Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002717.1

Orthogroup ID

OG0000528

Physical Location & Seq

Genomic Coordinates Reverse (-)

80756 .. 82334

Gene Structure 1579 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002717.1_g000017.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

atgttgggattgtcggaaaacttccttcgcgaaagttgtagagcgcgacgatacgagttcgtggacatatgcgaactgctgcggtctctggccgtgaaacttggtcagttggttcgcctcctccgtctggtcgtccctgtggtgttctctagcggcgatatccaccgtgtgcgacgcaacaaggcggtgcagttgggtgatttcggacccgaccggaaatcacaactccggcgacttcatggcttcatgcttccttggttgaattcagagaaggttttggccagcggcggtgccccaccgcctgtggcggcgttccgaccacttaaggaactgtttttggggaccaagagggatttcagcactgcgattctcgagcggaagaaggcagtaaatgtcctcgtcgtcgatgaggccatctatgatgacaactccgtcgtcactctccaccctgagaccatggagaagctttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005737 GO:0005794 GO:0005829 GO:0005886 GO:0008150 GO:0009893 GO:0009894 GO:0009896 GO:0010035 GO:0010038 GO:0010604 GO:0012505 GO:0016020 GO:0019222 GO:0031974 GO:0031981 GO:0042176 GO:0042221 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045732 GO:0046686 GO:0048518 GO:0050789 GO:0050896 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0065007 GO:0070013 GO:0071944 GO:0080090

KEGG Pathways

Metabolic & Signaling

ko04141 ko05134 map04141 map05134

Pfam Domains

Protein Families

AAA CDC48_2 CDC48_N Vps4_C

Protein Analysis

156

Amino Acids

17.67

Weight (kDa)

9.79

Isoelectric Point (pI)

