTGTACTTATTTCTTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010467 GO:0010501 GO:0016070 GO:0016072 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022613 GO:0031974 GO:0031981 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0071840 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

172

Amino Acids

19.11

Weight (kDa)

9.57

Isoelectric Point (pI)

24.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000528)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49650
fragaria_vesca	FvH4_1g18770 FvH4_1g18770 FvH4_7g34230
malus_domestica	MD01G1046900.v1.1 MD15G1305400.v1.1 MD16G1282300.v1.1
prunus_persica	Prupe.6G211700_v2.0.a1 Prupe.6G211700_v2.0.a1
pyrus_communis	pycom01g07280 pycom15g26860 pycom16g25190 pycom16g25200
rosa_chinensis	RchiOBHm_Chr1g0351151 RchiOBHm_Chr2g0109641 RchiOBHm_Chr4g0386971 RchiOBHm_Chr4g0413031 RchiOBHm_Chr4g0429541
rosa_laevigata	RLG00000007037 RLG00000009264 RLG00000009427 RLG00000015442 RLG00000017752 RLG00000017990 RLG00000022570 RLG00000028427
rosa_multiflora	Rmu_sc0000031.1_g000013 Rmu_sc0000332.1_g000058 Rmu_sc0000346.1_g000014 Rmu_sc0000698.1_g000147 Rmu_sc0001152.1_g000047 Rmu_sc0001494.1_g000003 Rmu_sc0002254.1_g000001 Rmu_sc0002531.1_g000001 Rmu_sc0002717.1_g000016 Rmu_sc0002717.1_g000017 Rmu_sc0003220.1_g000024 Rmu_sc0005016.1_g000007 Rmu_sc0005608.1_g000020 Rmu_sc0010686.1_g000003 Rmu_sc0011012.1_g000011 Rmu_sc0021503.1_g000001
rosa_roxburghii	Rroxscaffold_2G00082300 Rroxscaffold_2G00099190 Rroxscaffold_2G00129660 Rroxscaffold_2G00134070 Rroxscaffold_3G00236170 Rroxscaffold_5G00346460 Rroxscaffold_7G00156600 Rroxscaffold_7G00205430
rosa_rugosa	Rorug01G0267800 Rorug02G0020700 Rorug02G0020700 Rorug02G0161500 Rorug02G0384900 Rorug05G0567000
rosa_samantha	Rh1AG062400 Rh1AG132200 Rh1AG231500 Rh1CG126100 Rh1CG184600 Rh1CG215600 Rh1CG237400 Rh2AG213700 Rh2BG068400 Rh2BG224100 Rh2BG239600 Rh2CG069600 Rh2CG216000 Rh2CG585300 Rh2DG067600 Rh2DG219200 Rh4AG177200 Rh5AG509600 Rh5BG290500 Rh5BG328900 Rh5DG300300 Rh5DG340100 Rh6BG103200 Rh7DG421500
rosa_wichuraiana	Rw1G006030 Rw1G006580 Rw2G006320 Rw5G004390 Rw5G029130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	324
Acc36I	ACCTGC	1 cut(s)	324
AccBSI	CCGCTC	1 cut(s)	103
AccII	CGCG	2 cut(s)	167, 420
AciI	CCGC	3 cut(s)	103, 418, 420
AclI	AACGTT	1 cut(s)	285
