Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0000528

Physical Location & Seq

Genomic Coordinates Reverse (-)

23355899 .. 23359906

Gene Structure 4008 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00236170.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGAGTTGGGGGACTAAGAGGGATTTCAGCTCTGCGATTCTCGAGCAGAAGAAGGCAGCGAATCGCCTTGTCGTCGATGAGGCCATCAATGATGTCAACTCTGTTGTCGCGCTCCACCCTGAGACCATGGAGAAGCTCCATCTCTTTAGGGGCAACACAATCCTCATCAAGCTTGGGTATGTTCTCTCTTGCTTCCTTCCAATCTTTGTACCAATTGAAATTGTGAGCTATGCAATTTTGGTTTTAATTGCTTTATTCTATGATTTGTATGGTCACCTTGAGTTTGAACGTACTGTTGATTTTGTTATGCTTTTGAGATTGGACGGTCTGGAGAAGAGCAAAGGTGGAGATGGTAGCTCGATTGGTAATGATTCAAAAAGATCAATGGGACCGGTTTTCAGCACTTTTGTTTATGAGGAGGGATCTGAAAATGATTTATTCTGTGGAGAGAACGCTGGTGTGGTATTCGTCTGTGAAATGATCATCGATATCGTAAAGCACTCATTCATTGCTAAGTTCAATGACATAAAGCCCTTTGCATACTCTGAGTTTCTTGAAGGACCTATGCAAGCAGGTACTGTTTTGTTCAAAAGTGGGATTGAAGATTTGAAAGGTGGAAGTGCGGGACGAGAATCTGAATATCGTGGCAGACGTTCAAACAGGATCAAGAGCTTTGCCTACTTTCATCAACTATACTCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005737 GO:0005794 GO:0005829 GO:0005886 GO:0008150 GO:0009893 GO:0009894 GO:0009896 GO:0010035 GO:0010038 GO:0010604 GO:0012505 GO:0016020 GO:0019222 GO:0031974 GO:0031981 GO:0042176 GO:0042221 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045732 GO:0046686 GO:0048518 GO:0050789 GO:0050896 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0065007 GO:0070013 GO:0071944 GO:0080090

KEGG Pathways

Metabolic & Signaling

ko04141 ko05134 map04141 map05134

Pfam Domains

Protein Families

AAA CDC48_2 CDC48_N Vps4_C

Protein Analysis

233

Amino Acids

26.13

Weight (kDa)

5.6

Isoelectric Point (pI)

