Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001494.1

Orthogroup ID

OG0000528

Physical Location & Seq

Genomic Coordinates Forward (+)

12298 .. 13405

Gene Structure 1108 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001494.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 219 bp

atgtcgtgtggaggctttgtggtgagagaaattcttgctggggaacctattcatgagaatatagagctctatgaaaattacactagtgggaccaagagggatttcagcactgcgattctcgagcggaagaaggcagtaaatgtcctcgtcgtcgatgaggccatctacgatgacaactccgtcgtcactctccaccctgagaccatggagaagctttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005737 GO:0005794 GO:0005829 GO:0005886 GO:0008150 GO:0009893 GO:0009894 GO:0009896 GO:0010035 GO:0010038 GO:0010604 GO:0012505 GO:0016020 GO:0019222 GO:0031974 GO:0031981 GO:0042176 GO:0042221 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045732 GO:0046686 GO:0048518 GO:0050789 GO:0050896 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0065007 GO:0070013 GO:0071944 GO:0080090

KEGG Pathways

Metabolic & Signaling

ko04141 ko05134 map04141 map05134

Pfam Domains

Protein Families

AAA CDC48_2 CDC48_N Vps4_C

Protein Analysis

72

Amino Acids

8.1

Weight (kDa)

4.69

Isoelectric Point (pI)

