Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002717.1

Orthogroup ID

OG0000528

Physical Location & Seq

Genomic Coordinates Reverse (-)

78338 .. 80355

Gene Structure 2018 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002717.1_g000016.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

atgaaattctcacctctaaaaagtgacaaggttctgagcaagaagccccctactcctcacctgcgagttgtgcctgattatctgttggatgcaacaactaaagaagccaacgagagagttaaccttgcgagatctgcaatgggtaacaacaaccctggtcgccgtggattcaagaaagataaggacccccttaagtcactcagtgctcaggttctgagcaagaagccccctactcctcacctgcgagttgtgcctgattatctgttggatgcaacaactaaagaagccaatgagaaaattaagcttgcgagagctgcaatgggtaacaacaaccctggtcgccgtggattcaagaaagataaggacccccttaagtcactcagtactcagaatcgaaccaaggagaagaagtattgctttgatcatgcattcgatcctgactgtactaatttggatgtctacacaaaatgcatatcgtccgtgatctctggggttgttcatggtctcaatgcaactgtgtttgcgtatggttctaccggaaggtactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000070 GO:0000226 GO:0000278 GO:0000280 GO:0000819 GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005871 GO:0005875 GO:0005929 GO:0006928 GO:0006996 GO:0007010 GO:0007017 GO:0007018 GO:0007019 GO:0007049 GO:0007059 GO:0008150 GO:0008574 GO:0009987 GO:0010938 GO:0015630 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022402 GO:0022411 GO:0030030 GO:0031109 GO:0031122 GO:0032984 GO:0032991 GO:0042623 GO:0042995 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043624 GO:0043933 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0044782 GO:0048285 GO:0051261 GO:0051276 GO:0060404 GO:0061523 GO:0070462 GO:0071840 GO:0097435 GO:0098813 GO:0120025 GO:0120036 GO:0140014 GO:1903008 GO:1903047 GO:1990939

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kinesin

Protein Analysis

182

Amino Acids

20.22

Weight (kDa)

9.87

Isoelectric Point (pI)