AclWI	GGATC	1 cut(s)	267
AcsI	RAATTY	1 cut(s)	434
AcuI	CTGAAG	1 cut(s)	469
AfaI	GTAC	1 cut(s)	501
AflII	CTTAAG	1 cut(s)	458
AgsI	TTSAA	6 cut(s)	179, 233, 245, 274, 427, 439
AluBI	AGCT	8 cut(s)	47, 87, 193, 199, 236, 379, 389, 489
AluI	AGCT	8 cut(s)	47, 87, 193, 199, 236, 379, 389, 489
Alw21I	GWGCWC	1 cut(s)	475
Alw26I	GTCTC	1 cut(s)	468
AlwI	GGATC	1 cut(s)	267
Ama87I	CYCGRG	1 cut(s)	98
AoxI	GGCC	1 cut(s)	138
ApeKI	GCWGC	2 cut(s)	113, 389
ApoI	RAATTY	1 cut(s)	434
Asp700I	GAANNNNTTC	1 cut(s)	434
AspLEI	GCGC	1 cut(s)	169
AspS9I	GGNCC	1 cut(s)	451
AsuHPI	GGTGA	2 cut(s)	17, 305
AvaI	CYCGRG	1 cut(s)	98
AvaII	GGWCC	1 cut(s)	451
AxyI	CCTNAGG	1 cut(s)	63
Bbv12I	GWGCWC	1 cut(s)	475
BbvI	GCAGC	2 cut(s)	125, 376
BccI	CCATC	1 cut(s)	149
BcoDI	GTCTC	1 cut(s)	468
BfaI	CTAG	1 cut(s)	263
BfrI	CTTAAG	1 cut(s)	458
BfuAI	ACCTGC	1 cut(s)	324
BglII	AGATCT	1 cut(s)	265
BisI	GCNGC	3 cut(s)	114, 390, 418
BlsI	GCNGC	3 cut(s)	115, 391, 419
Bme18I	GGWCC	1 cut(s)	451
BmeT110I	CYCGRG	1 cut(s)	98
BmgT120I	GGNCC	1 cut(s)	451
BmiI	GGNNCC	1 cut(s)	453
BmsI	GCATC	1 cut(s)	334
BpmI	CTGGAG	1 cut(s)	179
Bpu10I	CCTNAGC	1 cut(s)	474
BsaBI	GATNNNNATC	1 cut(s)	264
BsaJI	CCNNGG	3 cut(s)	183, 409, 418
Bse21I	CCTNAGG	1 cut(s)	63
Bse3DI	GCAATG	1 cut(s)	399
Bse8I	GATNNNNATC	1 cut(s)	264
BseDI	CCNNGG	3 cut(s)	183, 409, 418
BseGI	GGATG	1 cut(s)	349
BseJI	GATNNNNATC	1 cut(s)	264
BseMI	GCAATG	1 cut(s)	399
BseMII	CTCAG	3 cut(s)	281, 481, 488
BseRI	GAGGAG	1 cut(s)	300
BseXI	GCAGC	2 cut(s)	125, 376
Bsh1236I	CGCG	2 cut(s)	167, 420
BshFI	GGCC	1 cut(s)	140
BsiHKAI	GWGCWC	1 cut(s)	475
BsiHKCI	CYCGRG	1 cut(s)	98
BsmAI	GTCTC	1 cut(s)	468
BsnI	GGCC	1 cut(s)	140
BsoBI	CYCGRG	1 cut(s)	98
Bsp1286I	GDGCHC	1 cut(s)	475
Bsp143I	GATC	2 cut(s)	259, 265
Bsp19I	CCATGG	1 cut(s)	183
BspACI	CCGC	3 cut(s)	103, 418, 420
BspANI	GGCC	1 cut(s)	140
BspCNI	CTCAG	3 cut(s)	282, 480, 487
BspFNI	CGCG	2 cut(s)	167, 420
BspHI	TCATGA	1 cut(s)	512
BspLI	GGNNCC	1 cut(s)	453
BspMI	ACCTGC	1 cut(s)	324
BspPI	GGATC	1 cut(s)	267
BspQI	GCTCTTC	1 cut(s)	28
BspTI	CTTAAG	1 cut(s)	458
BsrBI	CCGCTC	1 cut(s)	103
BsrDI	GCAATG	1 cut(s)	399
BssECI	CCNNGG	3 cut(s)	183, 409, 418
BssMI	GATC	2 cut(s)	259, 265
BssT1I	CCWWGG	2 cut(s)	183, 409
Bst6I	CTCTTC	1 cut(s)	28
BstAFI	CTTAAG	1 cut(s)	458
BstC8I	GCNNGC	2 cut(s)	364, 381
BstDEI	CTNAG	4 cut(s)	63, 290, 467, 474
BstDSI	CCRYGG	2 cut(s)	183, 418