46.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000528)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49650
fragaria_vesca	FvH4_1g18770 FvH4_1g18770 FvH4_7g34230
malus_domestica	MD01G1046900.v1.1 MD15G1305400.v1.1 MD16G1282300.v1.1
prunus_persica	Prupe.6G211700_v2.0.a1 Prupe.6G211700_v2.0.a1
pyrus_communis	pycom01g07280 pycom15g26860 pycom16g25190 pycom16g25200
rosa_chinensis	RchiOBHm_Chr1g0351151 RchiOBHm_Chr2g0109641 RchiOBHm_Chr4g0386971 RchiOBHm_Chr4g0413031 RchiOBHm_Chr4g0429541
rosa_laevigata	RLG00000007037 RLG00000009264 RLG00000009427 RLG00000015442 RLG00000017752 RLG00000017990 RLG00000022570 RLG00000028427
rosa_multiflora	Rmu_sc0000031.1_g000013 Rmu_sc0000332.1_g000058 Rmu_sc0000346.1_g000014 Rmu_sc0000698.1_g000147 Rmu_sc0001152.1_g000047 Rmu_sc0001494.1_g000003 Rmu_sc0002254.1_g000001 Rmu_sc0002531.1_g000001 Rmu_sc0002717.1_g000016 Rmu_sc0002717.1_g000017 Rmu_sc0003220.1_g000024 Rmu_sc0005016.1_g000007 Rmu_sc0005608.1_g000020 Rmu_sc0010686.1_g000003 Rmu_sc0011012.1_g000011 Rmu_sc0021503.1_g000001
rosa_roxburghii	Rroxscaffold_2G00082300 Rroxscaffold_2G00099190 Rroxscaffold_2G00129660 Rroxscaffold_2G00134070 Rroxscaffold_3G00236170 Rroxscaffold_5G00346460 Rroxscaffold_7G00156600 Rroxscaffold_7G00205430
rosa_rugosa	Rorug01G0267800 Rorug02G0020700 Rorug02G0020700 Rorug02G0161500 Rorug02G0384900 Rorug05G0567000
rosa_samantha	Rh1AG062400 Rh1AG132200 Rh1AG231500 Rh1CG126100 Rh1CG184600 Rh1CG215600 Rh1CG237400 Rh2AG213700 Rh2BG068400 Rh2BG224100 Rh2BG239600 Rh2CG069600 Rh2CG216000 Rh2CG585300 Rh2DG067600 Rh2DG219200 Rh4AG177200 Rh5AG509600 Rh5BG290500 Rh5BG328900 Rh5DG300300 Rh5DG340100 Rh6BG103200 Rh7DG421500
rosa_wichuraiana	Rw1G006030 Rw1G006580 Rw2G006320 Rw5G004390 Rw5G029130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	179
AccBSI	CCGCTC	1 cut(s)	124
AciI	CCGC	1 cut(s)	124
AcsI	RAATTY	1 cut(s)	30
AhlI	ACTAGT	1 cut(s)	83
AjuI	GAANNNNNNNTTGG	2 cut(s)	86, 118
AluBI	AGCT	2 cut(s)	67, 214
AluI	AGCT	2 cut(s)	67, 214
Alw21I	GWGCWC	1 cut(s)	69
Alw26I	GTCTC	1 cut(s)	194
Ama87I	CYCGRG	1 cut(s)	119
AoxI	GGCC	1 cut(s)	159
ApoI	RAATTY	1 cut(s)	30
Asp700I	GAANNNNTTC	1 cut(s)	48
AspS9I	GGNCC	1 cut(s)	90
AsuHPI	GGTGA	1 cut(s)	34
AvaI	CYCGRG	1 cut(s)	119
AvaII	GGWCC	1 cut(s)	90
BanII	GRGCYC	1 cut(s)	69
Bbv12I	GWGCWC	1 cut(s)	69
BccI	CCATC	1 cut(s)	170
BcoDI	GTCTC	1 cut(s)	194
BcuI	ACTAGT	1 cut(s)	83
BfaI	CTAG	1 cut(s)	84
Bme18I	GGWCC	1 cut(s)	90
BmeT110I	CYCGRG	1 cut(s)	119
BmgT120I	GGNCC	1 cut(s)	90
BmiI	GGNNCC	2 cut(s)	45, 91
BsaI	GGTCTC	1 cut(s)	194
BsaJI	CCNNGG	1 cut(s)	204
BsaXI	ACNNNNNCTCC	1 cut(s)	33
BseDI	CCNNGG	1 cut(s)	204
BseMII	CTCAG	1 cut(s)	189
BseYI	CCCAGC	1 cut(s)	38
BshFI	GGCC	1 cut(s)	161
BsiHKAI	GWGCWC	1 cut(s)	69
BsiHKCI	CYCGRG	1 cut(s)	119
BslFI	GGGAC	1 cut(s)	103
BsmAI	GTCTC	1 cut(s)	194
BsmFI	GGGAC	1 cut(s)	103
BsnI	GGCC	1 cut(s)	161
Bso31I	GGTCTC	1 cut(s)	194