46.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000528)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49650
fragaria_vesca	FvH4_1g18770 FvH4_1g18770 FvH4_7g34230
malus_domestica	MD01G1046900.v1.1 MD15G1305400.v1.1 MD16G1282300.v1.1
prunus_persica	Prupe.6G211700_v2.0.a1 Prupe.6G211700_v2.0.a1
pyrus_communis	pycom01g07280 pycom15g26860 pycom16g25190 pycom16g25200
rosa_chinensis	RchiOBHm_Chr1g0351151 RchiOBHm_Chr2g0109641 RchiOBHm_Chr4g0386971 RchiOBHm_Chr4g0413031 RchiOBHm_Chr4g0429541
rosa_laevigata	RLG00000007037 RLG00000009264 RLG00000009427 RLG00000015442 RLG00000017752 RLG00000017990 RLG00000022570 RLG00000028427
rosa_multiflora	Rmu_sc0000031.1_g000013 Rmu_sc0000332.1_g000058 Rmu_sc0000346.1_g000014 Rmu_sc0000698.1_g000147 Rmu_sc0001152.1_g000047 Rmu_sc0001494.1_g000003 Rmu_sc0002254.1_g000001 Rmu_sc0002531.1_g000001 Rmu_sc0002717.1_g000016 Rmu_sc0002717.1_g000017 Rmu_sc0003220.1_g000024 Rmu_sc0005016.1_g000007 Rmu_sc0005608.1_g000020 Rmu_sc0010686.1_g000003 Rmu_sc0011012.1_g000011 Rmu_sc0021503.1_g000001
rosa_roxburghii	Rroxscaffold_2G00082300 Rroxscaffold_2G00099190 Rroxscaffold_2G00129660 Rroxscaffold_2G00134070 Rroxscaffold_3G00236170 Rroxscaffold_5G00346460 Rroxscaffold_7G00156600 Rroxscaffold_7G00205430
rosa_rugosa	Rorug01G0267800 Rorug02G0020700 Rorug02G0020700 Rorug02G0161500 Rorug02G0384900 Rorug05G0567000
rosa_samantha	Rh1AG062400 Rh1AG132200 Rh1AG231500 Rh1CG126100 Rh1CG184600 Rh1CG215600 Rh1CG237400 Rh2AG213700 Rh2BG068400 Rh2BG224100 Rh2BG239600 Rh2CG069600 Rh2CG216000 Rh2CG585300 Rh2DG067600 Rh2DG219200 Rh4AG177200 Rh5AG509600 Rh5BG290500 Rh5BG328900 Rh5DG300300 Rh5DG340100 Rh6BG103200 Rh7DG421500
rosa_wichuraiana	Rw1G006030 Rw1G006580 Rw2G006320 Rw5G004390 Rw5G029130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	431
AccB1I	GGYRCC	1 cut(s)	290
AccBSI	CCGCTC	1 cut(s)	376
AccII	CGCG	2 cut(s)	30, 46
AciI	CCGC	8 cut(s)	82, 153, 185, 285, 288, 299, 308, 376
AcoI	YGGCCR	2 cut(s)	90, 279
AcsI	RAATTY	1 cut(s)	262
AdeI	CACNNNGTG	1 cut(s)	169
AfiI	CCNNNNNNNGG	1 cut(s)	127
AflII	CTTAAG	1 cut(s)	323
AgsI	TTSAA	1 cut(s)	262
AjuI	GAANNNNNNNTTGG	2 cut(s)	338, 370
AluBI	AGCT	1 cut(s)	466
AluI	AGCT	1 cut(s)	466
Alw26I	GTCTC	2 cut(s)	90, 446
Ama87I	CYCGRG	1 cut(s)	371
AoxI	GGCC	3 cut(s)	90, 279, 411
ApeKI	GCWGC	1 cut(s)	79
ApoI	RAATTY	1 cut(s)	262
AspLEI	GCGC	1 cut(s)	46
AspS9I	GGNCC	2 cut(s)	206, 342
AsuHPI	GGTGA	1 cut(s)	209
AvaI	CYCGRG	1 cut(s)	371
AvaII	GGWCC	2 cut(s)	206, 342
BaeGI	GKGCMC	1 cut(s)	295
BalI	TGGCCA	1 cut(s)	281
BanI	GGYRCC	1 cut(s)	290
BbvI	GCAGC	1 cut(s)	66
BccI	CCATC	1 cut(s)	422
BceAI	ACGGC	1 cut(s)	77
BcoDI	GTCTC	2 cut(s)	90, 446
BfaI	CTAG	1 cut(s)	150
BfrI	CTTAAG	1 cut(s)	323
