Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002254.1

Orthogroup ID

OG0000528

Physical Location & Seq

Genomic Coordinates Forward (+)

1160 .. 1480

Gene Structure 321 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002254.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 207 bp

atgaccgataaagctgaatcgtccgaccctaaggggaccaagagggatttcagctttgcgattctcgagcggaagaaggcagcgaatcgccttgtcgtcgatgaggccatcaacgatgtcaactttgtcatcgcgctccaccttgaaaccatggagaagctccagctctttaggggcgacacaatcctcatcaaggtgcgattttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005737 GO:0005794 GO:0005829 GO:0005886 GO:0008150 GO:0009893 GO:0009894 GO:0009896 GO:0010035 GO:0010038 GO:0010604 GO:0012505 GO:0016020 GO:0019222 GO:0031974 GO:0031981 GO:0042176 GO:0042221 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045732 GO:0046686 GO:0048518 GO:0050789 GO:0050896 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0065007 GO:0070013 GO:0071944 GO:0080090

KEGG Pathways

Metabolic & Signaling

ko04141 ko05134 map04141 map05134

Pfam Domains

Protein Families

AAA CDC48_2 CDC48_N Vps4_C

Protein Analysis

68

Amino Acids

7.79

Weight (kDa)

8.09

Isoelectric Point (pI)

