DEAD-box ATP-dependent RNA helicase
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 438 |
| Acc36I | ACCTGC | 1 cut(s) | 438 |
| AclWI | GGATC | 1 cut(s) | 381 |
| AcsI | RAATTY | 3 cut(s) | 22, 43, 324 |
| AfaI | GTAC | 2 cut(s) | 94, 112 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 307, 590 |
| AflII | CTTAAG | 1 cut(s) | 560 |
| AgsI | TTSAA | 7 cut(s) | 68, 161, 204, 346, 359, 388, 541 |
| AjnI | CCWGG | 1 cut(s) | 523 |
| AluBI | AGCT | 5 cut(s) | 155, 266, 305, 493, 503 |
| AluI | AGCT | 5 cut(s) | 155, 266, 305, 493, 503 |
| Alw21I | GWGCWC | 2 cut(s) | 307, 577 |
| Alw26I | GTCTC | 2 cut(s) | 132, 570 |
| AlwI | GGATC | 1 cut(s) | 381 |
| Ama87I | CYCGRG | 1 cut(s) | 300 |
| ApeKI | GCWGC | 1 cut(s) | 503 |
| ApoI | RAATTY | 3 cut(s) | 22, 43, 324 |
| AspS9I | GGNCC | 2 cut(s) | 553, 581 |
| AsuHPI | GGTGA | 2 cut(s) | 194, 419 |
| AvaI | CYCGRG | 1 cut(s) | 300 |
| AvaII | GGWCC | 2 cut(s) | 553, 581 |
| BanII | GRGCYC | 1 cut(s) | 307 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 103, 135 |
| Bbv12I | GWGCWC | 2 cut(s) | 307, 577 |
| BbvI | GCAGC | 1 cut(s) | 490 |
| BccI | CCATC | 1 cut(s) | 605 |
| BceAI | ACGGC | 2 cut(s) | 272, 516 |
| BciT130I | CCWGG | 1 cut(s) | 525 |
| BclI | TGATCA | 1 cut(s) | 31 |
| BcoDI | GTCTC | 2 cut(s) | 132, 570 |
| BfaI | CTAG | 2 cut(s) | 377, 676 |
| BfrI | CTTAAG | 1 cut(s) | 560 |
| BfuAI | ACCTGC | 1 cut(s) | 438 |
| BglII | AGATCT | 1 cut(s) | 379 |
| BisI | GCNGC | 1 cut(s) | 504 |
| BlsI | GCNGC | 1 cut(s) | 505 |
| BmcAI | AGTACT | 1 cut(s) | 112 |
| Bme1390I | CCNGG | 1 cut(s) | 525 |
| Bme18I | GGWCC | 2 cut(s) | 553, 581 |
| BmeT110I | CYCGRG | 1 cut(s) | 300 |
| BmgT120I | GGNCC | 2 cut(s) | 553, 581 |
| BmiI | GGNNCC | 3 cut(s) | 555, 582, 583 |
| BmrFI | CCNGG | 1 cut(s) | 525 |
| BmsI | GCATC | 1 cut(s) | 448 |
| BpmI | CTGGAG | 1 cut(s) | 123 |
| Bpu10I | CCTNAGC | 2 cut(s) | 306, 576 |
| BsaBI | GATNNNNATC | 1 cut(s) | 378 |
| BsaJI | CCNNGG | 2 cut(s) | 523, 532 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 307, 590 |
| Bse1I | ACTGG | 3 cut(s) | 12, 100, 118 |
| Bse3DI | GCAATG | 1 cut(s) | 513 |
| Bse8I | GATNNNNATC | 1 cut(s) | 378 |
| BseBI | CCWGG | 1 cut(s) | 525 |
| BseDI | CCNNGG | 2 cut(s) | 523, 532 |
| BseGI | GGATG | 3 cut(s) | 10, 463, 647 |
| BseJI | GATNNNNATC | 1 cut(s) | 378 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 307, 590 |
| BseMI | GCAATG | 1 cut(s) | 513 |
| BseMII | CTCAG | 4 cut(s) | 258, 320, 583, 590 |
