Rmu_sc0021503.1_g000001
ERF Family

Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0021503.1
Physical Location & Seq
Forward (+)
1 .. 470
470 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0021503.1_g000001.1.cds

Sequence Viewer

Length: 244 bp
tggtaaaacatatacaatggtggggacacagaatgatcctgggctcatggttctcagtttgcatacaatatttgatatgataaaaaaggacaagagctctgatgaatttgaagttacctgctcctatcttgaagtctataacgaagttatctatgatttgcttgaaaagtcatccggccatttggaactcagagaggatccagagcaaggaatcattgttgatggcctcaacttggccacttag

Protein Analysis

80

Amino Acids

9.0

Weight (kDa)

4.34

Isoelectric Point (pI)

14.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000528)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G49650
fragaria_vesca FvH4_1g18770 FvH4_1g18770 FvH4_7g34230
malus_domestica MD01G1046900.v1.1 MD15G1305400.v1.1 MD16G1282300.v1.1
prunus_persica Prupe.6G211700_v2.0.a1 Prupe.6G211700_v2.0.a1
pyrus_communis pycom01g07280 pycom15g26860 pycom16g25190 pycom16g25200
rosa_chinensis RchiOBHm_Chr1g0351151 RchiOBHm_Chr2g0109641 RchiOBHm_Chr4g0386971 RchiOBHm_Chr4g0413031 RchiOBHm_Chr4g0429541
rosa_laevigata RLG00000007037 RLG00000009264 RLG00000009427 RLG00000015442 RLG00000017752 RLG00000017990 RLG00000022570 RLG00000028427
rosa_multiflora Rmu_sc0000031.1_g000013 Rmu_sc0000332.1_g000058 Rmu_sc0000346.1_g000014 Rmu_sc0000698.1_g000147 Rmu_sc0001152.1_g000047 Rmu_sc0001494.1_g000003 Rmu_sc0002254.1_g000001 Rmu_sc0002531.1_g000001 Rmu_sc0002717.1_g000016 Rmu_sc0002717.1_g000017 Rmu_sc0003220.1_g000024 Rmu_sc0005016.1_g000007 Rmu_sc0005608.1_g000020 Rmu_sc0010686.1_g000003 Rmu_sc0011012.1_g000011 Rmu_sc0021503.1_g000001
rosa_roxburghii Rroxscaffold_2G00082300 Rroxscaffold_2G00099190 Rroxscaffold_2G00129660 Rroxscaffold_2G00134070 Rroxscaffold_3G00236170 Rroxscaffold_5G00346460 Rroxscaffold_7G00156600 Rroxscaffold_7G00205430
rosa_rugosa Rorug01G0267800 Rorug02G0020700 Rorug02G0020700 Rorug02G0161500 Rorug02G0384900 Rorug05G0567000
rosa_samantha Rh1AG062400 Rh1AG132200 Rh1AG231500 Rh1CG126100 Rh1CG184600 Rh1CG215600 Rh1CG237400 Rh2AG213700 Rh2BG068400 Rh2BG224100 Rh2BG239600 Rh2CG069600 Rh2CG216000 Rh2CG585300 Rh2DG067600 Rh2DG219200 Rh4AG177200 Rh5AG509600 Rh5BG290500 Rh5BG328900 Rh5DG300300 Rh5DG340100 Rh6BG103200 Rh7DG421500
rosa_wichuraiana Rw1G006030 Rw1G006580 Rw2G006320 Rw5G004390 Rw5G029130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 126
AclWI GGATC 3 cut(s) 30, 192, 205
AcoI YGGCCR 2 cut(s) 176, 235
AcsI RAATTY 1 cut(s) 105
AfiI CCNNNNNNNGG 2 cut(s) 207, 233
AgsI TTSAA 3 cut(s) 111, 132, 165
AjnI CCWGG 1 cut(s) 38
AluBI AGCT 1 cut(s) 97
AluI AGCT 1 cut(s) 97
Alw21I GWGCWC 1 cut(s) 99
AlwI GGATC 3 cut(s) 30, 192, 205
AoxI GGCC 3 cut(s) 176, 224, 235
ApoI RAATTY 1 cut(s) 105
BalI TGGCCA 1 cut(s) 237
BamHI GGATCC 1 cut(s) 197
BanII GRGCYC 2 cut(s) 46, 99
Bbv12I GWGCWC 1 cut(s) 99
BccI CCATC 1 cut(s) 216
BciT130I CCWGG 1 cut(s) 40
BfuAI ACCTGC 1 cut(s) 126
Bme1390I CCNGG 1 cut(s) 40
BmiI GGNNCC 1 cut(s) 199