13.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000528)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49650
fragaria_vesca	FvH4_1g18770 FvH4_1g18770 FvH4_7g34230
malus_domestica	MD01G1046900.v1.1 MD15G1305400.v1.1 MD16G1282300.v1.1
prunus_persica	Prupe.6G211700_v2.0.a1 Prupe.6G211700_v2.0.a1
pyrus_communis	pycom01g07280 pycom15g26860 pycom16g25190 pycom16g25200
rosa_chinensis	RchiOBHm_Chr1g0351151 RchiOBHm_Chr2g0109641 RchiOBHm_Chr4g0386971 RchiOBHm_Chr4g0413031 RchiOBHm_Chr4g0429541
rosa_laevigata	RLG00000007037 RLG00000009264 RLG00000009427 RLG00000015442 RLG00000017752 RLG00000017990 RLG00000022570 RLG00000028427
rosa_multiflora	Rmu_sc0000031.1_g000013 Rmu_sc0000332.1_g000058 Rmu_sc0000346.1_g000014 Rmu_sc0000698.1_g000147 Rmu_sc0001152.1_g000047 Rmu_sc0001494.1_g000003 Rmu_sc0002254.1_g000001 Rmu_sc0002531.1_g000001 Rmu_sc0002717.1_g000016 Rmu_sc0002717.1_g000017 Rmu_sc0003220.1_g000024 Rmu_sc0005016.1_g000007 Rmu_sc0005608.1_g000020 Rmu_sc0010686.1_g000003 Rmu_sc0011012.1_g000011 Rmu_sc0021503.1_g000001
rosa_roxburghii	Rroxscaffold_2G00082300 Rroxscaffold_2G00099190 Rroxscaffold_2G00129660 Rroxscaffold_2G00134070 Rroxscaffold_3G00236170 Rroxscaffold_5G00346460 Rroxscaffold_7G00156600 Rroxscaffold_7G00205430
rosa_rugosa	Rorug01G0267800 Rorug02G0020700 Rorug02G0020700 Rorug02G0161500 Rorug02G0384900 Rorug05G0567000
rosa_samantha	Rh1AG062400 Rh1AG132200 Rh1AG231500 Rh1CG126100 Rh1CG184600 Rh1CG215600 Rh1CG237400 Rh2AG213700 Rh2BG068400 Rh2BG224100 Rh2BG239600 Rh2CG069600 Rh2CG216000 Rh2CG585300 Rh2DG067600 Rh2DG219200 Rh4AG177200 Rh5AG509600 Rh5BG290500 Rh5BG328900 Rh5DG300300 Rh5DG340100 Rh6BG103200 Rh7DG421500
rosa_wichuraiana	Rw1G006030 Rw1G006580 Rw2G006320 Rw5G004390 Rw5G029130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	70
AccII	CGCG	1 cut(s)	134
AciI	CCGC	1 cut(s)	70
AfiI	CCNNNNNNNGG	1 cut(s)	193
AgsI	TTSAA	1 cut(s)	146
AjuI	GAANNNNNNNTTGG	2 cut(s)	32, 64
AluBI	AGCT	4 cut(s)	14, 54, 160, 166
AluI	AGCT	4 cut(s)	14, 54, 160, 166
Ama87I	CYCGRG	1 cut(s)	65
AoxI	GGCC	1 cut(s)	105
ApeKI	GCWGC	1 cut(s)	80
AspLEI	GCGC	1 cut(s)	136
AspS9I	GGNCC	1 cut(s)	36
AvaI	CYCGRG	1 cut(s)	65
AvaII	GGWCC	1 cut(s)	36
AxyI	CCTNAGG	1 cut(s)	30
BbvI	GCAGC	1 cut(s)	92
BccI	CCATC	1 cut(s)	116
BisI	GCNGC	1 cut(s)	81
BlsI	GCNGC	1 cut(s)	82
Bme18I	GGWCC	1 cut(s)	36
BmeT110I	CYCGRG	1 cut(s)	65
BmgT120I	GGNCC	1 cut(s)	36
BmiI	GGNNCC	1 cut(s)	37
BpmI	CTGGAG	1 cut(s)	146
BsaJI	CCNNGG	1 cut(s)	150
Bsc4I	CCNNNNNNNGG	1 cut(s)	193
Bse21I	CCTNAGG	1 cut(s)	30
BseDI	CCNNGG	1 cut(s)	150
BseLI	CCNNNNNNNGG	1 cut(s)	193
BseXI	GCAGC	1 cut(s)	92
Bsh1236I	CGCG	1 cut(s)	134
BshFI	GGCC	1 cut(s)	107
BsiHKCI	CYCGRG	1 cut(s)	65
BslFI	GGGAC	1 cut(s)	49
