Rh6BG103200

Cell division

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0000528
Physical Location & Seq
Reverse (-)
15970504 .. 15979744
9241 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG103200.1

Sequence Viewer

Length: 393 bp
ATGACGAACCAACGTGAAGGAACAAATAAGAGGGACTTCAGCACGGCGATTCTGGACCGCAAGAAGGCTCCAAATCGCCTTGTTGTCGATGAAGCTGTGGTGGATGACAATTCCACCATCCAACTCTGCCCGGAGACCATGGAGAAGCTCCAGCTCTTTCGTGGCGACACAGTCTTGATCAAGGGAAAGAAGCATAGAGACACAATTTGTATTGCTCTTGCTGATGACACCTGTGAAGAACCAAAGATAAGGATGAACAAGGTTGTGAGGAACAACCTTAGGAAAGAGACTCTTCATTTACTCTGGCAAAGGAACAAAAATGATGAGGAAAATACCAATGGAGAGGAAGAGGCTTACCTTCTTCAAGCTTATTCTTCCTGGTTACTCGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
ko04141 ko05134 map04141 map05134
Pfam Domains
Protein Families
AAA CDC48_2 CDC48_N

Protein Analysis

130

Amino Acids

15.12

Weight (kDa)

5.77

Isoelectric Point (pI)