BstF5I	GGATG	1 cut(s)	349
BstFNI	CGCG	2 cut(s)	167, 420
BstHHI	GCGC	1 cut(s)	169
BstKTI	GATC	2 cut(s)	262, 268
BstMAI	GTCTC	1 cut(s)	468
BstMBI	GATC	2 cut(s)	259, 265
BstMWI	GCNNNNNNNGC	2 cut(s)	325, 389
BstUI	CGCG	2 cut(s)	167, 420
BstV1I	GCAGC	2 cut(s)	125, 376
BstX2I	RGATCY	2 cut(s)	259, 265
BstYI	RGATCY	2 cut(s)	259, 265
Bsu36I	CCTNAGG	1 cut(s)	63
BsuRI	GGCC	1 cut(s)	140
BtgI	CCRYGG	2 cut(s)	183, 418
BtsCI	GGATG	1 cut(s)	349
BtsIMutI	CAGTG	1 cut(s)	475
BveI	ACCTGC	1 cut(s)	324
Cac8I	GCNNGC	2 cut(s)	364, 381
CciI	TCATGA	1 cut(s)	512
CfoI	GCGC	1 cut(s)	169
Cfr13I	GGNCC	1 cut(s)	451
Cfr42I	CCGCGG	1 cut(s)	421
Csp6I	GTAC	1 cut(s)	500
CviAII	CATG	4 cut(s)	34, 184, 278, 513
CviQI	GTAC	1 cut(s)	500
DdeI	CTNAG	4 cut(s)	63, 290, 467, 474
DpnI	GATC	2 cut(s)	261, 267
DpnII	GATC	2 cut(s)	259, 265
Eam1104I	CTCTTC	1 cut(s)	28
EarI	CTCTTC	1 cut(s)	28
Eco130I	CCWWGG	2 cut(s)	183, 409
Eco47I	GGWCC	1 cut(s)	451
Eco57I	CTGAAG	1 cut(s)	469
Eco81I	CCTNAGG	1 cut(s)	63
Eco88I	CYCGRG	1 cut(s)	98
EcoO109I	RGGNCCY	1 cut(s)	451
EcoT14I	CCWWGG	2 cut(s)	183, 409
ErhI	CCWWGG	2 cut(s)	183, 409
FaeI	CATG	4 cut(s)	37, 187, 281, 516
FaiI	YATR	5 cut(s)	35, 185, 279, 481, 514
FatI	CATG	4 cut(s)	33, 183, 277, 512
Fnu4HI	GCNGC	3 cut(s)	114, 390, 418
FokI	GGATG	1 cut(s)	356
Fsp4HI	GCNGC	3 cut(s)	114, 390, 418
FspBI	CTAG	1 cut(s)	263
GlaI	GCGC	1 cut(s)	168
GluI	GCNGC	3 cut(s)	114, 390, 418
GsuI	CTGGAG	1 cut(s)	179
HaeIII	GGCC	1 cut(s)	140
HhaI	GCGC	1 cut(s)	169
Hin1II	CATG	4 cut(s)	37, 187, 281, 516
Hin6I	GCGC	1 cut(s)	167
HinP1I	GCGC	1 cut(s)	167
HincII	GTYRAC	1 cut(s)	154
HindII	GTYRAC	1 cut(s)	154
HindIII	AAGCTT	1 cut(s)	377
HinfI	GANTC	3 cut(s)	8, 50, 118
HphI	GGTGA	2 cut(s)	17, 305
Hpy166II	GTNNAC	2 cut(s)	30, 154
Hpy188I	TCNGA	2 cut(s)	58, 291
Hpy188III	TCNNGA	5 cut(s)	98, 226, 263, 439, 513
Hpy8I	GTNNAC	2 cut(s)	30, 154
Hpy99I	CGWCG	2 cut(s)	134, 167
HpyAV	CCTTC	1 cut(s)	103
HpyCH4IV	ACGT	1 cut(s)	285
HpyCH4V	TGCA	3 cut(s)	92, 347, 392
HpyF10VI	GCNNNNNNNGC	2 cut(s)	325, 389
HpyF3I	CTNAG	4 cut(s)	63, 290, 467, 474
HpySE526I	ACGT	1 cut(s)	285
Hsp92II	CATG	4 cut(s)	37, 187, 281, 516
HspAI	GCGC	1 cut(s)	167
KspI	CCGCGG	1 cut(s)	421
Kzo9I	GATC	2 cut(s)	259, 265
LguI	GCTCTTC	1 cut(s)	28
LmnI	GCTCC	4 cut(s)	69, 174, 198, 313
LpnPI	CCDG	6 cut(s)	31, 209, 329, 342, 376, 461
