DEAD-box ATP-dependent RNA helicase
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 358 |
| AccII | CGCG | 1 cut(s) | 387 |
| AciI | CCGC | 9 cut(s) | 18, 23, 48, 66, 84, 124, 387, 569, 712 |
| AclWI | GGATC | 1 cut(s) | 560 |
| AcoI | YGGCCR | 2 cut(s) | 81, 296 |
| AcsI | RAATTY | 2 cut(s) | 620, 644 |
| AdeI | CACNNNGTG | 1 cut(s) | 709 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 13, 90, 118, 130, 351 |
| AgsI | TTSAA | 1 cut(s) | 31 |
| AleI | CACNNNNGTG | 1 cut(s) | 694 |
| AluBI | AGCT | 3 cut(s) | 457, 741, 770 |
| AluI | AGCT | 3 cut(s) | 457, 741, 770 |
| Alw26I | GTCTC | 3 cut(s) | 67, 519, 720 |
| AlwI | GGATC | 1 cut(s) | 560 |
| AoxI | GGCC | 5 cut(s) | 4, 19, 81, 109, 296 |
| ApeKI | GCWGC | 1 cut(s) | 457 |
| ApoI | RAATTY | 2 cut(s) | 620, 644 |
| AspLEI | GCGC | 1 cut(s) | 412 |
| AspS9I | GGNCC | 6 cut(s) | 4, 20, 37, 110, 121, 533 |
| AsuC2I | CCSGG | 2 cut(s) | 258, 626 |
| AsuHPI | GGTGA | 2 cut(s) | 359, 683 |
| AvaII | GGWCC | 3 cut(s) | 37, 121, 533 |
| BanI | GGYRCC | 1 cut(s) | 358 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 382, 414 |
| BbvI | GCAGC | 1 cut(s) | 444 |
| BceAI | ACGGC | 4 cut(s) | 35, 71, 111, 124 |
| BclI | TGATCA | 1 cut(s) | 442 |
| BcnI | CCSGG | 2 cut(s) | 258, 626 |
| BcoDI | GTCTC | 3 cut(s) | 67, 519, 720 |
| BisI | GCNGC | 3 cut(s) | 19, 84, 458 |
| BlpI | GCTNAGC | 1 cut(s) | 426 |
| BlsI | GCNGC | 3 cut(s) | 20, 85, 459 |
| Bme1390I | CCNGG | 2 cut(s) | 258, 626 |
| Bme18I | GGWCC | 3 cut(s) | 37, 121, 533 |
| BmgT120I | GGNCC | 6 cut(s) | 4, 20, 37, 110, 121, 533 |
| BmiI | GGNNCC | 2 cut(s) | 112, 360 |
| BmrFI | CCNGG | 2 cut(s) | 258, 626 |
| BmsI | GCATC | 2 cut(s) | 150, 666 |
| BoxI | GACNNNNGTC | 2 cut(s) | 59, 126 |
| Bpu10I | CCTNAGC | 1 cut(s) | 588 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 426 |
| BpuEI | CTTGAG | 1 cut(s) | 395 |
| BpuMI | CCSGG | 2 cut(s) | 258, 626 |
| BsaI | GGTCTC | 1 cut(s) | 720 |
| BsaWI | WCCGGW | 1 cut(s) | 351 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 29, 59 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 13, 90, 118, 130, 351 |
| Bse118I | RCCGGY | 4 cut(s) | 79, 298, 344, 361 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 13, 90, 118, 130, 351 |
| BseMII | CTCAG | 2 cut(s) | 440, 602 |
| BseX3I | CGGCCG | 1 cut(s) | 81 |
| BseXI | GCAGC | 1 cut(s) | 444 |
| BseYI | CCCAGC | 1 cut(s) | 539 |
| BsgI | GTGCAG | 1 cut(s) | 653 |