28.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CDC48_N PF02359 26 - 94 1.4e-16 Cell division protein 48 (CDC48), N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000528)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G49650
fragaria_vesca FvH4_1g18770 FvH4_1g18770 FvH4_7g34230
malus_domestica MD01G1046900.v1.1 MD15G1305400.v1.1 MD16G1282300.v1.1
prunus_persica Prupe.6G211700_v2.0.a1 Prupe.6G211700_v2.0.a1
pyrus_communis pycom01g07280 pycom15g26860 pycom16g25190 pycom16g25200
rosa_chinensis RchiOBHm_Chr1g0351151 RchiOBHm_Chr2g0109641 RchiOBHm_Chr4g0386971 RchiOBHm_Chr4g0413031 RchiOBHm_Chr4g0429541
rosa_laevigata RLG00000007037 RLG00000009264 RLG00000009427 RLG00000015442 RLG00000017752 RLG00000017990 RLG00000022570 RLG00000028427
rosa_multiflora Rmu_sc0000031.1_g000013 Rmu_sc0000332.1_g000058 Rmu_sc0000346.1_g000014 Rmu_sc0000698.1_g000147 Rmu_sc0001152.1_g000047 Rmu_sc0001494.1_g000003 Rmu_sc0002254.1_g000001 Rmu_sc0002531.1_g000001 Rmu_sc0002717.1_g000016 Rmu_sc0002717.1_g000017 Rmu_sc0003220.1_g000024 Rmu_sc0005016.1_g000007 Rmu_sc0005608.1_g000020 Rmu_sc0010686.1_g000003 Rmu_sc0011012.1_g000011 Rmu_sc0021503.1_g000001
rosa_roxburghii Rroxscaffold_2G00082300 Rroxscaffold_2G00099190 Rroxscaffold_2G00129660 Rroxscaffold_2G00134070 Rroxscaffold_3G00236170 Rroxscaffold_5G00346460 Rroxscaffold_7G00156600 Rroxscaffold_7G00205430
rosa_rugosa Rorug01G0267800 Rorug02G0020700 Rorug02G0020700 Rorug02G0161500 Rorug02G0384900 Rorug05G0567000
rosa_samantha Rh1AG062400 Rh1AG132200 Rh1AG231500 Rh1CG126100 Rh1CG184600 Rh1CG215600 Rh1CG237400 Rh2AG213700 Rh2BG068400 Rh2BG224100 Rh2BG239600 Rh2CG069600 Rh2CG216000 Rh2CG585300 Rh2DG067600 Rh2DG219200 Rh4AG177200 Rh5AG509600 Rh5BG290500 Rh5BG328900 Rh5DG300300 Rh5DG340100 Rh6BG103200 Rh7DG421500
rosa_wichuraiana Rw1G006030 Rw1G006580 Rw2G006320 Rw5G004390 Rw5G029130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 58
AcuI CTGAAG 1 cut(s) 22
AfiI CCNNNNNNNGG 1 cut(s) 64
AgsI TTSAA 1 cut(s) 365
AjnI CCWGG 1 cut(s) 377
AluBI AGCT 4 cut(s) 95, 148, 154, 368
AluI AGCT 4 cut(s) 95, 148, 154, 368
Alw26I GTCTC 3 cut(s) 128, 192, 281
AspS9I GGNCC 1 cut(s) 55
AsuC2I CCSGG 1 cut(s) 131
AvaII GGWCC 1 cut(s) 55
AxyI CCTNAGG 1 cut(s) 278
BccI CCATC 1 cut(s) 125
BceAI ACGGC 1 cut(s) 60
BciT130I CCWGG 1 cut(s) 379
BclI TGATCA 1 cut(s) 177
BcnI CCSGG 1 cut(s) 131
BcoDI GTCTC 3 cut(s) 128, 192, 281
Bme1390I CCNGG 2 cut(s) 131, 379
Bme18I GGWCC 1 cut(s) 55
BmgT120I GGNCC 1 cut(s) 55
BmiI GGNNCC 1 cut(s) 69
BmrFI CCNGG 2 cut(s) 131, 379
BpmI CTGGAG 1 cut(s) 134
BpuMI CCSGG 1 cut(s) 131
BsaI GGTCTC 1 cut(s) 128
BsaJI CCNNGG 1 cut(s) 138
Bsc4I CCNNNNNNNGG 1 cut(s) 64
Bse21I CCTNAGG 1 cut(s) 278
BseBI CCWGG 1 cut(s) 379
BseDI CCNNGG 1 cut(s) 138
BseGI GGATG 3 cut(s) 109, 117, 258
BseLI CCNNNNNNNGG 1 cut(s) 64
BsiSI CCGG 1 cut(s) 131
BslFI GGGAC 1 cut(s) 47
BslI CCNNNNNNNGG 1 cut(s) 64
BsmAI GTCTC 3 cut(s) 128, 192, 281
BsmFI GGGAC 1 cut(s) 47
Bso31I GGTCTC 1 cut(s) 128
Bsp143I GATC 1 cut(s) 177
Bsp19I CCATGG 1 cut(s) 138