16.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000528)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49650
fragaria_vesca	FvH4_1g18770 FvH4_1g18770 FvH4_7g34230
malus_domestica	MD01G1046900.v1.1 MD15G1305400.v1.1 MD16G1282300.v1.1
prunus_persica	Prupe.6G211700_v2.0.a1 Prupe.6G211700_v2.0.a1
pyrus_communis	pycom01g07280 pycom15g26860 pycom16g25190 pycom16g25200
rosa_chinensis	RchiOBHm_Chr1g0351151 RchiOBHm_Chr2g0109641 RchiOBHm_Chr4g0386971 RchiOBHm_Chr4g0413031 RchiOBHm_Chr4g0429541
rosa_laevigata	RLG00000007037 RLG00000009264 RLG00000009427 RLG00000015442 RLG00000017752 RLG00000017990 RLG00000022570 RLG00000028427
rosa_multiflora	Rmu_sc0000031.1_g000013 Rmu_sc0000332.1_g000058 Rmu_sc0000346.1_g000014 Rmu_sc0000698.1_g000147 Rmu_sc0001152.1_g000047 Rmu_sc0001494.1_g000003 Rmu_sc0002254.1_g000001 Rmu_sc0002531.1_g000001 Rmu_sc0002717.1_g000016 Rmu_sc0002717.1_g000017 Rmu_sc0003220.1_g000024 Rmu_sc0005016.1_g000007 Rmu_sc0005608.1_g000020 Rmu_sc0010686.1_g000003 Rmu_sc0011012.1_g000011 Rmu_sc0021503.1_g000001
rosa_roxburghii	Rroxscaffold_2G00082300 Rroxscaffold_2G00099190 Rroxscaffold_2G00129660 Rroxscaffold_2G00134070 Rroxscaffold_3G00236170 Rroxscaffold_5G00346460 Rroxscaffold_7G00156600 Rroxscaffold_7G00205430
rosa_rugosa	Rorug01G0267800 Rorug02G0020700 Rorug02G0020700 Rorug02G0161500 Rorug02G0384900 Rorug05G0567000
rosa_samantha	Rh1AG062400 Rh1AG132200 Rh1AG231500 Rh1CG126100 Rh1CG184600 Rh1CG215600 Rh1CG237400 Rh2AG213700 Rh2BG068400 Rh2BG224100 Rh2BG239600 Rh2CG069600 Rh2CG216000 Rh2CG585300 Rh2DG067600 Rh2DG219200 Rh4AG177200 Rh5AG509600 Rh5BG290500 Rh5BG328900 Rh5DG300300 Rh5DG340100 Rh6BG103200 Rh7DG421500
rosa_wichuraiana	Rw1G006030 Rw1G006580 Rw2G006320 Rw5G004390 Rw5G029130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	69, 249
Acc36I	ACCTGC	2 cut(s)	69, 249
AccI	GTMKAC	1 cut(s)	459
AclWI	GGATC	1 cut(s)	428
AcsI	RAATTY	1 cut(s)	5
AdeI	CACNNNGTG	1 cut(s)	203
AfaI	GTAC	3 cut(s)	385, 445, 545
AflII	CTTAAG	2 cut(s)	191, 371
AgsI	TTSAA	2 cut(s)	172, 352
AjnI	CCWGG	2 cut(s)	154, 334
AluBI	AGCT	2 cut(s)	304, 314
AluI	AGCT	2 cut(s)	304, 314
Alw21I	GWGCWC	1 cut(s)	208
Alw26I	GTCTC	1 cut(s)	509
AlwI	GGATC	1 cut(s)	428
AlwNI	CAGNNNCTG	1 cut(s)	214
ApeKI	GCWGC	1 cut(s)	314
ApoI	RAATTY	1 cut(s)	5
AspS9I	GGNCC	2 cut(s)	184, 364
AsuHPI	GGTGA	3 cut(s)	3, 50, 230
AvaII	GGWCC	2 cut(s)	184, 364
Bbv12I	GWGCWC	1 cut(s)	208
BbvI	GCAGC	1 cut(s)	301
BceAI	ACGGC	2 cut(s)	147, 327
BciT130I	CCWGG	2 cut(s)	156, 336
BclI	TGATCA	1 cut(s)	421
BcoDI	GTCTC	1 cut(s)	509
BfrI	CTTAAG	2 cut(s)	191, 371
BfuAI	ACCTGC	2 cut(s)	69, 249
BglII	AGATCT	1 cut(s)	131
BisI	GCNGC	1 cut(s)	315
BlsI	GCNGC	1 cut(s)	316
BmcAI	AGTACT	1 cut(s)	385
Bme1390I	CCNGG	2 cut(s)	156, 336
Bme18I	GGWCC	2 cut(s)	184, 364
BmgT120I	GGNCC	2 cut(s)	184, 364
BmiI	GGNNCC	2 cut(s)	186, 366
BmrFI	CCNGG	2 cut(s)	156, 336
BmsI	GCATC	2 cut(s)	79, 259