BmrFI CCNGG 1 cut(s) 40
BsaJI CCNNGG 1 cut(s) 39
Bsc4I CCNNNNNNNGG 2 cut(s) 207, 233
BseBI CCWGG 1 cut(s) 40
BseDI CCNNGG 1 cut(s) 39
BseGI GGATG 1 cut(s) 171
BseLI CCNNNNNNNGG 2 cut(s) 207, 233
BseMII CTCAG 2 cut(s) 68, 203
BshFI GGCC 3 cut(s) 178, 226, 237
BsiHKAI GWGCWC 1 cut(s) 99
BsiSI CCGG 1 cut(s) 175
BslFI GGGAC 1 cut(s) 38
BslI CCNNNNNNNGG 2 cut(s) 207, 233
BsmFI GGGAC 1 cut(s) 38
BsnI GGCC 3 cut(s) 178, 226, 237
Bsp1286I GDGCHC 2 cut(s) 46, 99
Bsp143I GATC 2 cut(s) 35, 197
BspANI GGCC 3 cut(s) 178, 226, 237
BspCNI CTCAG 2 cut(s) 67, 202
BspLI GGNNCC 1 cut(s) 199
BspMI ACCTGC 1 cut(s) 126
BspPI GGATC 3 cut(s) 30, 192, 205
BssECI CCNNGG 1 cut(s) 39
BssMI GATC 2 cut(s) 35, 197
Bst2UI CCWGG 1 cut(s) 40
BstDEI CTNAG 3 cut(s) 54, 189, 241
BstF5I GGATG 1 cut(s) 171
BstKTI GATC 2 cut(s) 38, 200
BstMBI GATC 2 cut(s) 35, 197
BstNI CCWGG 1 cut(s) 40
BstSCI CCNGG 1 cut(s) 38
BstX2I RGATCY 1 cut(s) 197
BstYI RGATCY 1 cut(s) 197
BsuRI GGCC 3 cut(s) 178, 226, 237
BtsCI GGATG 1 cut(s) 171
BveI ACCTGC 1 cut(s) 126
CviAII CATG 1 cut(s) 47
CviJI RGCY 5 cut(s) 44, 97, 178, 226, 237
CviKI_1 RGCY 5 cut(s) 44, 97, 178, 226, 237
DdeI CTNAG 3 cut(s) 54, 189, 241
DpnI GATC 2 cut(s) 37, 199
DpnII GATC 2 cut(s) 35, 197
EaeI YGGCCR 2 cut(s) 176, 235
Ecl136II GAGCTC 1 cut(s) 97
Eco24I GRGCYC 2 cut(s) 46, 99
Eco53kI GAGCTC 1 cut(s) 97
EcoICRI GAGCTC 1 cut(s) 97
EcoRII CCWGG 1 cut(s) 38
EcoT38I GRGCYC 2 cut(s) 46, 99
FaeI CATG 1 cut(s) 50
FaiI YATR 7 cut(s) 11, 13, 48, 64, 78, 139, 154
FaqI GGGAC 1 cut(s) 38
FatI CATG 1 cut(s) 46
FokI GGATG 1 cut(s) 158
FriOI GRGCYC 2 cut(s) 46, 99
HaeIII GGCC 3 cut(s) 178, 226, 237
HapII CCGG 1 cut(s) 175
Hin1II CATG 1 cut(s) 50
HinfI GANTC 1 cut(s) 211
HpaII CCGG 1 cut(s) 175
Hpy188I TCNGA 2 cut(s) 101, 192
Hpy188III TCNNGA 2 cut(s) 129, 201
HpyCH4V TGCA 1 cut(s) 62
HpyF3I CTNAG 3 cut(s) 54, 189, 241
Hsp92II CATG 1 cut(s) 50
Kzo9I GATC 2 cut(s) 35, 197
LmnI GCTCC 1 cut(s) 126
LpnPI CCDG 5 cut(s) 25, 52, 131, 188, 214
MaeIII GTNAC 1 cut(s) 113
MalI GATC 2 cut(s) 37, 199
MboI GATC 2 cut(s) 35, 197
MflI RGATCY 1 cut(s) 197
MhlI GDGCHC 2 cut(s) 46, 99
MlsI TGGCCA 1 cut(s) 237
MluCI AATT 1 cut(s) 105
MluNI TGGCCA 1 cut(s) 237
MnlI CCTC 2 cut(s) 188, 237
Mox20I TGGCCA 1 cut(s) 237
MscI TGGCCA 1 cut(s) 237
Msp20I TGGCCA 1 cut(s) 237
MspI CCGG 1 cut(s) 175
MspR9I CCNGG 1 cut(s) 40
MvaI CCWGG 1 cut(s) 40
NdeII GATC 2 cut(s) 35, 197
NlaIII CATG 1 cut(s) 50
NlaIV GGNNCC 1 cut(s) 199
PfeI GAWTC 1 cut(s) 211
Psp124BI GAGCTC 1 cut(s) 99
Psp6I CCWGG 1 cut(s) 38
PspGI CCWGG 1 cut(s) 38
PspN4I GGNNCC 1 cut(s) 199
PsuI RGATCY 1 cut(s) 197
SacI GAGCTC 1 cut(s) 99
Sau3AI GATC 2 cut(s) 35, 197
ScrFI CCNGG 1 cut(s) 40
SduI GDGCHC 2 cut(s) 46, 99
SetI ASST 2 cut(s) 99, 120
Sse9I AATT 1 cut(s) 105
SspI AATATT 1 cut(s) 70
SstI GAGCTC 1 cut(s) 99
StyD4I CCNGG 1 cut(s) 38
TasI AATT 1 cut(s) 105
TfiI GAWTC 1 cut(s) 211
TspDTI ATGAA 1 cut(s) 118
XapI RAATTY 1 cut(s) 105
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.