| BseNI | ACTGG | 3 cut(s) | 12, 100, 118 |
| BseRI | GAGGAG | 1 cut(s) | 414 |
| BseXI | GCAGC | 1 cut(s) | 490 |
| BsiHKAI | GWGCWC | 2 cut(s) | 307, 577 |
| BsiHKCI | CYCGRG | 1 cut(s) | 300 |
| BslFI | GGGAC | 1 cut(s) | 594 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 307, 590 |
| BsmAI | GTCTC | 2 cut(s) | 132, 570 |
| BsmFI | GGGAC | 1 cut(s) | 594 |
| BsmI | GAATGC | 1 cut(s) | 244 |
| BsoBI | CYCGRG | 1 cut(s) | 300 |
| Bsp1286I | GDGCHC | 2 cut(s) | 307, 577 |
| Bsp143I | GATC | 3 cut(s) | 31, 373, 379 |
| BspCNI | CTCAG | 4 cut(s) | 259, 319, 582, 589 |
| BspLI | GGNNCC | 3 cut(s) | 555, 582, 583 |
| BspMI | ACCTGC | 1 cut(s) | 438 |
| BspPI | GGATC | 1 cut(s) | 381 |
| BspQI | GCTCTTC | 1 cut(s) | 94 |
| BspTI | CTTAAG | 1 cut(s) | 560 |
| BsrDI | GCAATG | 1 cut(s) | 513 |
| BsrI | ACTGG | 3 cut(s) | 12, 100, 118 |
| BssECI | CCNNGG | 2 cut(s) | 523, 532 |
| BssMI | GATC | 3 cut(s) | 31, 373, 379 |
| Bst2UI | CCWGG | 1 cut(s) | 525 |
| Bst6I | CTCTTC | 2 cut(s) | 94, 156 |
| BstAFI | CTTAAG | 1 cut(s) | 560 |
| BstC8I | GCNNGC | 2 cut(s) | 478, 495 |
| BstDEI | CTNAG | 5 cut(s) | 59, 267, 306, 569, 576 |
| BstDSI | CCRYGG | 1 cut(s) | 532 |
| BstF5I | GGATG | 3 cut(s) | 10, 463, 647 |
| BstKTI | GATC | 3 cut(s) | 34, 376, 382 |
| BstMAI | GTCTC | 2 cut(s) | 132, 570 |
| BstMBI | GATC | 3 cut(s) | 31, 373, 379 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 439, 503, 637 |
| BstNI | CCWGG | 1 cut(s) | 525 |
| BstSCI | CCNGG | 1 cut(s) | 523 |
| BstV1I | GCAGC | 1 cut(s) | 490 |
| BstX2I | RGATCY | 2 cut(s) | 373, 379 |
| BstYI | RGATCY | 2 cut(s) | 373, 379 |
| BtgI | CCRYGG | 1 cut(s) | 532 |
| BtsCI | GGATG | 3 cut(s) | 10, 463, 647 |
| BtsI | GCAGTG | 2 cut(s) | 249, 622 |
| BtsIMutI | CAGTG | 3 cut(s) | 249, 577, 622 |
| BveI | ACCTGC | 1 cut(s) | 438 |
| Cac8I | GCNNGC | 2 cut(s) | 478, 495 |
| Cfr13I | GGNCC | 2 cut(s) | 553, 581 |
| Csp6I | GTAC | 2 cut(s) | 93, 111 |
| CviAII | CATG | 2 cut(s) | 392, 652 |
| CviJI | RGCY | 9 cut(s) | 155, 266, 305, 350, 362, 415, 476, 493, 503 |
| CviKI_1 | RGCY | 9 cut(s) | 155, 266, 305, 350, 362, 415, 476, 493, 503 |
| CviQI | GTAC | 2 cut(s) | 93, 111 |
| DdeI | CTNAG | 5 cut(s) | 59, 267, 306, 569, 576 |
| DpnI | GATC | 3 cut(s) | 33, 375, 381 |
| DpnII | GATC | 3 cut(s) | 31, 373, 379 |
| Eam1104I | CTCTTC | 2 cut(s) | 94, 156 |
| EarI | CTCTTC | 2 cut(s) | 94, 156 |
| Ecl136II | GAGCTC | 1 cut(s) | 305 |