34.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF747	PF05346	151 - 186	2.6e-10	Eukaryotic membrane protein family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000528)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49650
fragaria_vesca	FvH4_1g18770 FvH4_1g18770 FvH4_7g34230
malus_domestica	MD01G1046900.v1.1 MD15G1305400.v1.1 MD16G1282300.v1.1
prunus_persica	Prupe.6G211700_v2.0.a1 Prupe.6G211700_v2.0.a1
pyrus_communis	pycom01g07280 pycom15g26860 pycom16g25190 pycom16g25200
rosa_chinensis	RchiOBHm_Chr1g0351151 RchiOBHm_Chr2g0109641 RchiOBHm_Chr4g0386971 RchiOBHm_Chr4g0413031 RchiOBHm_Chr4g0429541
rosa_laevigata	RLG00000007037 RLG00000009264 RLG00000009427 RLG00000015442 RLG00000017752 RLG00000017990 RLG00000022570 RLG00000028427
rosa_multiflora	Rmu_sc0000031.1_g000013 Rmu_sc0000332.1_g000058 Rmu_sc0000346.1_g000014 Rmu_sc0000698.1_g000147 Rmu_sc0001152.1_g000047 Rmu_sc0001494.1_g000003 Rmu_sc0002254.1_g000001 Rmu_sc0002531.1_g000001 Rmu_sc0002717.1_g000016 Rmu_sc0002717.1_g000017 Rmu_sc0003220.1_g000024 Rmu_sc0005016.1_g000007 Rmu_sc0005608.1_g000020 Rmu_sc0010686.1_g000003 Rmu_sc0011012.1_g000011 Rmu_sc0021503.1_g000001
rosa_roxburghii	Rroxscaffold_2G00082300 Rroxscaffold_2G00099190 Rroxscaffold_2G00129660 Rroxscaffold_2G00134070 Rroxscaffold_3G00236170 Rroxscaffold_5G00346460 Rroxscaffold_7G00156600 Rroxscaffold_7G00205430
rosa_rugosa	Rorug01G0267800 Rorug02G0020700 Rorug02G0020700 Rorug02G0161500 Rorug02G0384900 Rorug05G0567000
rosa_samantha	Rh1AG062400 Rh1AG132200 Rh1AG231500 Rh1CG126100 Rh1CG184600 Rh1CG215600 Rh1CG237400 Rh2AG213700 Rh2BG068400 Rh2BG224100 Rh2BG239600 Rh2CG069600 Rh2CG216000 Rh2CG585300 Rh2DG067600 Rh2DG219200 Rh4AG177200 Rh5AG509600 Rh5BG290500 Rh5BG328900 Rh5DG300300 Rh5DG340100 Rh6BG103200 Rh7DG421500
rosa_wichuraiana	Rw1G006030 Rw1G006580 Rw2G006320 Rw5G004390 Rw5G029130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	563
AccII	CGCG	1 cut(s)	110
AciI	CCGC	1 cut(s)	623
AclWI	GGATC	2 cut(s)	430, 671
AfaI	GTAC	3 cut(s)	210, 292, 577
AgeI	ACCGGT	1 cut(s)	391
AgsI	TTSAA	9 cut(s)	218, 287, 375, 520, 557, 589, 602, 610, 657
AluBI	AGCT	6 cut(s)	30, 136, 172, 228, 357, 672
AluI	AGCT	6 cut(s)	30, 136, 172, 228, 357, 672
Alw26I	GTCTC	1 cut(s)	116
AlwI	GGATC	2 cut(s)	430, 671
AlwNI	CAGNNNCTG	1 cut(s)	578
Ama87I	CYCGRG	1 cut(s)	41
AoxI	GGCC	1 cut(s)	81
ApeKI	GCWGC	1 cut(s)	56
AsiGI	ACCGGT	1 cut(s)	391
AspLEI	GCGC	1 cut(s)	112
AspS9I	GGNCC	2 cut(s)	389, 560
AsuHPI	GGTGA	1 cut(s)	266
AvaI	CYCGRG	1 cut(s)	41
AvaII	GGWCC	2 cut(s)	389, 560
BauI	CACGAG	1 cut(s)	697
BbvI	GCAGC	1 cut(s)	68
BccI	CCATC	3 cut(s)	92, 147, 344
BclI	TGATCA	1 cut(s)	480
BcoDI	GTCTC	1 cut(s)	116
BfuAI	ACCTGC	1 cut(s)	563
BisI	GCNGC	1 cut(s)	57
BlsI	GCNGC	1 cut(s)	58
Bme18I	GGWCC	2 cut(s)	389, 560
BmeT110I	CYCGRG	1 cut(s)	41
BmgT120I	GGNCC	2 cut(s)	389, 560
BmiI	GGNNCC	1 cut(s)	390