Lsp1109I	GCAGC	2 cut(s)	125, 376
LweI	GCATC	1 cut(s)	334
MaeI	CTAG	1 cut(s)	263
MaeII	ACGT	1 cut(s)	285
MaeIII	GTNAC	1 cut(s)	398
MalI	GATC	2 cut(s)	261, 267
MbiI	CCGCTC	1 cut(s)	103
MboI	GATC	2 cut(s)	259, 265
MboII	GAAGA	4 cut(s)	15, 118, 439, 501
MflI	RGATCY	2 cut(s)	259, 265
MhlI	GDGCHC	1 cut(s)	475
MluCI	AATT	2 cut(s)	93, 434
MlyI	GAGTC	1 cut(s)	17
MmeI	TCCRAC	2 cut(s)	81, 321
MnlI	CCTC	4 cut(s)	69, 130, 230, 321
MroXI	GAANNNNTTC	1 cut(s)	434
MseI	TTAA	2 cut(s)	375, 459
MspA1I	CMGCKG	1 cut(s)	420
MspCI	CTTAAG	1 cut(s)	458
MvnI	CGCG	2 cut(s)	167, 420
MwoI	GCNNNNNNNGC	2 cut(s)	325, 389
NcoI	CCATGG	1 cut(s)	183
NdeII	GATC	2 cut(s)	259, 265
NlaIII	CATG	4 cut(s)	37, 187, 281, 516
NlaIV	GGNNCC	1 cut(s)	453
PaeR7I	CTCGAG	1 cut(s)	98
PagI	TCATGA	1 cut(s)	512
PaqCI	CACCTGC	1 cut(s)	324
PciSI	GCTCTTC	1 cut(s)	28
PdmI	GAANNNNTTC	1 cut(s)	434
PfeI	GAWTC	2 cut(s)	50, 118
PkrI	GCNGC	3 cut(s)	115, 391, 419
PleI	GAGTC	1 cut(s)	16
PpsI	GAGTC	1 cut(s)	16
PpuMI	RGGWCCY	1 cut(s)	451
Psp1406I	AACGTT	1 cut(s)	285
Psp5II	RGGWCCY	1 cut(s)	451
PspN4I	GGNNCC	1 cut(s)	453
PspPI	GGNCC	1 cut(s)	451
PspPPI	RGGWCCY	1 cut(s)	451
PsuI	RGATCY	2 cut(s)	259, 265
RsaI	GTAC	1 cut(s)	501
RsaNI	GTAC	1 cut(s)	500
SacII	CCGCGG	1 cut(s)	421
SapI	GCTCTTC	1 cut(s)	28
SaqAI	TTAA	2 cut(s)	375, 459
SatI	GCNGC	3 cut(s)	114, 390, 418
Sau3AI	GATC	2 cut(s)	259, 265
Sau96I	GGNCC	1 cut(s)	451
SchI	GAGTC	1 cut(s)	17
SduI	GDGCHC	1 cut(s)	475
SfaNI	GCATC	1 cut(s)	334
Sfr274I	CTCGAG	1 cut(s)	98
Sfr303I	CCGCGG	1 cut(s)	421
SgrBI	CCGCGG	1 cut(s)	421
SinI	GGWCC	1 cut(s)	451
SlaI	CTCGAG	1 cut(s)	98
SmlI	CTYRAG	2 cut(s)	98, 458
SmoI	CTYRAG	2 cut(s)	98, 458
Sse9I	AATT	2 cut(s)	93, 434
SsiI	CCGC	3 cut(s)	103, 418, 420
SspMI	CTAG	1 cut(s)	263
StyI	CCWWGG	2 cut(s)	183, 409
TaiI	ACGT	1 cut(s)	288
TaqI	TCGA	2 cut(s)	99, 132
TaqII	GACCGA	1 cut(s)	53
TasI	AATT	2 cut(s)	93, 434
TatI	WGTACW	1 cut(s)	499
TauI	GCSGC	1 cut(s)	420
TfiI	GAWTC	2 cut(s)	50, 118
Tru1I	TTAA	2 cut(s)	375, 459
Tru9I	TTAA	2 cut(s)	375, 459
TscAI	CASTG	1 cut(s)	475
TseI	GCWGC	2 cut(s)	113, 389
TspDTI	ATGAA	1 cut(s)	501
TspRI	CASTG	1 cut(s)	475
Vha464I	CTTAAG	1 cut(s)	458
VpaK11BI	GGWCC	1 cut(s)	451
XapI	RAATTY	1 cut(s)	434
XbaI	TCTAGA	1 cut(s)	262
XhoI	CTCGAG	1 cut(s)	98
XmnI	GAANNNNTTC	1 cut(s)	434
XspI	CTAG	1 cut(s)	263

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.