BisI	GCNGC	4 cut(s)	80, 154, 286, 309
BlsI	GCNGC	4 cut(s)	81, 155, 287, 310
Bme18I	GGWCC	2 cut(s)	206, 342
BmeT110I	CYCGRG	1 cut(s)	371
BmgT120I	GGNCC	2 cut(s)	206, 342
BmiI	GGNNCC	3 cut(s)	208, 292, 343
BsaI	GGTCTC	2 cut(s)	90, 446
BsaJI	CCNNGG	2 cut(s)	254, 456
BsaWI	WCCGGW	1 cut(s)	213
Bsc4I	CCNNNNNNNGG	1 cut(s)	127
BseDI	CCNNGG	2 cut(s)	254, 456
BseLI	CCNNNNNNNGG	1 cut(s)	127
BseMII	CTCAG	1 cut(s)	441
BseRI	GAGGAG	1 cut(s)	110
BseSI	GKGCMC	1 cut(s)	295
BseXI	GCAGC	1 cut(s)	66
BsgI	GTGCAG	1 cut(s)	209
Bsh1236I	CGCG	2 cut(s)	30, 46
Bsh1285I	CGRYCG	1 cut(s)	214
BshFI	GGCC	3 cut(s)	92, 281, 413
BshNI	GGYRCC	1 cut(s)	290
BsiEI	CGRYCG	1 cut(s)	214
BsiHKCI	CYCGRG	1 cut(s)	371
BsiSI	CCGG	2 cut(s)	214, 229
BslFI	GGGAC	2 cut(s)	119, 355
BslI	CCNNNNNNNGG	1 cut(s)	127
BsmAI	GTCTC	2 cut(s)	90, 446
BsmFI	GGGAC	2 cut(s)	119, 355
BsnI	GGCC	3 cut(s)	92, 281, 413
Bso31I	GGTCTC	2 cut(s)	90, 446
BsoBI	CYCGRG	1 cut(s)	371
Bsp1286I	GDGCHC	1 cut(s)	295
Bsp19I	CCATGG	1 cut(s)	456
Bsp68I	TCGCGA	1 cut(s)	30
BspACI	CCGC	8 cut(s)	82, 153, 185, 285, 288, 299, 308, 376
BspANI	GGCC	3 cut(s)	92, 281, 413
BspCNI	CTCAG	1 cut(s)	442
BspFNI	CGCG	2 cut(s)	30, 46
BspLI	GGNNCC	3 cut(s)	208, 292, 343
BspT107I	GGYRCC	1 cut(s)	290
BspTI	CTTAAG	1 cut(s)	323
BspTNI	GGTCTC	2 cut(s)	90, 446
BsrBI	CCGCTC	1 cut(s)	376
BssECI	CCNNGG	2 cut(s)	254, 456
BssT1I	CCWWGG	2 cut(s)	254, 456
Bst4CI	ACNGT	2 cut(s)	167, 333
BstAFI	CTTAAG	1 cut(s)	323
BstC8I	GCNNGC	1 cut(s)	283
BstDEI	CTNAG	1 cut(s)	450
BstDSI	CCRYGG	1 cut(s)	456
BstFNI	CGCG	2 cut(s)	30, 46
BstHHI	GCGC	1 cut(s)	46
BstMAI	GTCTC	2 cut(s)	90, 446
BstMCI	CGRYCG	1 cut(s)	214
BstSLI	GKGCMC	1 cut(s)	295
BstUI	CGCG	2 cut(s)	30, 46
BstV1I	GCAGC	1 cut(s)	66
BsuRI	GGCC	3 cut(s)	92, 281, 413
BtgI	CCRYGG	1 cut(s)	456
BtsI	GCAGTG	1 cut(s)	360
BtsIMutI	CAGTG	1 cut(s)	360
BtuMI	TCGCGA	1 cut(s)	30
Cac8I	GCNNGC	1 cut(s)	283
CfoI	GCGC	1 cut(s)	46
Cfr13I	GGNCC	2 cut(s)	206, 342
CseI	GACGC	1 cut(s)	183
CviAII	CATG	3 cut(s)	239, 247, 457
CviJI	RGCY	5 cut(s)	92, 243, 281, 413, 466
CviKI_1	RGCY	5 cut(s)	92, 243, 281, 413, 466
DdeI	CTNAG	1 cut(s)	450
DraIII	CACNNNGTG	1 cut(s)	169
DrdI	GACNNNNNNGTC	1 cut(s)	431
DseDI	GACNNNNNNGTC	1 cut(s)	431
EaeI	YGGCCR	2 cut(s)	90, 279
Eco130I	CCWWGG	2 cut(s)	254, 456
Eco31I	GGTCTC	2 cut(s)	90, 446
Eco32I	GATATC	1 cut(s)	160
Eco47I	GGWCC	2 cut(s)	206, 342
Eco88I	CYCGRG	1 cut(s)	371
EcoRI	GAATTC	1 cut(s)	262
EcoRV	GATATC	1 cut(s)	160
EcoT14I	CCWWGG	2 cut(s)	254, 456
ErhI	CCWWGG	2 cut(s)	254, 456
FaeI	CATG	3 cut(s)	242, 250, 460
FaiI	YATR	6 cut(s)	68, 70, 240, 248, 420, 458
FaqI	GGGAC	2 cut(s)	119, 355
FatI	CATG	3 cut(s)	238, 246, 456
FauNDI	CATATG	1 cut(s)	68
Fnu4HI	GCNGC	4 cut(s)	80, 154, 286, 309
Fsp4HI	GCNGC	4 cut(s)	80, 154, 286, 309