Bpu10I	CCTNAGC	1 cut(s)	207
BsaI	GGTCTC	1 cut(s)	509
BsaJI	CCNNGG	5 cut(s)	154, 163, 334, 343, 399
BsaWI	WCCGGW	1 cut(s)	536
BsaXI	ACNNNNNCTCC	2 cut(s)	395, 425
Bse3DI	GCAATG	2 cut(s)	144, 324
BseBI	CCWGG	2 cut(s)	156, 336
BseDI	CCNNGG	5 cut(s)	154, 163, 334, 343, 399
BseGI	GGATG	3 cut(s)	94, 274, 460
BseMI	GCAATG	2 cut(s)	144, 324
BseMII	CTCAG	6 cut(s)	26, 206, 214, 221, 394, 401
BseRI	GAGGAG	2 cut(s)	45, 225
BseXI	GCAGC	1 cut(s)	301
BsiHKAI	GWGCWC	1 cut(s)	208
BsiSI	CCGG	1 cut(s)	537
BsmAI	GTCTC	1 cut(s)	509
BsmI	GAATGC	1 cut(s)	428
Bso31I	GGTCTC	1 cut(s)	509
Bsp1286I	GDGCHC	1 cut(s)	208
Bsp143I	GATC	4 cut(s)	131, 421, 433, 483
BspCNI	CTCAG	6 cut(s)	27, 207, 213, 220, 393, 400
BspLI	GGNNCC	2 cut(s)	186, 366
BspMI	ACCTGC	2 cut(s)	69, 249
BspPI	GGATC	1 cut(s)	428
BspTI	CTTAAG	2 cut(s)	191, 371
BspTNI	GGTCTC	1 cut(s)	509
BsrDI	GCAATG	2 cut(s)	144, 324
BssECI	CCNNGG	5 cut(s)	154, 163, 334, 343, 399
BssMI	GATC	4 cut(s)	131, 421, 433, 483
BssT1I	CCWWGG	1 cut(s)	399
Bst2UI	CCWGG	2 cut(s)	156, 336
Bst4CI	ACNGT	2 cut(s)	443, 517
BstAFI	CTTAAG	2 cut(s)	191, 371
BstC8I	GCNNGC	1 cut(s)	306
BstDEI	CTNAG	6 cut(s)	35, 200, 207, 215, 380, 387
BstDSI	CCRYGG	2 cut(s)	163, 343
BstF5I	GGATG	3 cut(s)	94, 274, 460
BstKTI	GATC	4 cut(s)	134, 424, 436, 486
BstMAI	GTCTC	1 cut(s)	509
BstMBI	GATC	4 cut(s)	131, 421, 433, 483
BstMWI	GCNNNNNNNGC	4 cut(s)	70, 134, 250, 314
BstNI	CCWGG	2 cut(s)	156, 336
BstSCI	CCNGG	2 cut(s)	154, 334
BstV1I	GCAGC	1 cut(s)	301
BstX2I	RGATCY	1 cut(s)	131
BstYI	RGATCY	1 cut(s)	131
BtgI	CCRYGG	2 cut(s)	163, 343
BtsCI	GGATG	3 cut(s)	94, 274, 460
BtsIMutI	CAGTG	1 cut(s)	208
BveI	ACCTGC	2 cut(s)	69, 249
Cac8I	GCNNGC	1 cut(s)	306
CaiI	CAGNNNCTG	1 cut(s)	214
Cfr13I	GGNCC	2 cut(s)	184, 364
Csp6I	GTAC	3 cut(s)	384, 444, 544
CviAII	CATG	2 cut(s)	425, 500
CviJI	RGCY	6 cut(s)	46, 107, 226, 287, 304, 314
CviKI_1	RGCY	6 cut(s)	46, 107, 226, 287, 304, 314
CviQI	GTAC	3 cut(s)	384, 444, 544
DdeI	CTNAG	6 cut(s)	35, 200, 207, 215, 380, 387
DpnI	GATC	4 cut(s)	133, 423, 435, 485
DpnII	GATC	4 cut(s)	131, 421, 433, 483
DraIII	CACNNNGTG	1 cut(s)	203
Eco130I	CCWWGG	1 cut(s)	399
Eco31I	GGTCTC	1 cut(s)	509
Eco47I	GGWCC	2 cut(s)	184, 364
EcoO109I	RGGNCCY	2 cut(s)	184, 364
EcoRII	CCWGG	2 cut(s)	154, 334
EcoT14I	CCWWGG	1 cut(s)	399
EcoT22I	ATGCAT	2 cut(s)	430, 473
ErhI	CCWWGG	1 cut(s)	399
FaeI	CATG	2 cut(s)	428, 503
FaiI	YATR	4 cut(s)	426, 473, 501, 528
FalI	AAGNNNNNCTT	2 cut(s)	401, 433
FatI	CATG	2 cut(s)	424, 499
FbaI	TGATCA	1 cut(s)	421
FblI	GTMKAC	1 cut(s)	459
Fnu4HI	GCNGC	1 cut(s)	315
FokI	GGATG	3 cut(s)	101, 281, 467
Fsp4HI	GCNGC	1 cut(s)	315
GluI	GCNGC	1 cut(s)	315
HapII	CCGG	1 cut(s)	537
Hin1II	CATG	2 cut(s)	428, 503
HincII	GTYRAC	1 cut(s)	121
HindII	GTYRAC	1 cut(s)	121
HindIII	AAGCTT	1 cut(s)	302
HinfI	GANTC	3 cut(s)	168, 348, 391
HpaI	GTTAAC	1 cut(s)	121
HpaII	CCGG	1 cut(s)	537
HphI	GGTGA	3 cut(s)	3, 50, 230