BslI	CCNNNNNNNGG	1 cut(s)	193
BsmFI	GGGAC	1 cut(s)	49
BsnI	GGCC	1 cut(s)	107
BsoBI	CYCGRG	1 cut(s)	65
Bsp19I	CCATGG	1 cut(s)	150
BspACI	CCGC	1 cut(s)	70
BspANI	GGCC	1 cut(s)	107
BspFNI	CGCG	1 cut(s)	134
BspLI	GGNNCC	1 cut(s)	37
BsrBI	CCGCTC	1 cut(s)	70
BssECI	CCNNGG	1 cut(s)	150
BssT1I	CCWWGG	1 cut(s)	150
BstDEI	CTNAG	1 cut(s)	30
BstDSI	CCRYGG	1 cut(s)	150
BstENI	CCTNNNNNAGG	1 cut(s)	191
BstFNI	CGCG	1 cut(s)	134
BstHHI	GCGC	1 cut(s)	136
BstUI	CGCG	1 cut(s)	134
BstV1I	GCAGC	1 cut(s)	92
Bsu36I	CCTNAGG	1 cut(s)	30
BsuRI	GGCC	1 cut(s)	107
BtgI	CCRYGG	1 cut(s)	150
BtgZI	GCGATG	1 cut(s)	115
CfoI	GCGC	1 cut(s)	136
Cfr13I	GGNCC	1 cut(s)	36
CviAII	CATG	1 cut(s)	151
CviJI	RGCY	5 cut(s)	14, 54, 107, 160, 166
CviKI_1	RGCY	5 cut(s)	14, 54, 107, 160, 166
DdeI	CTNAG	1 cut(s)	30
Eco130I	CCWWGG	1 cut(s)	150
Eco47I	GGWCC	1 cut(s)	36
Eco81I	CCTNAGG	1 cut(s)	30
Eco88I	CYCGRG	1 cut(s)	65
EcoNI	CCTNNNNNAGG	1 cut(s)	191
EcoT14I	CCWWGG	1 cut(s)	150
ErhI	CCWWGG	1 cut(s)	150
FaeI	CATG	1 cut(s)	154
FaiI	YATR	1 cut(s)	152
FaqI	GGGAC	1 cut(s)	49
FatI	CATG	1 cut(s)	150
Fnu4HI	GCNGC	1 cut(s)	81
Fsp4HI	GCNGC	1 cut(s)	81
GlaI	GCGC	1 cut(s)	135
GluI	GCNGC	1 cut(s)	81
GsuI	CTGGAG	1 cut(s)	146
HaeIII	GGCC	1 cut(s)	107
HhaI	GCGC	1 cut(s)	136
Hin1II	CATG	1 cut(s)	154
Hin6I	GCGC	1 cut(s)	134
HinP1I	GCGC	1 cut(s)	134
HincII	GTYRAC	1 cut(s)	121
HindII	GTYRAC	1 cut(s)	121
HinfI	GANTC	3 cut(s)	17, 61, 85
Hpy166II	GTNNAC	1 cut(s)	121
Hpy188I	TCNGA	1 cut(s)	25
Hpy188III	TCNNGA	1 cut(s)	65
Hpy8I	GTNNAC	1 cut(s)	121
Hpy99I	CGWCG	1 cut(s)	101
HpyAV	CCTTC	1 cut(s)	70
HpyF3I	CTNAG	1 cut(s)	30
Hsp92II	CATG	1 cut(s)	154
HspAI	GCGC	1 cut(s)	134
LmnI	GCTCC	2 cut(s)	141, 165
LpnPI	CCDG	1 cut(s)	176
Lsp1109I	GCAGC	1 cut(s)	92
MbiI	CCGCTC	1 cut(s)	70
MboII	GAAGA	1 cut(s)	85
MmeI	TCCRAC	1 cut(s)	48
MnlI	CCTC	3 cut(s)	36, 97, 197
MslI	CAYNNNNRTG	1 cut(s)	194
MvnI	CGCG	1 cut(s)	134
NcoI	CCATGG	1 cut(s)	150
NlaIII	CATG	1 cut(s)	154
NlaIV	GGNNCC	1 cut(s)	37
PaeR7I	CTCGAG	1 cut(s)	65
PfeI	GAWTC	3 cut(s)	17, 61, 85
PkrI	GCNGC	1 cut(s)	82
PspN4I	GGNNCC	1 cut(s)	37
PspPI	GGNCC	1 cut(s)	36
RseI	CAYNNNNRTG	1 cut(s)	194
SatI	GCNGC	1 cut(s)	81
Sau96I	GGNCC	1 cut(s)	36
SetI	ASST	6 cut(s)	16, 56, 144, 162, 168, 198
Sfr274I	CTCGAG	1 cut(s)	65
SgeI	CNNG	8 cut(s)	52, 77, 79, 104, 145, 155, 163, 175
SinI	GGWCC	1 cut(s)	36
SlaI	CTCGAG	1 cut(s)	65
SmiMI	CAYNNNNRTG	1 cut(s)	194
SmlI	CTYRAG	1 cut(s)	65
SmoI	CTYRAG	1 cut(s)	65
SsiI	CCGC	1 cut(s)	70
StyI	CCWWGG	1 cut(s)	150
TaqI	TCGA	2 cut(s)	66, 99
TaqII	GACCGA	1 cut(s)	20
TfiI	GAWTC	3 cut(s)	17, 61, 85
TseI	GCWGC	1 cut(s)	80
VpaK11BI	GGWCC	1 cut(s)	36
XagI	CCTNNNNNAGG	1 cut(s)	191
XhoI	CTCGAG	1 cut(s)	65

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.