FspBI	CTAG	1 cut(s)	150
GlaI	GCGC	1 cut(s)	45
GluI	GCNGC	4 cut(s)	80, 154, 286, 309
HaeIII	GGCC	3 cut(s)	92, 281, 413
HapII	CCGG	2 cut(s)	214, 229
HgaI	GACGC	1 cut(s)	183
HhaI	GCGC	1 cut(s)	46
Hin1II	CATG	3 cut(s)	242, 250, 460
Hin6I	GCGC	1 cut(s)	44
HinP1I	GCGC	1 cut(s)	44
HindIII	AAGCTT	1 cut(s)	464
HinfI	GANTC	1 cut(s)	367
HpaII	CCGG	2 cut(s)	214, 229
HphI	GGTGA	1 cut(s)	209
Hpy166II	GTNNAC	1 cut(s)	64
Hpy188I	TCNGA	4 cut(s)	16, 206, 268, 317
Hpy188III	TCNNGA	2 cut(s)	29, 371
Hpy8I	GTNNAC	1 cut(s)	64
Hpy99I	CGWCG	5 cut(s)	51, 177, 404, 407, 437
HpyAV	CCTTC	3 cut(s)	35, 265, 376
HpyCH4III	ACNGT	2 cut(s)	167, 333
HpyCH4V	TGCA	1 cut(s)	190
HpyF3I	CTNAG	1 cut(s)	450
Hsp92II	CATG	3 cut(s)	242, 250, 460
HspAI	GCGC	1 cut(s)	44
LpnPI	CCDG	8 cut(s)	74, 113, 150, 227, 242, 295, 315, 462
Lsp1109I	GCAGC	1 cut(s)	66
MaeI	CTAG	1 cut(s)	150
MaeIII	GTNAC	1 cut(s)	436
MbiI	CCGCTC	1 cut(s)	376
MboII	GAAGA	1 cut(s)	391
MhlI	GDGCHC	1 cut(s)	295
MlsI	TGGCCA	1 cut(s)	281
MluCI	AATT	1 cut(s)	262
MluNI	TGGCCA	1 cut(s)	281
MmeI	TCCRAC	1 cut(s)	340
MnlI	CCTC	5 cut(s)	128, 131, 342, 403, 407
Mox20I	TGGCCA	1 cut(s)	281
MscI	TGGCCA	1 cut(s)	281
MseI	TTAA	1 cut(s)	324
Msp20I	TGGCCA	1 cut(s)	281
MspA1I	CMGCKG	1 cut(s)	285
MspCI	CTTAAG	1 cut(s)	323
MspI	CCGG	2 cut(s)	214, 229
MvnI	CGCG	2 cut(s)	30, 46
NcoI	CCATGG	1 cut(s)	456
NdeI	CATATG	1 cut(s)	68
NlaIII	CATG	3 cut(s)	242, 250, 460
NlaIV	GGNNCC	3 cut(s)	208, 292, 343
NmuCI	GTSAC	1 cut(s)	436
NruI	TCGCGA	1 cut(s)	30
PaeR7I	CTCGAG	1 cut(s)	371
PcsI	WCGNNNNNNNCGW	1 cut(s)	121
PfeI	GAWTC	1 cut(s)	367
PkrI	GCNGC	4 cut(s)	81, 155, 287, 310
PspN4I	GGNNCC	3 cut(s)	208, 292, 343
PspPI	GGNCC	2 cut(s)	206, 342
RruI	TCGCGA	1 cut(s)	30
SaqAI	TTAA	1 cut(s)	324
SatI	GCNGC	4 cut(s)	80, 154, 286, 309
Sau96I	GGNCC	2 cut(s)	206, 342
SduI	GDGCHC	1 cut(s)	295
SetI	ASST	2 cut(s)	276, 468
Sfr274I	CTCGAG	1 cut(s)	371
SinI	GGWCC	2 cut(s)	206, 342
SlaI	CTCGAG	1 cut(s)	371
SmlI	CTYRAG	2 cut(s)	323, 371
SmoI	CTYRAG	2 cut(s)	323, 371
Sse9I	AATT	1 cut(s)	262
SsiI	CCGC	8 cut(s)	82, 153, 185, 285, 288, 299, 308, 376
SspMI	CTAG	1 cut(s)	150
StyI	CCWWGG	2 cut(s)	254, 456
TaaI	ACNGT	2 cut(s)	167, 333
TaqI	TCGA	2 cut(s)	372, 405
TasI	AATT	1 cut(s)	262
TauI	GCSGC	3 cut(s)	156, 288, 311
TfiI	GAWTC	1 cut(s)	367
Tru1I	TTAA	1 cut(s)	324
Tru9I	TTAA	1 cut(s)	324
TscAI	CASTG	1 cut(s)	367
TseFI	GTSAC	1 cut(s)	436
TseI	GCWGC	1 cut(s)	79
Tsp45I	GTSAC	1 cut(s)	436
TspDTI	ATGAA	2 cut(s)	227, 235
TspGWI	ACGGA	2 cut(s)	113, 421
TspRI	CASTG	1 cut(s)	367
Vha464I	CTTAAG	1 cut(s)	323
VpaK11BI	GGWCC	2 cut(s)	206, 342
XapI	RAATTY	1 cut(s)	262
XhoI	CTCGAG	1 cut(s)	371
XspI	CTAG	1 cut(s)	150

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.