Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0000528

Physical Location & Seq

Genomic Coordinates Forward (+)

25024043 .. 25028757

Gene Structure 4715 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG132200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGGGTAACAACAACCCTGGTCGCCGTGGATTCAAGAAAGATAAGGACCCCGTTAAGTCACTCAGTGCTCAGGGACCCAAGAAAGGAAGACGGGAAAGAAAAGATGGCAGTGACAACCATAAGCAAAAAAGAAACAAAGGTGAGATACAAAACAATGAGACAGAAATGATCATATCATCATCCTCATGTGGACGGACTACTTGGGTCAAATGGTGGCGGCAAGCAGAGAAGATTGAGGTGCAATCGTTAGAAGAGCTTCCAAAGCAGCTATTCCTGGAAATATATGAGCTTTCTCAAGCAAAGGATGTCTACACAAAATGCATATCGTCCGTGATCTCTGGGGTTGTTCAAGGTCTCAATGCAACTGTGTTTGCGTATGGTTCTACCGGAAGTGGTAAAACATATACAATGGTGGGGACACAAAATGATCTCGGGCTCATGGTTCTTAGTTTGCATACAATATTTGATCTGATAAAAAGGACAAGAGCTCTGATGAATTTGAAGTTACCTGCTCCTATCTTGAAGTCTATAACGAAGTGGGTCATGCAATGTGTTATGAAAATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000070 GO:0000226 GO:0000278 GO:0000280 GO:0000819 GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005871 GO:0005875 GO:0005929 GO:0006928 GO:0006996 GO:0007010 GO:0007017 GO:0007018 GO:0007019 GO:0007049 GO:0007059 GO:0008150 GO:0008574 GO:0009987 GO:0010938 GO:0015630 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022402 GO:0022411 GO:0030030 GO:0031109 GO:0031122 GO:0032984 GO:0032991 GO:0042623 GO:0042995 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043624 GO:0043933 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0044782 GO:0048285 GO:0051261 GO:0051276 GO:0060404 GO:0061523 GO:0070462 GO:0071840 GO:0097435 GO:0098813 GO:0120025 GO:0120036 GO:0140014 GO:1903008 GO:1903047 GO:1990939

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kinesin

Protein Analysis

188

Amino Acids

21.18

Weight (kDa)

9.85

Isoelectric Point (pI)