BspACI CCGC 1 cut(s) 58
BspLI GGNNCC 1 cut(s) 69
BspTNI GGTCTC 1 cut(s) 128
BssECI CCNNGG 1 cut(s) 138
BssMI GATC 1 cut(s) 177
BssT1I CCWWGG 1 cut(s) 138
Bst2UI CCWGG 1 cut(s) 379
Bst4CI ACNGT 1 cut(s) 172
Bst6I CTCTTC 2 cut(s) 297, 342
BstDEI CTNAG 1 cut(s) 278
BstDSI CCRYGG 1 cut(s) 138
BstF5I GGATG 3 cut(s) 109, 117, 258
BstKTI GATC 1 cut(s) 180
BstMAI GTCTC 3 cut(s) 128, 192, 281
BstMBI GATC 1 cut(s) 177
BstNI CCWGG 1 cut(s) 379
BstSCI CCNGG 2 cut(s) 129, 377
Bsu36I CCTNAGG 1 cut(s) 278
BtgI CCRYGG 1 cut(s) 138
BtsCI GGATG 3 cut(s) 109, 117, 258
Cfr13I GGNCC 1 cut(s) 55
CviAII CATG 1 cut(s) 139
CviJI RGCY 6 cut(s) 68, 95, 148, 154, 353, 368
CviKI_1 RGCY 6 cut(s) 68, 95, 148, 154, 353, 368
DdeI CTNAG 1 cut(s) 278
DpnI GATC 1 cut(s) 179
DpnII GATC 1 cut(s) 177
Eam1104I CTCTTC 2 cut(s) 297, 342
EarI CTCTTC 2 cut(s) 297, 342
Eco130I CCWWGG 1 cut(s) 138
Eco31I GGTCTC 1 cut(s) 128
Eco47I GGWCC 1 cut(s) 55
Eco57I CTGAAG 1 cut(s) 22
Eco81I CCTNAGG 1 cut(s) 278
EcoRII CCWGG 1 cut(s) 377
EcoT14I CCWWGG 1 cut(s) 138
ErhI CCWWGG 1 cut(s) 138
FaeI CATG 1 cut(s) 142
FaiI YATR 2 cut(s) 140, 195
FalI AAGNNNNNCTT 4 cut(s) 20, 52, 276, 308
FaqI GGGAC 1 cut(s) 47
FatI CATG 1 cut(s) 138
FbaI TGATCA 1 cut(s) 177
FokI GGATG 3 cut(s) 104, 116, 265
GsuI CTGGAG 1 cut(s) 134
HapII CCGG 1 cut(s) 131
Hin1II CATG 1 cut(s) 142
HindIII AAGCTT 1 cut(s) 366
HinfI GANTC 2 cut(s) 49, 289
HpaII CCGG 1 cut(s) 131
Hpy188III TCNNGA 2 cut(s) 53, 175
HpyAV CCTTC 3 cut(s) 11, 58, 368
HpyCH4III ACNGT 1 cut(s) 172
HpyCH4IV ACGT 1 cut(s) 13
HpyF3I CTNAG 1 cut(s) 278
HpySE526I ACGT 1 cut(s) 13
Hsp92II CATG 1 cut(s) 142
Ksp22I TGATCA 1 cut(s) 177
Kzo9I GATC 1 cut(s) 177
LmnI GCTCC 2 cut(s) 73, 153
LpnPI CCDG 6 cut(s) 38, 144, 164, 244, 289, 364
MaeII ACGT 1 cut(s) 13
MaeIII GTNAC 1 cut(s) 381
MalI GATC 1 cut(s) 179
MboI GATC 1 cut(s) 177
MboII GAAGA 5 cut(s) 248, 284, 353, 359, 366
MluCI AATT 2 cut(s) 109, 204
MlyI GAGTC 1 cut(s) 283
MmeI TCCRAC 1 cut(s) 145
MnlI CCTC 5 cut(s) 24, 261, 319, 337, 343
MspI CCGG 1 cut(s) 131
MspR9I CCNGG 2 cut(s) 131, 379
MvaI CCWGG 1 cut(s) 379
NciI CCSGG 1 cut(s) 131
NcoI CCATGG 1 cut(s) 138
NdeII GATC 1 cut(s) 177
NlaIII CATG 1 cut(s) 142
NlaIV GGNNCC 1 cut(s) 69
PfeI GAWTC 1 cut(s) 49
PflFI GACNNNGTC 1 cut(s) 170
PleI GAGTC 1 cut(s) 283
PpsI GAGTC 1 cut(s) 283
Psp6I CCWGG 1 cut(s) 377
PspGI CCWGG 1 cut(s) 377
PspN4I GGNNCC 1 cut(s) 69
PspPI GGNCC 1 cut(s) 55
PsyI GACNNNGTC 1 cut(s) 170
Sau3AI GATC 1 cut(s) 177
Sau96I GGNCC 1 cut(s) 55
SchI GAGTC 1 cut(s) 283
ScrFI CCNGG 2 cut(s) 131, 379
SetI ASST 9 cut(s) 16, 97, 150, 156, 233, 264, 279, 360, 370
SinI GGWCC 1 cut(s) 55
Sse9I AATT 2 cut(s) 109, 204
SsiI CCGC 1 cut(s) 58
StyD4I CCNGG 2 cut(s) 129, 377
StyI CCWWGG 1 cut(s) 138
TaaI ACNGT 1 cut(s) 172
TaiI ACGT 1 cut(s) 16
TaqI TCGA 2 cut(s) 87, 387
TasI AATT 2 cut(s) 109, 204
TfiI GAWTC 1 cut(s) 49
TspDTI ATGAA 3 cut(s) 105, 269, 284
Tth111I GACNNNGTC 1 cut(s) 170
VpaK11BI GGWCC 1 cut(s) 55
XcmI CCANNNNNNNNNTGG 1 cut(s) 158
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.