| Bsh1236I | CGCG | 1 cut(s) | 387 |
| Bsh1285I | CGRYCG | 1 cut(s) | 84 |
| BshFI | GGCC | 5 cut(s) | 6, 21, 83, 111, 298 |
| BshNI | GGYRCC | 1 cut(s) | 358 |
| BsiEI | CGRYCG | 1 cut(s) | 84 |
| BsiSI | CCGG | 8 cut(s) | 80, 257, 299, 345, 352, 362, 536, 626 |
| BslFI | GGGAC | 1 cut(s) | 556 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 13, 90, 118, 130, 351 |
| BsmAI | GTCTC | 3 cut(s) | 67, 519, 720 |
| BsmFI | GGGAC | 1 cut(s) | 556 |
| BsnI | GGCC | 5 cut(s) | 6, 21, 83, 111, 298 |
| Bso31I | GGTCTC | 1 cut(s) | 720 |
| Bsp143I | GATC | 3 cut(s) | 442, 565, 595 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 426 |
| BspACI | CCGC | 9 cut(s) | 18, 23, 48, 66, 84, 124, 387, 569, 712 |
| BspANI | GGCC | 5 cut(s) | 6, 21, 83, 111, 298 |
| BspCNI | CTCAG | 2 cut(s) | 439, 601 |
| BspFNI | CGCG | 1 cut(s) | 387 |
| BspLI | GGNNCC | 2 cut(s) | 112, 360 |
| BspPI | GGATC | 1 cut(s) | 560 |
| BspT107I | GGYRCC | 1 cut(s) | 358 |
| BspTNI | GGTCTC | 1 cut(s) | 720 |
| BsrFI | RCCGGY | 4 cut(s) | 79, 298, 344, 361 |
| BssAI | RCCGGY | 4 cut(s) | 79, 298, 344, 361 |
| BssMI | GATC | 3 cut(s) | 442, 565, 595 |
| Bst4CI | ACNGT | 4 cut(s) | 202, 358, 547, 764 |
| Bst6I | CTCTTC | 1 cut(s) | 403 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 709 |
| BstC8I | GCNNGC | 2 cut(s) | 23, 300 |
| BstDEI | CTNAG | 3 cut(s) | 426, 588, 640 |
| BstEII | GGTNACC | 1 cut(s) | 347 |
| BstFNI | CGCG | 1 cut(s) | 387 |
| BstHHI | GCGC | 1 cut(s) | 412 |
| BstKTI | GATC | 3 cut(s) | 445, 568, 598 |
| BstMAI | GTCTC | 3 cut(s) | 67, 519, 720 |
| BstMBI | GATC | 3 cut(s) | 442, 565, 595 |
| BstMCI | CGRYCG | 1 cut(s) | 84 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 709 |
| BstPAI | GACNNNNGTC | 2 cut(s) | 59, 126 |
| BstPI | GGTNACC | 1 cut(s) | 347 |
| BstSCI | CCNGG | 2 cut(s) | 256, 624 |
| BstUI | CGCG | 1 cut(s) | 387 |
| BstV1I | GCAGC | 1 cut(s) | 444 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 696, 699 |
| BstZI | CGGCCG | 1 cut(s) | 81 |
| BsuRI | GGCC | 5 cut(s) | 6, 21, 83, 111, 298 |
| Cac8I | GCNNGC | 2 cut(s) | 23, 300 |
| CfoI | GCGC | 1 cut(s) | 412 |
| Cfr10I | RCCGGY | 4 cut(s) | 79, 298, 344, 361 |
| Cfr13I | GGNCC | 6 cut(s) | 4, 20, 37, 110, 121, 533 |
| CviAII | CATG | 3 cut(s) | 13, 322, 563 |
| DdeI | CTNAG | 3 cut(s) | 426, 588, 640 |
| DpnI | GATC | 3 cut(s) | 444, 567, 597 |
| DpnII | GATC | 3 cut(s) | 442, 565, 595 |