35.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Kinesin	PF00225	97 - 163	3.2e-20	Kinesin motor domain
Microtub_bd	PF16796	101 - 162	1.4e-09	Microtubule binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000528)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49650
fragaria_vesca	FvH4_1g18770 FvH4_1g18770 FvH4_7g34230
malus_domestica	MD01G1046900.v1.1 MD15G1305400.v1.1 MD16G1282300.v1.1
prunus_persica	Prupe.6G211700_v2.0.a1 Prupe.6G211700_v2.0.a1
pyrus_communis	pycom01g07280 pycom15g26860 pycom16g25190 pycom16g25200
rosa_chinensis	RchiOBHm_Chr1g0351151 RchiOBHm_Chr2g0109641 RchiOBHm_Chr4g0386971 RchiOBHm_Chr4g0413031 RchiOBHm_Chr4g0429541
rosa_laevigata	RLG00000007037 RLG00000009264 RLG00000009427 RLG00000015442 RLG00000017752 RLG00000017990 RLG00000022570 RLG00000028427
rosa_multiflora	Rmu_sc0000031.1_g000013 Rmu_sc0000332.1_g000058 Rmu_sc0000346.1_g000014 Rmu_sc0000698.1_g000147 Rmu_sc0001152.1_g000047 Rmu_sc0001494.1_g000003 Rmu_sc0002254.1_g000001 Rmu_sc0002531.1_g000001 Rmu_sc0002717.1_g000016 Rmu_sc0002717.1_g000017 Rmu_sc0003220.1_g000024 Rmu_sc0005016.1_g000007 Rmu_sc0005608.1_g000020 Rmu_sc0010686.1_g000003 Rmu_sc0011012.1_g000011 Rmu_sc0021503.1_g000001
rosa_roxburghii	Rroxscaffold_2G00082300 Rroxscaffold_2G00099190 Rroxscaffold_2G00129660 Rroxscaffold_2G00134070 Rroxscaffold_3G00236170 Rroxscaffold_5G00346460 Rroxscaffold_7G00156600 Rroxscaffold_7G00205430
rosa_rugosa	Rorug01G0267800 Rorug02G0020700 Rorug02G0020700 Rorug02G0161500 Rorug02G0384900 Rorug05G0567000
rosa_samantha	Rh1AG062400 Rh1AG132200 Rh1AG231500 Rh1CG126100 Rh1CG184600 Rh1CG215600 Rh1CG237400 Rh2AG213700 Rh2BG068400 Rh2BG224100 Rh2BG239600 Rh2CG069600 Rh2CG216000 Rh2CG585300 Rh2DG067600 Rh2DG219200 Rh4AG177200 Rh5AG509600 Rh5BG290500 Rh5BG328900 Rh5DG300300 Rh5DG340100 Rh6BG103200 Rh7DG421500
rosa_wichuraiana	Rw1G006030 Rw1G006580 Rw2G006320 Rw5G004390 Rw5G029130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	517
AccI	GTMKAC	1 cut(s)	309
AciI	CCGC	1 cut(s)	217
AcsI	RAATTY	2 cut(s)	496, 561
AdeI	CACNNNGTG	1 cut(s)	65
AfiI	CCNNNNNNNGG	1 cut(s)	83
AgsI	TTSAA	4 cut(s)	34, 350, 502, 523
AjnI	CCWGG	2 cut(s)	16, 273
AluBI	AGCT	4 cut(s)	256, 268, 289, 488
AluI	AGCT	4 cut(s)	256, 268, 289, 488
Alw21I	GWGCWC	2 cut(s)	70, 490
Alw26I	GTCTC	2 cut(s)	152, 359
Ama87I	CYCGRG	1 cut(s)	431
ApeKI	GCWGC	1 cut(s)	265
ApoI	RAATTY	2 cut(s)	496, 561
Asp700I	GAANNNNTTC	1 cut(s)	255
AspS9I	GGNCC	2 cut(s)	46, 74
AsuHPI	GGTGA	1 cut(s)	152
AvaI	CYCGRG	1 cut(s)	431
AvaII	GGWCC	2 cut(s)	46, 74
BanII	GRGCYC	2 cut(s)	438, 490
BbsI	GAAGAC	1 cut(s)	94
Bbv12I	GWGCWC	2 cut(s)	70, 490
BbvI	GCAGC	1 cut(s)	277
BccI	CCATC	1 cut(s)	98
BceAI	ACGGC	1 cut(s)	9
BciT130I	CCWGG	2 cut(s)	18, 275
BclI	TGATCA	1 cut(s)	168
BcoDI	GTCTC	2 cut(s)	152, 359
BfuAI	ACCTGC	1 cut(s)	517
BisI	GCNGC	2 cut(s)	218, 266