BsoBI	CYCGRG	1 cut(s)	119
Bsp1286I	GDGCHC	1 cut(s)	69
Bsp19I	CCATGG	1 cut(s)	204
BspACI	CCGC	1 cut(s)	124
BspANI	GGCC	1 cut(s)	161
BspCNI	CTCAG	1 cut(s)	190
BspHI	TCATGA	1 cut(s)	52
BspLI	GGNNCC	2 cut(s)	45, 91
BspTNI	GGTCTC	1 cut(s)	194
BsrBI	CCGCTC	1 cut(s)	124
BssECI	CCNNGG	1 cut(s)	204
BssT1I	CCWWGG	1 cut(s)	204
BstDEI	CTNAG	1 cut(s)	198
BstDSI	CCRYGG	1 cut(s)	204
BstMAI	GTCTC	1 cut(s)	194
BsuRI	GGCC	1 cut(s)	161
BtgI	CCRYGG	1 cut(s)	204
BtsI	GCAGTG	1 cut(s)	108
BtsIMutI	CAGTG	1 cut(s)	108
CciI	TCATGA	1 cut(s)	52
Cfr13I	GGNCC	1 cut(s)	90
CviAII	CATG	2 cut(s)	53, 205
CviJI	RGCY	4 cut(s)	15, 67, 161, 214
CviKI_1	RGCY	4 cut(s)	15, 67, 161, 214
DdeI	CTNAG	1 cut(s)	198
DrdI	GACNNNNNNGTC	1 cut(s)	179
DseDI	GACNNNNNNGTC	1 cut(s)	179
Ecl136II	GAGCTC	1 cut(s)	67
Eco130I	CCWWGG	1 cut(s)	204
Eco24I	GRGCYC	1 cut(s)	69
Eco31I	GGTCTC	1 cut(s)	194
Eco47I	GGWCC	1 cut(s)	90
Eco53kI	GAGCTC	1 cut(s)	67
Eco88I	CYCGRG	1 cut(s)	119
EcoICRI	GAGCTC	1 cut(s)	67
EcoT14I	CCWWGG	1 cut(s)	204
EcoT38I	GRGCYC	1 cut(s)	69
ErhI	CCWWGG	1 cut(s)	204
FaeI	CATG	2 cut(s)	56, 208
FaiI	YATR	4 cut(s)	54, 62, 72, 206
FaqI	GGGAC	1 cut(s)	103
FatI	CATG	2 cut(s)	52, 204
FriOI	GRGCYC	1 cut(s)	69
FspBI	CTAG	1 cut(s)	84
GsaI	CCCAGC	1 cut(s)	42
HaeIII	GGCC	1 cut(s)	161
Hin1II	CATG	2 cut(s)	56, 208
HindIII	AAGCTT	1 cut(s)	212
HinfI	GANTC	1 cut(s)	115
HphI	GGTGA	1 cut(s)	34
Hpy188III	TCNNGA	2 cut(s)	53, 119
Hpy99I	CGWCG	3 cut(s)	152, 155, 185
HpyAV	CCTTC	1 cut(s)	124
HpyF3I	CTNAG	1 cut(s)	198
Hsp92II	CATG	2 cut(s)	56, 208
LpnPI	CCDG	2 cut(s)	24, 210
MaeI	CTAG	1 cut(s)	84
MaeIII	GTNAC	1 cut(s)	184
MbiI	CCGCTC	1 cut(s)	124
MboII	GAAGA	1 cut(s)	139
MhlI	GDGCHC	1 cut(s)	69
MluCI	AATT	2 cut(s)	30, 76
MnlI	CCTC	4 cut(s)	5, 90, 151, 155
MroXI	GAANNNNTTC	1 cut(s)	48
NcoI	CCATGG	1 cut(s)	204
NlaIII	CATG	2 cut(s)	56, 208
NlaIV	GGNNCC	2 cut(s)	45, 91
NmuCI	GTSAC	1 cut(s)	184
PaeR7I	CTCGAG	1 cut(s)	119
PagI	TCATGA	1 cut(s)	52
PdmI	GAANNNNTTC	1 cut(s)	48
PfeI	GAWTC	1 cut(s)	115
Psp124BI	GAGCTC	1 cut(s)	69
PspFI	CCCAGC	1 cut(s)	38
PspN4I	GGNNCC	2 cut(s)	45, 91
PspPI	GGNCC	1 cut(s)	90
SacI	GAGCTC	1 cut(s)	69
Sau96I	GGNCC	1 cut(s)	90
SduI	GDGCHC	1 cut(s)	69
SetI	ASST	3 cut(s)	49, 69, 216
Sfr274I	CTCGAG	1 cut(s)	119
SinI	GGWCC	1 cut(s)	90
SlaI	CTCGAG	1 cut(s)	119
SmlI	CTYRAG	1 cut(s)	119
SmoI	CTYRAG	1 cut(s)	119
SpeI	ACTAGT	1 cut(s)	83
Sse9I	AATT	2 cut(s)	30, 76
SsiI	CCGC	1 cut(s)	124
SspMI	CTAG	1 cut(s)	84
SstI	GAGCTC	1 cut(s)	69
StyI	CCWWGG	1 cut(s)	204
TaqI	TCGA	2 cut(s)	120, 153
TasI	AATT	2 cut(s)	30, 76
TfiI	GAWTC	1 cut(s)	115
TscAI	CASTG	1 cut(s)	115
TseFI	GTSAC	1 cut(s)	184
Tsp45I	GTSAC	1 cut(s)	184
TspDTI	ATGAA	2 cut(s)	41, 87
TspGWI	ACGGA	1 cut(s)	169
TspRI	CASTG	1 cut(s)	115
VpaK11BI	GGWCC	1 cut(s)	90
XapI	RAATTY	1 cut(s)	30
XhoI	CTCGAG	1 cut(s)	119
XmnI	GAANNNNTTC	1 cut(s)	48
XspI	CTAG	1 cut(s)	84

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.