BpmI	CTGGAG	1 cut(s)	350
BpuEI	CTTGAG	1 cut(s)	299
Bsa29I	ATCGAT	1 cut(s)	486
BsaI	GGTCTC	1 cut(s)	116
BsaJI	CCNNGG	1 cut(s)	126
BsaWI	WCCGGW	1 cut(s)	391
Bse118I	RCCGGY	1 cut(s)	391
Bse3DI	GCAATG	1 cut(s)	507
BseCI	ATCGAT	1 cut(s)	486
BseDI	CCNNGG	1 cut(s)	126
BseMI	GCAATG	1 cut(s)	507
BseMII	CTCAG	2 cut(s)	111, 537
BseRI	GAGGAG	1 cut(s)	431
BseXI	GCAGC	1 cut(s)	68
Bsh1236I	CGCG	1 cut(s)	110
BshFI	GGCC	1 cut(s)	83
BshTI	ACCGGT	1 cut(s)	391
BshVI	ATCGAT	1 cut(s)	486
BsiHKCI	CYCGRG	1 cut(s)	41
BsiSI	CCGG	1 cut(s)	392
BslFI	GGGAC	3 cut(s)	25, 402, 639
BsmAI	GTCTC	1 cut(s)	116
BsmFI	GGGAC	3 cut(s)	25, 402, 639
BsnI	GGCC	1 cut(s)	83
Bso31I	GGTCTC	1 cut(s)	116
BsoBI	CYCGRG	1 cut(s)	41
Bsp143I	GATC	4 cut(s)	380, 422, 480, 663
Bsp19I	CCATGG	1 cut(s)	126
BspACI	CCGC	1 cut(s)	623
BspANI	GGCC	1 cut(s)	83
BspCNI	CTCAG	2 cut(s)	112, 538
BspDI	ATCGAT	1 cut(s)	486
BspFNI	CGCG	1 cut(s)	110
BspLI	GGNNCC	1 cut(s)	390
BspMI	ACCTGC	1 cut(s)	563
BspPI	GGATC	2 cut(s)	430, 671
BspQI	GCTCTTC	1 cut(s)	329
BspTNI	GGTCTC	1 cut(s)	116
BsrDI	GCAATG	1 cut(s)	507
BsrFI	RCCGGY	1 cut(s)	391
BssAI	RCCGGY	1 cut(s)	391
BssECI	CCNNGG	1 cut(s)	126
BssMI	GATC	4 cut(s)	380, 422, 480, 663
BssSI	CACGAG	1 cut(s)	697
BssT1I	CCWWGG	1 cut(s)	126
Bst2BI	CACGAG	1 cut(s)	697
Bst4CI	ACNGT	3 cut(s)	295, 326, 580
Bst6I	CTCTTC	1 cut(s)	329
BstC8I	GCNNGC	1 cut(s)	570
BstDEI	CTNAG	4 cut(s)	15, 120, 513, 546
BstDSI	CCRYGG	1 cut(s)	126
BstEII	GGTNACC	1 cut(s)	272
BstFNI	CGCG	1 cut(s)	110
BstHHI	GCGC	1 cut(s)	112
BstKTI	GATC	4 cut(s)	383, 425, 483, 666
BstMAI	GTCTC	1 cut(s)	116
BstMBI	GATC	4 cut(s)	380, 422, 480, 663
BstPI	GGTNACC	1 cut(s)	272
BstUI	CGCG	1 cut(s)	110
BstV1I	GCAGC	1 cut(s)	68
BstX2I	RGATCY	1 cut(s)	422
BstYI	RGATCY	1 cut(s)	422
Bsu15I	ATCGAT	1 cut(s)	486
BsuRI	GGCC	1 cut(s)	83
BsuTUI	ATCGAT	1 cut(s)	486
BtgI	CCRYGG	1 cut(s)	126
BveI	ACCTGC	1 cut(s)	563
Cac8I	GCNNGC	1 cut(s)	570
CaiI	CAGNNNCTG	1 cut(s)	578
CfoI	GCGC	1 cut(s)	112
Cfr10I	RCCGGY	1 cut(s)	391
Cfr13I	GGNCC	2 cut(s)	389, 560
ClaI	ATCGAT	1 cut(s)	486
Csp6I	GTAC	3 cut(s)	209, 291, 576
CspAI	ACCGGT	1 cut(s)	391
CviAII	CATG	1 cut(s)	127
CviJI	RGCY	8 cut(s)	30, 83, 136, 172, 228, 357, 532, 672
CviKI_1	RGCY	8 cut(s)	30, 83, 136, 172, 228, 357, 532, 672
CviQI	GTAC	3 cut(s)	209, 291, 576
DdeI	CTNAG	4 cut(s)	15, 120, 513, 546
DpnI	GATC	4 cut(s)	382, 424, 482, 665
DpnII	GATC	4 cut(s)	380, 422, 480, 663
Eam1104I	CTCTTC	1 cut(s)	329
EarI	CTCTTC	1 cut(s)	329
Eco130I	CCWWGG	1 cut(s)	126
Eco31I	GGTCTC	1 cut(s)	116
Eco32I	GATATC	1 cut(s)	490
Eco47I	GGWCC	2 cut(s)	389, 560
Eco88I	CYCGRG	1 cut(s)	41
Eco91I	GGTNACC	1 cut(s)	272
EcoO109I	RGGNCCY	1 cut(s)	560
EcoO65I	GGTNACC	1 cut(s)	272
EcoRV	GATATC	1 cut(s)	490
EcoT14I	CCWWGG	1 cut(s)	126
ErhI	CCWWGG	1 cut(s)	126
FaeI	CATG	1 cut(s)	130
FaqI	GGGAC	3 cut(s)	25, 402, 639
FatI	CATG	1 cut(s)	126
FauI	CCCGC	1 cut(s)	616
FbaI	TGATCA	1 cut(s)	480