BlsI	GCNGC	2 cut(s)	219, 267
Bme1390I	CCNGG	2 cut(s)	18, 275
Bme18I	GGWCC	2 cut(s)	46, 74
BmeT110I	CYCGRG	1 cut(s)	431
BmgT120I	GGNCC	2 cut(s)	46, 74
BmiI	GGNNCC	3 cut(s)	48, 75, 76
BmrFI	CCNGG	2 cut(s)	18, 275
BpiI	GAAGAC	1 cut(s)	94
Bpu10I	CCTNAGC	1 cut(s)	69
BpuEI	CTTGAG	1 cut(s)	279
BsaI	GGTCTC	1 cut(s)	359
BsaJI	CCNNGG	2 cut(s)	16, 25
BsaWI	WCCGGW	1 cut(s)	386
Bsc4I	CCNNNNNNNGG	1 cut(s)	83
Bse3DI	GCAATG	1 cut(s)	554
BseBI	CCWGG	2 cut(s)	18, 275
BseDI	CCNNGG	2 cut(s)	16, 25
BseGI	GGATG	2 cut(s)	179, 310
BseLI	CCNNNNNNNGG	1 cut(s)	83
BseMI	GCAATG	1 cut(s)	554
BseMII	CTCAG	2 cut(s)	76, 83
BseXI	GCAGC	1 cut(s)	277
BsiHKAI	GWGCWC	2 cut(s)	70, 490
BsiHKCI	CYCGRG	1 cut(s)	431
BsiSI	CCGG	1 cut(s)	387
BslFI	GGGAC	2 cut(s)	87, 430
BslI	CCNNNNNNNGG	1 cut(s)	83
BsmAI	GTCTC	2 cut(s)	152, 359
BsmFI	GGGAC	2 cut(s)	87, 430
Bso31I	GGTCTC	1 cut(s)	359
BsoBI	CYCGRG	1 cut(s)	431
Bsp1286I	GDGCHC	3 cut(s)	70, 438, 490
Bsp143I	GATC	4 cut(s)	168, 333, 427, 466
BspACI	CCGC	1 cut(s)	217
BspCNI	CTCAG	2 cut(s)	75, 82
BspLI	GGNNCC	3 cut(s)	48, 75, 76
BspMI	ACCTGC	1 cut(s)	517
BspQI	GCTCTTC	1 cut(s)	246
BspTNI	GGTCTC	1 cut(s)	359
BsrDI	GCAATG	1 cut(s)	554
BssECI	CCNNGG	2 cut(s)	16, 25
BssMI	GATC	4 cut(s)	168, 333, 427, 466
Bst2UI	CCWGG	2 cut(s)	18, 275
Bst4CI	ACNGT	1 cut(s)	367
Bst6I	CTCTTC	1 cut(s)	246
BstC8I	GCNNGC	1 cut(s)	222
BstDEI	CTNAG	3 cut(s)	62, 69, 446
BstDSI	CCRYGG	1 cut(s)	25
BstF5I	GGATG	2 cut(s)	179, 310
BstKTI	GATC	4 cut(s)	171, 336, 430, 469
BstMAI	GTCTC	2 cut(s)	152, 359
BstMBI	GATC	4 cut(s)	168, 333, 427, 466
BstMWI	GCNNNNNNNGC	1 cut(s)	262
BstNI	CCWGG	2 cut(s)	18, 275
BstSCI	CCNGG	2 cut(s)	16, 273
BstV1I	GCAGC	1 cut(s)	277
BstV2I	GAAGAC	1 cut(s)	94
BtgI	CCRYGG	1 cut(s)	25
BtsCI	GGATG	2 cut(s)	179, 310
BtsI	GCAGTG	1 cut(s)	115
BtsIMutI	CAGTG	2 cut(s)	70, 115
BveI	ACCTGC	1 cut(s)	517
Cac8I	GCNNGC	1 cut(s)	222
Cfr13I	GGNCC	2 cut(s)	46, 74
CviAII	CATG	3 cut(s)	186, 439, 544
CviJI	RGCY	5 cut(s)	256, 268, 289, 436, 488
CviKI_1	RGCY	5 cut(s)	256, 268, 289, 436, 488
DdeI	CTNAG	3 cut(s)	62, 69, 446
DpnI	GATC	4 cut(s)	170, 335, 429, 468
DpnII	GATC	4 cut(s)	168, 333, 427, 466
DraIII	CACNNNGTG	1 cut(s)	65
Eam1104I	CTCTTC	1 cut(s)	246
EarI	CTCTTC	1 cut(s)	246
Ecl136II	GAGCTC	1 cut(s)	488
Eco24I	GRGCYC	2 cut(s)	438, 490
Eco31I	GGTCTC	1 cut(s)	359
Eco47I	GGWCC	2 cut(s)	46, 74
Eco53kI	GAGCTC	1 cut(s)	488
Eco88I	CYCGRG	1 cut(s)	431
EcoICRI	GAGCTC	1 cut(s)	488
EcoO109I	RGGNCCY	2 cut(s)	46, 74
EcoRII	CCWGG	2 cut(s)	16, 273
EcoT22I	ATGCAT	1 cut(s)	323
EcoT38I	GRGCYC	2 cut(s)	438, 490
FaeI	CATG	3 cut(s)	189, 442, 547
FaqI	GGGAC	2 cut(s)	87, 430
FatI	CATG	3 cut(s)	185, 438, 543
FbaI	TGATCA	1 cut(s)	168
FblI	GTMKAC	1 cut(s)	309
Fnu4HI	GCNGC	2 cut(s)	218, 266
FokI	GGATG	2 cut(s)	166, 317
FriOI	GRGCYC	2 cut(s)	438, 490
Fsp4HI	GCNGC	2 cut(s)	218, 266
GluI	GCNGC	2 cut(s)	218, 266