| Eco24I | GRGCYC | 1 cut(s) | 307 |
| Eco47I | GGWCC | 2 cut(s) | 553, 581 |
| Eco53kI | GAGCTC | 1 cut(s) | 305 |
| Eco88I | CYCGRG | 1 cut(s) | 300 |
| EcoICRI | GAGCTC | 1 cut(s) | 305 |
| EcoO109I | RGGNCCY | 2 cut(s) | 553, 581 |
| EcoRI | GAATTC | 1 cut(s) | 22 |
| EcoRII | CCWGG | 1 cut(s) | 523 |
| EcoT38I | GRGCYC | 1 cut(s) | 307 |
| FaeI | CATG | 2 cut(s) | 395, 655 |
| FaiI | YATR | 9 cut(s) | 20, 53, 75, 106, 108, 393, 627, 653, 662 |
| FaqI | GGGAC | 1 cut(s) | 594 |
| FatI | CATG | 2 cut(s) | 391, 651 |
| FbaI | TGATCA | 1 cut(s) | 31 |
| Fnu4HI | GCNGC | 1 cut(s) | 504 |
| FokI | GGATG | 3 cut(s) | 17, 470, 634 |
| FriOI | GRGCYC | 1 cut(s) | 307 |
| Fsp4HI | GCNGC | 1 cut(s) | 504 |
| FspBI | CTAG | 2 cut(s) | 377, 676 |
| GluI | GCNGC | 1 cut(s) | 504 |
| GsuI | CTGGAG | 1 cut(s) | 123 |
| Hin1II | CATG | 2 cut(s) | 395, 655 |
| HindIII | AAGCTT | 2 cut(s) | 153, 491 |
| HinfI | GANTC | 4 cut(s) | 200, 248, 296, 537 |
| HphI | GGTGA | 2 cut(s) | 194, 419 |
| Hpy166II | GTNNAC | 1 cut(s) | 673 |
| Hpy188I | TCNGA | 1 cut(s) | 337 |
| Hpy188III | TCNNGA | 6 cut(s) | 40, 140, 300, 308, 377, 541 |
| Hpy8I | GTNNAC | 1 cut(s) | 673 |
| HpyAV | CCTTC | 3 cut(s) | 62, 340, 591 |
| HpyCH4V | TGCA | 3 cut(s) | 242, 461, 506 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 439, 503, 637 |
| HpyF3I | CTNAG | 5 cut(s) | 59, 267, 306, 569, 576 |
| Hsp92II | CATG | 2 cut(s) | 395, 655 |
| KflI | GGGWCCC | 1 cut(s) | 581 |
| Ksp22I | TGATCA | 1 cut(s) | 31 |
| Kzo9I | GATC | 3 cut(s) | 31, 373, 379 |
| LguI | GCTCTTC | 1 cut(s) | 94 |
| LmnI | GCTCC | 1 cut(s) | 427 |
| Lsp1109I | GCAGC | 1 cut(s) | 490 |
| LweI | GCATC | 1 cut(s) | 448 |
| MaeI | CTAG | 2 cut(s) | 377, 676 |
| MaeIII | GTNAC | 2 cut(s) | 274, 512 |
| MalI | GATC | 3 cut(s) | 33, 375, 381 |
| MboI | GATC | 3 cut(s) | 31, 373, 379 |
| MboII | GAAGA | 4 cut(s) | 111, 173, 203, 606 |
| MflI | RGATCY | 2 cut(s) | 373, 379 |
| MhlI | GDGCHC | 2 cut(s) | 307, 577 |
| MluCI | AATT | 4 cut(s) | 22, 43, 324, 331 |
| MlyI | GAGTC | 1 cut(s) | 257 |
| MmeI | TCCRAC | 1 cut(s) | 435 |
| MnlI | CCTC | 3 cut(s) | 66, 309, 435 |
| MseI | TTAA | 3 cut(s) | 254, 489, 561 |
| MslI | CAYNNNNRTG | 1 cut(s) | 652 |
| MspCI | CTTAAG | 1 cut(s) | 560 |
| MspR9I | CCNGG | 1 cut(s) | 525 |
| Mva1269I | GAATGC | 1 cut(s) | 244 |
| MvaI | CCWGG | 1 cut(s) | 525 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 439, 503, 637 |
| NdeII | GATC | 3 cut(s) | 31, 373, 379 |