Fnu4HI	GCNGC	1 cut(s)	57
Fsp4HI	GCNGC	1 cut(s)	57
GlaI	GCGC	1 cut(s)	111
GluI	GCNGC	1 cut(s)	57
GsuI	CTGGAG	1 cut(s)	350
HaeIII	GGCC	1 cut(s)	83
HapII	CCGG	1 cut(s)	392
HhaI	GCGC	1 cut(s)	112
Hin1II	CATG	1 cut(s)	130
Hin6I	GCGC	1 cut(s)	110
HinP1I	GCGC	1 cut(s)	110
HincII	GTYRAC	1 cut(s)	97
HindII	GTYRAC	1 cut(s)	97
HindIII	AAGCTT	1 cut(s)	170
HinfI	GANTC	4 cut(s)	37, 61, 371, 632
HpaII	CCGG	1 cut(s)	392
HphI	GGTGA	1 cut(s)	266
Hpy166II	GTNNAC	1 cut(s)	97
Hpy188I	TCNGA	3 cut(s)	427, 547, 637
Hpy188III	TCNNGA	5 cut(s)	41, 329, 554, 667, 699
Hpy8I	GTNNAC	1 cut(s)	97
Hpy99I	CGWCG	1 cut(s)	77
HpyAV	CCTTC	3 cut(s)	46, 206, 551
HpyCH4III	ACNGT	3 cut(s)	295, 326, 580
HpyCH4IV	ACGT	2 cut(s)	289, 652
HpyCH4V	TGCA	3 cut(s)	233, 539, 568
HpyF3I	CTNAG	4 cut(s)	15, 120, 513, 546
HpySE526I	ACGT	2 cut(s)	289, 652
Hsp92II	CATG	1 cut(s)	130
HspAI	GCGC	1 cut(s)	110
Ksp22I	TGATCA	1 cut(s)	480
Kzo9I	GATC	4 cut(s)	380, 422, 480, 663
LguI	GCTCTTC	1 cut(s)	329
LmnI	GCTCC	2 cut(s)	117, 141
LpnPI	CCDG	6 cut(s)	132, 314, 405, 441, 558, 646
Lsp1109I	GCAGC	1 cut(s)	68
MaeII	ACGT	2 cut(s)	289, 652
MaeIII	GTNAC	1 cut(s)	272
MalI	GATC	4 cut(s)	382, 424, 482, 665
MboI	GATC	4 cut(s)	380, 422, 480, 663
MboII	GAAGA	3 cut(s)	61, 346, 614
MfeI	CAATTG	1 cut(s)	213
MflI	RGATCY	1 cut(s)	422
MluCI	AATT	4 cut(s)	213, 219, 234, 246
MnlI	CCTC	5 cut(s)	12, 73, 173, 409, 412
MseI	TTAA	1 cut(s)	245
MspI	CCGG	1 cut(s)	392
MunI	CAATTG	1 cut(s)	213
MvnI	CGCG	1 cut(s)	110
NcoI	CCATGG	1 cut(s)	126
NdeII	GATC	4 cut(s)	380, 422, 480, 663
NlaIII	CATG	1 cut(s)	130
NlaIV	GGNNCC	1 cut(s)	390
NmuCI	GTSAC	1 cut(s)	272
PaeR7I	CTCGAG	1 cut(s)	41
PciSI	GCTCTTC	1 cut(s)	329
PcsI	WCGNNNNNNNCGW	1 cut(s)	649
PfeI	GAWTC	4 cut(s)	37, 61, 371, 632
PinAI	ACCGGT	1 cut(s)	391
PkrI	GCNGC	1 cut(s)	58
PpuMI	RGGWCCY	1 cut(s)	560
Psp5II	RGGWCCY	1 cut(s)	560
PspEI	GGTNACC	1 cut(s)	272
PspN4I	GGNNCC	1 cut(s)	390
PspPI	GGNCC	2 cut(s)	389, 560
PspPPI	RGGWCCY	1 cut(s)	560
PstNI	CAGNNNCTG	1 cut(s)	578
PsuI	RGATCY	1 cut(s)	422
RsaI	GTAC	3 cut(s)	210, 292, 577
RsaNI	GTAC	3 cut(s)	209, 291, 576
SapI	GCTCTTC	1 cut(s)	329
SaqAI	TTAA	1 cut(s)	245
SatI	GCNGC	1 cut(s)	57
Sau3AI	GATC	4 cut(s)	380, 422, 480, 663
Sau96I	GGNCC	2 cut(s)	389, 560
Sfr274I	CTCGAG	1 cut(s)	41
SinI	GGWCC	2 cut(s)	389, 560
SlaI	CTCGAG	1 cut(s)	41
SmlI	CTYRAG	2 cut(s)	41, 278
SmoI	CTYRAG	2 cut(s)	41, 278
Sse9I	AATT	4 cut(s)	213, 219, 234, 246
SsiI	CCGC	1 cut(s)	623
StyI	CCWWGG	1 cut(s)	126
TaaI	ACNGT	3 cut(s)	295, 326, 580
TaiI	ACGT	2 cut(s)	292, 655
TaqI	TCGA	4 cut(s)	42, 75, 359, 486
TasI	AATT	4 cut(s)	213, 219, 234, 246
TfiI	GAWTC	4 cut(s)	37, 61, 371, 632
Tru1I	TTAA	1 cut(s)	245
Tru9I	TTAA	1 cut(s)	245
TseFI	GTSAC	1 cut(s)	272
TseI	GCWGC	1 cut(s)	56
Tsp45I	GTSAC	1 cut(s)	272
TspDTI	ATGAA	2 cut(s)	496, 674
VpaK11BI	GGWCC	2 cut(s)	389, 560
XhoI	CTCGAG	1 cut(s)	41

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.