HapII	CCGG	1 cut(s)	387
Hin1II	CATG	3 cut(s)	189, 442, 547
HinfI	GANTC	1 cut(s)	30
HpaII	CCGG	1 cut(s)	387
HphI	GGTGA	1 cut(s)	152
Hpy166II	GTNNAC	2 cut(s)	191, 310
Hpy188I	TCNGA	2 cut(s)	471, 492
Hpy188III	TCNNGA	2 cut(s)	34, 520
Hpy8I	GTNNAC	2 cut(s)	191, 310
HpyCH4III	ACNGT	1 cut(s)	367
HpyCH4V	TGCA	5 cut(s)	241, 321, 362, 454, 547
HpyF10VI	GCNNNNNNNGC	1 cut(s)	262
HpyF3I	CTNAG	3 cut(s)	62, 69, 446
Hsp92II	CATG	3 cut(s)	189, 442, 547
KflI	GGGWCCC	1 cut(s)	74
Ksp22I	TGATCA	1 cut(s)	168
Kzo9I	GATC	4 cut(s)	168, 333, 427, 466
LguI	GCTCTTC	1 cut(s)	246
LmnI	GCTCC	1 cut(s)	517
LpnPI	CCDG	8 cut(s)	3, 30, 56, 260, 287, 324, 400, 522
Lsp1109I	GCAGC	1 cut(s)	277
MaeIII	GTNAC	4 cut(s)	5, 57, 110, 504
MalI	GATC	4 cut(s)	170, 335, 429, 468
MboI	GATC	4 cut(s)	168, 333, 427, 466
MboII	GAAGA	3 cut(s)	99, 241, 263
MhlI	GDGCHC	3 cut(s)	70, 438, 490
MluCI	AATT	2 cut(s)	496, 561
MnlI	CCTC	2 cut(s)	193, 229
Mph1103I	ATGCAT	1 cut(s)	323
MroXI	GAANNNNTTC	1 cut(s)	255
MseI	TTAA	2 cut(s)	54, 565
MslI	CAYNNNNRTG	1 cut(s)	184
MspI	CCGG	1 cut(s)	387
MspR9I	CCNGG	2 cut(s)	18, 275
MvaI	CCWGG	2 cut(s)	18, 275
MwoI	GCNNNNNNNGC	1 cut(s)	262
NdeII	GATC	4 cut(s)	168, 333, 427, 466
NlaIII	CATG	3 cut(s)	189, 442, 547
NlaIV	GGNNCC	3 cut(s)	48, 75, 76
NmuCI	GTSAC	2 cut(s)	57, 110
NsiI	ATGCAT	1 cut(s)	323
PciSI	GCTCTTC	1 cut(s)	246
PdmI	GAANNNNTTC	1 cut(s)	255
PfeI	GAWTC	1 cut(s)	30
PfoI	TCCNGGA	1 cut(s)	273
PkrI	GCNGC	2 cut(s)	219, 267
PpuMI	RGGWCCY	2 cut(s)	46, 74
Psp124BI	GAGCTC	1 cut(s)	490
Psp5II	RGGWCCY	2 cut(s)	46, 74
Psp6I	CCWGG	2 cut(s)	16, 273
PspGI	CCWGG	2 cut(s)	16, 273
PspN4I	GGNNCC	3 cut(s)	48, 75, 76
PspPI	GGNCC	2 cut(s)	46, 74
PspPPI	RGGWCCY	2 cut(s)	46, 74
RseI	CAYNNNNRTG	1 cut(s)	184
SacI	GAGCTC	1 cut(s)	490
SapI	GCTCTTC	1 cut(s)	246
SaqAI	TTAA	2 cut(s)	54, 565
SatI	GCNGC	2 cut(s)	218, 266
Sau3AI	GATC	4 cut(s)	168, 333, 427, 466
Sau96I	GGNCC	2 cut(s)	46, 74
ScrFI	CCNGG	2 cut(s)	18, 275
SduI	GDGCHC	3 cut(s)	70, 438, 490
SetI	ASST	8 cut(s)	142, 240, 258, 270, 291, 355, 490, 511
SinI	GGWCC	2 cut(s)	46, 74
SmiMI	CAYNNNNRTG	1 cut(s)	184
SmlI	CTYRAG	1 cut(s)	294
SmoI	CTYRAG	1 cut(s)	294
Sse9I	AATT	2 cut(s)	496, 561
SsiI	CCGC	1 cut(s)	217
SspI	AATATT	1 cut(s)	462
SstI	GAGCTC	1 cut(s)	490
StyD4I	CCNGG	2 cut(s)	16, 273
TaaI	ACNGT	1 cut(s)	367
TasI	AATT	2 cut(s)	496, 561
TauI	GCSGC	1 cut(s)	220
TfiI	GAWTC	1 cut(s)	30
Tru1I	TTAA	2 cut(s)	54, 565
Tru9I	TTAA	2 cut(s)	54, 565
TscAI	CASTG	2 cut(s)	70, 115
TseFI	GTSAC	2 cut(s)	57, 110
TseI	GCWGC	1 cut(s)	265
Tsp45I	GTSAC	2 cut(s)	57, 110
TspDTI	ATGAA	1 cut(s)	509
TspGWI	ACGGA	2 cut(s)	208, 319
TspRI	CASTG	2 cut(s)	70, 115
VpaK11BI	GGWCC	2 cut(s)	46, 74
XapI	RAATTY	2 cut(s)	496, 561
XmiI	GTMKAC	1 cut(s)	309
XmnI	GAANNNNTTC	1 cut(s)	255
Zsp2I	ATGCAT	1 cut(s)	323

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.