| NlaIII | CATG | 2 cut(s) | 395, 655 |
| NlaIV | GGNNCC | 3 cut(s) | 555, 582, 583 |
| NmuCI | GTSAC | 1 cut(s) | 274 |
| PaqCI | CACCTGC | 1 cut(s) | 438 |
| PciSI | GCTCTTC | 1 cut(s) | 94 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 88 |
| PctI | GAATGC | 1 cut(s) | 244 |
| PfeI | GAWTC | 3 cut(s) | 200, 296, 537 |
| PkrI | GCNGC | 1 cut(s) | 505 |
| PleI | GAGTC | 1 cut(s) | 256 |
| PpsI | GAGTC | 1 cut(s) | 256 |
| PpuMI | RGGWCCY | 2 cut(s) | 553, 581 |
| Psp124BI | GAGCTC | 1 cut(s) | 307 |
| Psp5II | RGGWCCY | 2 cut(s) | 553, 581 |
| Psp6I | CCWGG | 1 cut(s) | 523 |
| PspGI | CCWGG | 1 cut(s) | 523 |
| PspN4I | GGNNCC | 3 cut(s) | 555, 582, 583 |
| PspPI | GGNCC | 2 cut(s) | 553, 581 |
| PspPPI | RGGWCCY | 2 cut(s) | 553, 581 |
| PsuI | RGATCY | 2 cut(s) | 373, 379 |
| RsaI | GTAC | 2 cut(s) | 94, 112 |
| RsaNI | GTAC | 2 cut(s) | 93, 111 |
| RseI | CAYNNNNRTG | 1 cut(s) | 652 |
| SacI | GAGCTC | 1 cut(s) | 307 |
| SapI | GCTCTTC | 1 cut(s) | 94 |
| SaqAI | TTAA | 3 cut(s) | 254, 489, 561 |
| SatI | GCNGC | 1 cut(s) | 504 |
| Sau3AI | GATC | 3 cut(s) | 31, 373, 379 |
| Sau96I | GGNCC | 2 cut(s) | 553, 581 |
| ScaI | AGTACT | 1 cut(s) | 112 |
| SchI | GAGTC | 1 cut(s) | 257 |
| ScrFI | CCNGG | 1 cut(s) | 525 |
| SduI | GDGCHC | 2 cut(s) | 307, 577 |
| SetI | ASST | 7 cut(s) | 157, 268, 307, 402, 432, 495, 505 |
| SfaNI | GCATC | 1 cut(s) | 448 |
| SinI | GGWCC | 2 cut(s) | 553, 581 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 652 |
| SmlI | CTYRAG | 1 cut(s) | 560 |
| SmoI | CTYRAG | 1 cut(s) | 560 |
| Sse9I | AATT | 4 cut(s) | 22, 43, 324, 331 |
| SspMI | CTAG | 2 cut(s) | 377, 676 |
| SstI | GAGCTC | 1 cut(s) | 307 |
| StyD4I | CCNGG | 1 cut(s) | 523 |
| TasI | AATT | 4 cut(s) | 22, 43, 324, 331 |
| TatI | WGTACW | 1 cut(s) | 110 |
| TfiI | GAWTC | 3 cut(s) | 200, 296, 537 |
| Tru1I | TTAA | 3 cut(s) | 254, 489, 561 |
| Tru9I | TTAA | 3 cut(s) | 254, 489, 561 |
| TscAI | CASTG | 3 cut(s) | 249, 577, 622 |
| TseFI | GTSAC | 1 cut(s) | 274 |
| TseI | GCWGC | 1 cut(s) | 503 |
| Tsp45I | GTSAC | 1 cut(s) | 274 |
| TspDTI | ATGAA | 5 cut(s) | 35, 68, 164, 204, 336 |
| TspRI | CASTG | 3 cut(s) | 249, 577, 622 |
| Vha464I | CTTAAG | 1 cut(s) | 560 |
| VpaK11BI | GGWCC | 2 cut(s) | 553, 581 |
| XapI | RAATTY | 3 cut(s) | 22, 43, 324 |
| XbaI | TCTAGA | 1 cut(s) | 376 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 241 |
| XspI | CTAG | 2 cut(s) | 377, 676 |
| ZrmI | AGTACT | 1 cut(s) | 112 |