| DraIII | CACNNNGTG | 1 cut(s) | 709 |
| EaeI | YGGCCR | 2 cut(s) | 81, 296 |
| EagI | CGGCCG | 1 cut(s) | 81 |
| Eam1104I | CTCTTC | 1 cut(s) | 403 |
| EarI | CTCTTC | 1 cut(s) | 403 |
| EciI | GGCGGA | 1 cut(s) | 37 |
| EclXI | CGGCCG | 1 cut(s) | 81 |
| Eco31I | GGTCTC | 1 cut(s) | 720 |
| Eco47I | GGWCC | 3 cut(s) | 37, 121, 533 |
| Eco52I | CGGCCG | 1 cut(s) | 81 |
| Eco91I | GGTNACC | 1 cut(s) | 347 |
| EcoO65I | GGTNACC | 1 cut(s) | 347 |
| EcoRI | GAATTC | 1 cut(s) | 620 |
| FaeI | CATG | 3 cut(s) | 16, 325, 566 |
| FaqI | GGGAC | 1 cut(s) | 556 |
| FatI | CATG | 3 cut(s) | 12, 321, 562 |
| FauI | CCCGC | 1 cut(s) | 30 |
| FauNDI | CATATG | 1 cut(s) | 470 |
| FbaI | TGATCA | 1 cut(s) | 442 |
| Fnu4HI | GCNGC | 3 cut(s) | 19, 84, 458 |
| Fsp4HI | GCNGC | 3 cut(s) | 19, 84, 458 |
| GlaI | GCGC | 1 cut(s) | 411 |
| GluI | GCNGC | 3 cut(s) | 19, 84, 458 |
| GsaI | CCCAGC | 1 cut(s) | 543 |
| HaeIII | GGCC | 5 cut(s) | 6, 21, 83, 111, 298 |
| HapII | CCGG | 8 cut(s) | 80, 257, 299, 345, 352, 362, 536, 626 |
| HhaI | GCGC | 1 cut(s) | 412 |
| Hin1II | CATG | 3 cut(s) | 16, 325, 566 |
| Hin6I | GCGC | 1 cut(s) | 410 |
| HinP1I | GCGC | 1 cut(s) | 410 |
| HinfI | GANTC | 2 cut(s) | 382, 395 |
| HpaII | CCGG | 8 cut(s) | 80, 257, 299, 345, 352, 362, 536, 626 |
| HphI | GGTGA | 2 cut(s) | 359, 683 |
| Hpy188I | TCNGA | 4 cut(s) | 37, 100, 447, 720 |
| Hpy188III | TCNNGA | 6 cut(s) | 75, 374, 479, 599, 650, 777 |
| Hpy99I | CGWCG | 1 cut(s) | 418 |
| HpyAV | CCTTC | 2 cut(s) | 224, 662 |
| HpyCH4III | ACNGT | 4 cut(s) | 202, 358, 547, 764 |
| HpyCH4IV | ACGT | 2 cut(s) | 416, 773 |
| HpyCH4V | TGCA | 3 cut(s) | 195, 634, 657 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 709 |
| HpyF3I | CTNAG | 3 cut(s) | 426, 588, 640 |
| HpySE526I | ACGT | 2 cut(s) | 416, 773 |
| Hsp92II | CATG | 3 cut(s) | 16, 325, 566 |
| HspAI | GCGC | 1 cut(s) | 410 |
| KroI | GCCGGC | 1 cut(s) | 298 |
| KroNI | GCCGGC | 1 cut(s) | 300 |
| Ksp22I | TGATCA | 1 cut(s) | 442 |
| Kzo9I | GATC | 3 cut(s) | 442, 565, 595 |
| Lsp1109I | GCAGC | 1 cut(s) | 444 |
| LweI | GCATC | 2 cut(s) | 150, 666 |
| MaeII | ACGT | 2 cut(s) | 416, 773 |
| MaeIII | GTNAC | 4 cut(s) | 52, 137, 347, 547 |
| MalI | GATC | 3 cut(s) | 444, 567, 597 |
| MboI | GATC | 3 cut(s) | 442, 565, 595 |
| MboII | GAAGA | 2 cut(s) | 220, 390 |
| MluCI | AATT | 3 cut(s) | 115, 620, 644 |
| MlyI | GAGTC | 1 cut(s) | 389 |
