Rh1CG184600

Cell division

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0000528
Physical Location & Seq
Reverse (-)
40500205 .. 40504392
4188 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG184600.1

Sequence Viewer

Length: 507 bp
ATGATAACCCTTACCTTGTCTTGTATCCATCTGGCAAATGGGACTAAGAGGGATTTCAGCTCTGTGATTCTCGAGCGGAAGAAGGCAGCGAATCTCCTTGTTGTCGATGAGGCCATCAATGATGTCAACTTTGTCGTCGCGCTCCACCCTGAGACCATGGAGAAGCTCCAGCTCTTTAGGGGCAACACAATCCTCATCAAGAAGAGCAAAGGTGGAGATGGTAGCTCGATTGGTAATGATTCAAAAAGATCAATGGGACCGGTTTTCAGCACTTTTGTTTATGAGGAGGGATCTGAAAATGATTTATATTTGACAAACTATGTCAGAGTTTTAATGGAAATGTATTGCAAACTCTATTTAACTCAGCAGACGGACTTGGCAATTACTTTGTCAAACTGCATTGTTGCTCACAATAATGACTTGTTCGCTTTGCTGGTGTCCTATAACTTTGCCGAGATAAAAAGCAATGTGTTCAAGCGATATAGTAAGGAAAACATTCATAGCCTG

Protein Analysis

169

Amino Acids

19.04

Weight (kDa)

6.9

Isoelectric Point (pI)

