RchiOBHm_Chr1g0351151

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000528
Physical Location & Seq
Reverse (-)
44394359 .. 44395643
1285 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ57694

Sequence Viewer

Length: 174 bp
ATGTGCCCCTATTTCTCTCTTTTTTTTTTTTTTTTCTCTACAGAACTTGATGCTTTGGCCAATAACCATGAAACTATTTCCAGGAAATATAATGTATTGCAATCATCTACTTGTTCTTGTGCACCATTGAGTTTAGAGTACTTCAGAGACACCATGAGGAATGTGAGGCTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

57

Amino Acids

6.73

Weight (kDa)

6.52

Isoelectric Point (pI)

44.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000528)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G49650
fragaria_vesca FvH4_1g18770 FvH4_1g18770 FvH4_7g34230
malus_domestica MD01G1046900.v1.1 MD15G1305400.v1.1 MD16G1282300.v1.1
prunus_persica Prupe.6G211700_v2.0.a1 Prupe.6G211700_v2.0.a1
pyrus_communis pycom01g07280 pycom15g26860 pycom16g25190 pycom16g25200
rosa_chinensis RchiOBHm_Chr1g0351151 RchiOBHm_Chr2g0109641 RchiOBHm_Chr4g0386971 RchiOBHm_Chr4g0413031 RchiOBHm_Chr4g0429541
rosa_laevigata RLG00000007037 RLG00000009264 RLG00000009427 RLG00000015442 RLG00000017752 RLG00000017990 RLG00000022570 RLG00000028427
rosa_multiflora Rmu_sc0000031.1_g000013 Rmu_sc0000332.1_g000058 Rmu_sc0000346.1_g000014 Rmu_sc0000698.1_g000147 Rmu_sc0001152.1_g000047 Rmu_sc0001494.1_g000003 Rmu_sc0002254.1_g000001 Rmu_sc0002531.1_g000001 Rmu_sc0002717.1_g000016 Rmu_sc0002717.1_g000017 Rmu_sc0003220.1_g000024 Rmu_sc0005016.1_g000007 Rmu_sc0005608.1_g000020 Rmu_sc0010686.1_g000003 Rmu_sc0011012.1_g000011 Rmu_sc0021503.1_g000001
rosa_roxburghii Rroxscaffold_2G00082300 Rroxscaffold_2G00099190 Rroxscaffold_2G00129660 Rroxscaffold_2G00134070 Rroxscaffold_3G00236170 Rroxscaffold_5G00346460 Rroxscaffold_7G00156600 Rroxscaffold_7G00205430
rosa_rugosa Rorug01G0267800 Rorug02G0020700 Rorug02G0020700 Rorug02G0161500 Rorug02G0384900 Rorug05G0567000
rosa_samantha Rh1AG062400 Rh1AG132200 Rh1AG231500 Rh1CG126100 Rh1CG184600 Rh1CG215600 Rh1CG237400 Rh2AG213700 Rh2BG068400 Rh2BG224100 Rh2BG239600 Rh2CG069600 Rh2CG216000 Rh2CG585300 Rh2DG067600 Rh2DG219200 Rh4AG177200 Rh5AG509600 Rh5BG290500 Rh5BG328900 Rh5DG300300 Rh5DG340100 Rh6BG103200 Rh7DG421500
rosa_wichuraiana Rw1G006030 Rw1G006580 Rw2G006320 Rw5G004390 Rw5G029130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 57
AcuI CTGAAG 1 cut(s) 127
AfaI GTAC 1 cut(s) 140
AjnI CCWGG 1 cut(s) 80
Alw21I GWGCWC 1 cut(s) 124
Alw26I GTCTC 1 cut(s) 141
Alw44I GTGCAC 1 cut(s) 120
AoxI GGCC 1 cut(s) 57
ApaLI GTGCAC 1 cut(s) 120
BaeGI GKGCMC 2 cut(s) 8, 124
BalI TGGCCA 1 cut(s) 59
Bbv12I GWGCWC 1 cut(s) 124
BciT130I CCWGG 1 cut(s) 82
BcoDI GTCTC 1 cut(s) 141
BfmI CTRYAG 1 cut(s) 39
BmcAI AGTACT 1 cut(s) 140
Bme1390I CCNGG 1 cut(s) 82
BmrFI CCNGG 1 cut(s) 82
BmsI GCATC 1 cut(s) 40
BseBI CCWGG 1 cut(s) 82
BseSI GKGCMC 2 cut(s) 8, 124
BshFI GGCC 1 cut(s) 59
BsiHKAI GWGCWC 1 cut(s) 124
BsmAI GTCTC 1 cut(s) 141
BsnI GGCC 1 cut(s) 59
Bsp1286I GDGCHC 2 cut(s) 8, 124
BspANI GGCC 1 cut(s) 59
Bst2UI CCWGG 1 cut(s) 82
BstMAI GTCTC 1 cut(s) 141
BstNI CCWGG 1 cut(s) 82
BstSCI CCNGG 1 cut(s) 80
BstSFI CTRYAG 1 cut(s) 39
BstSLI GKGCMC 2 cut(s) 8, 124
BsuRI GGCC 1 cut(s) 59
Csp6I GTAC 1 cut(s) 139
CviAII CATG 2 cut(s) 68, 154
CviJI RGCY 2 cut(s) 59, 169
CviKI_1 RGCY 2 cut(s) 59, 169
CviQI GTAC 1 cut(s) 139
EaeI YGGCCR 1 cut(s) 57
Eco57I CTGAAG 1 cut(s) 127
EcoRII CCWGG 1 cut(s) 80
FaeI CATG 2 cut(s) 71, 157
FaiI YATR 3 cut(s) 69, 90, 155
FatI CATG 2 cut(s) 67, 153
HaeIII GGCC 1 cut(s) 59
Hin1II CATG 2 cut(s) 71, 157
Hpy166II GTNNAC 1 cut(s) 122
Hpy188I TCNGA 1 cut(s) 146
Hpy8I GTNNAC 1 cut(s) 122
HpyCH4V TGCA 2 cut(s) 100, 122
Hsp92II CATG 2 cut(s) 71, 157
LpnPI CCDG 2 cut(s) 67, 94
LweI GCATC 1 cut(s) 40
MhlI GDGCHC 2 cut(s) 8, 124
MlsI TGGCCA 1 cut(s) 59
MluNI TGGCCA 1 cut(s) 59
MnlI CCTC 2 cut(s) 150, 159
Mox20I TGGCCA 1 cut(s) 59
MscI TGGCCA 1 cut(s) 59
Msp20I TGGCCA 1 cut(s) 59
MspR9I CCNGG 1 cut(s) 82
MvaI CCWGG 1 cut(s) 82
NlaIII CATG 2 cut(s) 71, 157
PfoI TCCNGGA 1 cut(s) 80
Psp6I CCWGG 1 cut(s) 80
PspGI CCWGG 1 cut(s) 80
RsaI GTAC 1 cut(s) 140
RsaNI GTAC 1 cut(s) 139
ScaI AGTACT 1 cut(s) 140
ScrFI CCNGG 1 cut(s) 82
SduI GDGCHC 2 cut(s) 8, 124
SfaNI GCATC 1 cut(s) 40
SfcI CTRYAG 1 cut(s) 39
SgeI CNNG 7 cut(s) 59, 80, 93, 94, 123, 129, 166
StyD4I CCNGG 1 cut(s) 80
TatI WGTACW 1 cut(s) 138
TspDTI ATGAA 1 cut(s) 84
VneI GTGCAC 1 cut(s) 120
ZrmI AGTACT 1 cut(s) 140
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.