| MroNI | GCCGGC | 1 cut(s) | 298 |
| MseI | TTAA | 1 cut(s) | 239 |
| MslI | CAYNNNNRTG | 2 cut(s) | 576, 694 |
| MspI | CCGG | 8 cut(s) | 80, 257, 299, 345, 352, 362, 536, 626 |
| MspR9I | CCNGG | 2 cut(s) | 258, 626 |
| MvnI | CGCG | 1 cut(s) | 387 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 709 |
| NaeI | GCCGGC | 1 cut(s) | 300 |
| NciI | CCSGG | 2 cut(s) | 258, 626 |
| NdeI | CATATG | 1 cut(s) | 470 |
| NdeII | GATC | 3 cut(s) | 442, 565, 595 |
| NgoMIV | GCCGGC | 1 cut(s) | 298 |
| NlaIII | CATG | 3 cut(s) | 16, 325, 566 |
| NlaIV | GGNNCC | 2 cut(s) | 112, 360 |
| NmuCI | GTSAC | 3 cut(s) | 52, 137, 347 |
| OliI | CACNNNNGTG | 1 cut(s) | 694 |
| PdiI | GCCGGC | 1 cut(s) | 300 |
| PfeI | GAWTC | 1 cut(s) | 382 |
| PfoI | TCCNGGA | 1 cut(s) | 624 |
| PkrI | GCNGC | 3 cut(s) | 20, 85, 459 |
| PleI | GAGTC | 1 cut(s) | 389 |
| PpsI | GAGTC | 1 cut(s) | 389 |
| PshAI | GACNNNNGTC | 2 cut(s) | 59, 126 |
| PspEI | GGTNACC | 1 cut(s) | 347 |
| PspFI | CCCAGC | 1 cut(s) | 539 |
| PspN4I | GGNNCC | 2 cut(s) | 112, 360 |
| PspPI | GGNCC | 6 cut(s) | 4, 20, 37, 110, 121, 533 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 237, 269 |
| RseI | CAYNNNNRTG | 2 cut(s) | 576, 694 |
| SaqAI | TTAA | 1 cut(s) | 239 |
| SatI | GCNGC | 3 cut(s) | 19, 84, 458 |
| Sau3AI | GATC | 3 cut(s) | 442, 565, 595 |
| Sau96I | GGNCC | 6 cut(s) | 4, 20, 37, 110, 121, 533 |
| SchI | GAGTC | 1 cut(s) | 389 |
| ScrFI | CCNGG | 2 cut(s) | 258, 626 |
| SfaNI | GCATC | 2 cut(s) | 150, 666 |
| SinI | GGWCC | 3 cut(s) | 37, 121, 533 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 576, 694 |
| SmlI | CTYRAG | 1 cut(s) | 374 |
| SmoI | CTYRAG | 1 cut(s) | 374 |
| Sse9I | AATT | 3 cut(s) | 115, 620, 644 |
| SsiI | CCGC | 9 cut(s) | 18, 23, 48, 66, 84, 124, 387, 569, 712 |
| StyD4I | CCNGG | 2 cut(s) | 256, 624 |
| TaaI | ACNGT | 4 cut(s) | 202, 358, 547, 764 |
| TaiI | ACGT | 2 cut(s) | 419, 776 |
| TasI | AATT | 3 cut(s) | 115, 620, 644 |
| TauI | GCSGC | 2 cut(s) | 21, 86 |
| TfiI | GAWTC | 1 cut(s) | 382 |
| Tru1I | TTAA | 1 cut(s) | 239 |
| Tru9I | TTAA | 1 cut(s) | 239 |
| TseFI | GTSAC | 3 cut(s) | 52, 137, 347 |
| TseI | GCWGC | 1 cut(s) | 457 |
| Tsp45I | GTSAC | 3 cut(s) | 52, 137, 347 |
| TspGWI | ACGGA | 1 cut(s) | 170 |
| VpaK11BI | GGWCC | 3 cut(s) | 37, 121, 533 |
| XapI | RAATTY | 2 cut(s) | 620, 644 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 696 |