29.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF747 PF05346 114 - 168 3.4e-12 Eukaryotic membrane protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000528)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G49650
fragaria_vesca FvH4_1g18770 FvH4_1g18770 FvH4_7g34230
malus_domestica MD01G1046900.v1.1 MD15G1305400.v1.1 MD16G1282300.v1.1
prunus_persica Prupe.6G211700_v2.0.a1 Prupe.6G211700_v2.0.a1
pyrus_communis pycom01g07280 pycom15g26860 pycom16g25190 pycom16g25200
rosa_chinensis RchiOBHm_Chr1g0351151 RchiOBHm_Chr2g0109641 RchiOBHm_Chr4g0386971 RchiOBHm_Chr4g0413031 RchiOBHm_Chr4g0429541
rosa_laevigata RLG00000007037 RLG00000009264 RLG00000009427 RLG00000015442 RLG00000017752 RLG00000017990 RLG00000022570 RLG00000028427
rosa_multiflora Rmu_sc0000031.1_g000013 Rmu_sc0000332.1_g000058 Rmu_sc0000346.1_g000014 Rmu_sc0000698.1_g000147 Rmu_sc0001152.1_g000047 Rmu_sc0001494.1_g000003 Rmu_sc0002254.1_g000001 Rmu_sc0002531.1_g000001 Rmu_sc0002717.1_g000016 Rmu_sc0002717.1_g000017 Rmu_sc0003220.1_g000024 Rmu_sc0005016.1_g000007 Rmu_sc0005608.1_g000020 Rmu_sc0010686.1_g000003 Rmu_sc0011012.1_g000011 Rmu_sc0021503.1_g000001
rosa_roxburghii Rroxscaffold_2G00082300 Rroxscaffold_2G00099190 Rroxscaffold_2G00129660 Rroxscaffold_2G00134070 Rroxscaffold_3G00236170 Rroxscaffold_5G00346460 Rroxscaffold_7G00156600 Rroxscaffold_7G00205430
rosa_rugosa Rorug01G0267800 Rorug02G0020700 Rorug02G0020700 Rorug02G0161500 Rorug02G0384900 Rorug05G0567000
rosa_samantha Rh1AG062400 Rh1AG132200 Rh1AG231500 Rh1CG126100 Rh1CG184600 Rh1CG215600 Rh1CG237400 Rh2AG213700 Rh2BG068400 Rh2BG224100 Rh2BG239600 Rh2CG069600 Rh2CG216000 Rh2CG585300 Rh2DG067600 Rh2DG219200 Rh4AG177200 Rh5AG509600 Rh5BG290500 Rh5BG328900 Rh5DG300300 Rh5DG340100 Rh6BG103200 Rh7DG421500
rosa_wichuraiana Rw1G006030 Rw1G006580 Rw2G006320 Rw5G004390 Rw5G029130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 76
AccII CGCG 1 cut(s) 140
AciI CCGC 1 cut(s) 76
AclWI GGATC 1 cut(s) 298
AgeI ACCGGT 1 cut(s) 259
AgsI TTSAA 2 cut(s) 243, 475
AluBI AGCT 4 cut(s) 60, 166, 172, 225
AluI AGCT 4 cut(s) 60, 166, 172, 225
Alw26I GTCTC 1 cut(s) 146
AlwI GGATC 1 cut(s) 298
Ama87I CYCGRG 1 cut(s) 71
AoxI GGCC 1 cut(s) 111
ApeKI GCWGC 1 cut(s) 86
AsiGI ACCGGT 1 cut(s) 259
Asp700I GAANNNNTTC 1 cut(s) 495
AspLEI GCGC 1 cut(s) 142
AspS9I GGNCC 1 cut(s) 257
AvaI CYCGRG 1 cut(s) 71
AvaII GGWCC 1 cut(s) 257
BbvI GCAGC 1 cut(s) 98
BccI CCATC 3 cut(s) 36, 122, 212
BciVI GTATCC 1 cut(s) 35
BcoDI GTCTC 1 cut(s) 146
BfuI GTATCC 1 cut(s) 35
BisI GCNGC 1 cut(s) 87
BlsI GCNGC 1 cut(s) 88
Bme18I GGWCC 1 cut(s) 257
BmeT110I CYCGRG 1 cut(s) 71
BmgT120I GGNCC 1 cut(s) 257
BmiI GGNNCC 1 cut(s) 258
BpmI CTGGAG 1 cut(s) 152
BsaI GGTCTC 1 cut(s) 146
BsaJI CCNNGG 1 cut(s) 156
BsaWI WCCGGW 1 cut(s) 259
Bse118I RCCGGY 1 cut(s) 259
Bse3DI GCAATG 1 cut(s) 472
BseDI CCNNGG 1 cut(s) 156
BseMI GCAATG 1 cut(s) 472
BseMII CTCAG 2 cut(s) 141, 377
BseRI GAGGAG 1 cut(s) 299
BseXI GCAGC 1 cut(s) 98
Bsh1236I CGCG 1 cut(s) 140
BshFI GGCC 1 cut(s) 113
BshTI ACCGGT 1 cut(s) 259
BsiHKCI CYCGRG 1 cut(s) 71
BsiSI CCGG 1 cut(s) 260