Hpy166II	GTNNAC	2 cut(s)	121, 460
Hpy188I	TCNGA	3 cut(s)	36, 216, 390
Hpy188III	TCNNGA	3 cut(s)	172, 352, 437
Hpy8I	GTNNAC	2 cut(s)	121, 460
HpyAV	CCTTC	1 cut(s)	534
HpyCH4III	ACNGT	2 cut(s)	443, 517
HpyCH4V	TGCA	7 cut(s)	92, 137, 272, 317, 428, 471, 512
HpyF10VI	GCNNNNNNNGC	4 cut(s)	70, 134, 250, 314
HpyF3I	CTNAG	6 cut(s)	35, 200, 207, 215, 380, 387
Hsp92II	CATG	2 cut(s)	428, 503
Ksp22I	TGATCA	1 cut(s)	421
KspAI	GTTAAC	1 cut(s)	121
Kzo9I	GATC	4 cut(s)	131, 421, 433, 483
Lsp1109I	GCAGC	1 cut(s)	301
LweI	GCATC	2 cut(s)	79, 259
MaeIII	GTNAC	5 cut(s)	23, 143, 195, 323, 375
MalI	GATC	4 cut(s)	133, 423, 435, 485
MboI	GATC	4 cut(s)	131, 421, 433, 483
MboII	GAAGA	1 cut(s)	418
MflI	RGATCY	1 cut(s)	131
MhlI	GDGCHC	1 cut(s)	208
MluCI	AATT	3 cut(s)	5, 297, 448
MmeI	TCCRAC	2 cut(s)	66, 246
MnlI	CCTC	3 cut(s)	24, 66, 246
Mph1103I	ATGCAT	2 cut(s)	430, 473
MseI	TTAA	4 cut(s)	120, 192, 300, 372
MspCI	CTTAAG	2 cut(s)	191, 371
MspI	CCGG	1 cut(s)	537
MspR9I	CCNGG	2 cut(s)	156, 336
Mva1269I	GAATGC	1 cut(s)	428
MvaI	CCWGG	2 cut(s)	156, 336
MwoI	GCNNNNNNNGC	4 cut(s)	70, 134, 250, 314
NdeII	GATC	4 cut(s)	131, 421, 433, 483
NlaIII	CATG	2 cut(s)	428, 503
NlaIV	GGNNCC	2 cut(s)	186, 366
NmuCI	GTSAC	3 cut(s)	23, 195, 375
NsiI	ATGCAT	2 cut(s)	430, 473
PaqCI	CACCTGC	2 cut(s)	69, 249
PctI	GAATGC	1 cut(s)	428
PfeI	GAWTC	3 cut(s)	168, 348, 391
PkrI	GCNGC	1 cut(s)	316
PpuMI	RGGWCCY	2 cut(s)	184, 364
Psp5II	RGGWCCY	2 cut(s)	184, 364
Psp6I	CCWGG	2 cut(s)	154, 334
PspGI	CCWGG	2 cut(s)	154, 334
PspN4I	GGNNCC	2 cut(s)	186, 366
PspPI	GGNCC	2 cut(s)	184, 364
PspPPI	RGGWCCY	2 cut(s)	184, 364
PstNI	CAGNNNCTG	1 cut(s)	214
PsuI	RGATCY	1 cut(s)	131
RsaI	GTAC	3 cut(s)	385, 445, 545
RsaNI	GTAC	3 cut(s)	384, 444, 544
SaqAI	TTAA	4 cut(s)	120, 192, 300, 372
SatI	GCNGC	1 cut(s)	315
Sau3AI	GATC	4 cut(s)	131, 421, 433, 483
Sau96I	GGNCC	2 cut(s)	184, 364
ScaI	AGTACT	1 cut(s)	385
ScrFI	CCNGG	2 cut(s)	156, 336
SduI	GDGCHC	1 cut(s)	208
SetI	ASST	9 cut(s)	16, 33, 63, 126, 213, 243, 306, 316, 545
SfaNI	GCATC	2 cut(s)	79, 259
SinI	GGWCC	2 cut(s)	184, 364
SmlI	CTYRAG	2 cut(s)	191, 371
SmoI	CTYRAG	2 cut(s)	191, 371
Sse9I	AATT	3 cut(s)	5, 297, 448
StyD4I	CCNGG	2 cut(s)	154, 334
StyI	CCWWGG	1 cut(s)	399
TaaI	ACNGT	2 cut(s)	443, 517
TaqI	TCGA	2 cut(s)	394, 432
TasI	AATT	3 cut(s)	5, 297, 448
TatI	WGTACW	2 cut(s)	383, 443
TfiI	GAWTC	3 cut(s)	168, 348, 391
Tru1I	TTAA	4 cut(s)	120, 192, 300, 372
Tru9I	TTAA	4 cut(s)	120, 192, 300, 372
TscAI	CASTG	1 cut(s)	208
TseFI	GTSAC	3 cut(s)	23, 195, 375
TseI	GCWGC	1 cut(s)	314
Tsp45I	GTSAC	3 cut(s)	23, 195, 375
TspDTI	ATGAA	2 cut(s)	17, 488
TspGWI	ACGGA	1 cut(s)	469
TspRI	CASTG	1 cut(s)	208
Vha464I	CTTAAG	2 cut(s)	191, 371
VpaK11BI	GGWCC	2 cut(s)	184, 364
XapI	RAATTY	1 cut(s)	5
XmiI	GTMKAC	1 cut(s)	459
ZrmI	AGTACT	1 cut(s)	385
Zsp2I	ATGCAT	2 cut(s)	430, 473

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.