BslFI GGGAC 2 cut(s) 55, 270
BsmAI GTCTC 1 cut(s) 146
BsmFI GGGAC 2 cut(s) 55, 270
BsnI GGCC 1 cut(s) 113
Bso31I GGTCTC 1 cut(s) 146
BsoBI CYCGRG 1 cut(s) 71
Bsp143I GATC 2 cut(s) 248, 290
Bsp19I CCATGG 1 cut(s) 156
BspACI CCGC 1 cut(s) 76
BspANI GGCC 1 cut(s) 113
BspCNI CTCAG 2 cut(s) 142, 376
BspFNI CGCG 1 cut(s) 140
BspLI GGNNCC 1 cut(s) 258
BspPI GGATC 1 cut(s) 298
BspQI GCTCTTC 1 cut(s) 197
BspTNI GGTCTC 1 cut(s) 146
BsrBI CCGCTC 1 cut(s) 76
BsrDI GCAATG 1 cut(s) 472
BsrFI RCCGGY 1 cut(s) 259
BssAI RCCGGY 1 cut(s) 259
BssECI CCNNGG 1 cut(s) 156
BssMI GATC 2 cut(s) 248, 290
BssT1I CCWWGG 1 cut(s) 156
Bst6I CTCTTC 1 cut(s) 197
BstDEI CTNAG 3 cut(s) 45, 150, 363
BstDSI CCRYGG 1 cut(s) 156
BstFNI CGCG 1 cut(s) 140
BstHHI GCGC 1 cut(s) 142
BstKTI GATC 2 cut(s) 251, 293
BstMAI GTCTC 1 cut(s) 146
BstMBI GATC 2 cut(s) 248, 290
BstUI CGCG 1 cut(s) 140
BstV1I GCAGC 1 cut(s) 98
BstX2I RGATCY 1 cut(s) 290
BstYI RGATCY 1 cut(s) 290
BsuI GTATCC 1 cut(s) 35
BsuRI GGCC 1 cut(s) 113
BtgI CCRYGG 1 cut(s) 156
CfoI GCGC 1 cut(s) 142
Cfr10I RCCGGY 1 cut(s) 259
Cfr13I GGNCC 1 cut(s) 257
CspAI ACCGGT 1 cut(s) 259
CviAII CATG 1 cut(s) 157
CviJI RGCY 6 cut(s) 60, 113, 166, 172, 225, 504
CviKI_1 RGCY 6 cut(s) 60, 113, 166, 172, 225, 504
DdeI CTNAG 3 cut(s) 45, 150, 363
DpnI GATC 2 cut(s) 250, 292
DpnII GATC 2 cut(s) 248, 290
Eam1104I CTCTTC 1 cut(s) 197
EarI CTCTTC 1 cut(s) 197
Eco130I CCWWGG 1 cut(s) 156
Eco31I GGTCTC 1 cut(s) 146
Eco47I GGWCC 1 cut(s) 257
Eco88I CYCGRG 1 cut(s) 71
EcoT14I CCWWGG 1 cut(s) 156
ErhI CCWWGG 1 cut(s) 156
FaeI CATG 1 cut(s) 160
FaiI YATR 7 cut(s) 158, 282, 307, 321, 444, 483, 501
FaqI GGGAC 2 cut(s) 55, 270
FatI CATG 1 cut(s) 156
Fnu4HI GCNGC 1 cut(s) 87
Fsp4HI GCNGC 1 cut(s) 87
GlaI GCGC 1 cut(s) 141
GluI GCNGC 1 cut(s) 87
GsuI CTGGAG 1 cut(s) 152
HaeIII GGCC 1 cut(s) 113
HapII CCGG 1 cut(s) 260
HhaI GCGC 1 cut(s) 142
Hin1II CATG 1 cut(s) 160
Hin6I GCGC 1 cut(s) 140
HinP1I GCGC 1 cut(s) 140
HincII GTYRAC 1 cut(s) 127
HindII GTYRAC 1 cut(s) 127
HinfI GANTC 3 cut(s) 67, 91, 239
HpaII CCGG 1 cut(s) 260
Hpy166II GTNNAC 1 cut(s) 127
Hpy188I TCNGA 2 cut(s) 295, 326
Hpy188III TCNNGA 2 cut(s) 71, 199
Hpy8I GTNNAC 1 cut(s) 127
Hpy99I CGWCG 1 cut(s) 140
HpyAV CCTTC 1 cut(s) 76
HpyCH4V TGCA 2 cut(s) 348, 399
HpyF3I CTNAG 3 cut(s) 45, 150, 363
Hsp92II CATG 1 cut(s) 160
HspAI GCGC 1 cut(s) 140
Kzo9I GATC 2 cut(s) 248, 290
LguI GCTCTTC 1 cut(s) 197
LmnI GCTCC 2 cut(s) 147, 171
LpnPI CCDG 5 cut(s) 17, 162, 182, 273, 419
Lsp1109I GCAGC 1 cut(s) 98
MalI GATC 2 cut(s) 250, 292
MbiI CCGCTC 1 cut(s) 76
MboI GATC 2 cut(s) 248, 290
MboII GAAGA 2 cut(s) 91, 214
MflI RGATCY 1 cut(s) 290
MluCI AATT 1 cut(s) 381
MnlI CCTC 5 cut(s) 42, 103, 203, 277, 280
MroXI GAANNNNTTC 1 cut(s) 495
MseI TTAA 2 cut(s) 332, 359
MslI CAYNNNNRTG 1 cut(s) 414
MspI CCGG 1 cut(s) 260
MvnI CGCG 1 cut(s) 140
NcoI CCATGG 1 cut(s) 156
NdeII GATC 2 cut(s) 248, 290
NlaIII CATG 1 cut(s) 160
NlaIV GGNNCC 1 cut(s) 258
NmeAIII GCCGAG 1 cut(s) 478
PaeR7I CTCGAG 1 cut(s) 71
PciSI GCTCTTC 1 cut(s) 197
PdmI GAANNNNTTC 1 cut(s) 495
PfeI GAWTC 3 cut(s) 67, 91, 239
PinAI ACCGGT 1 cut(s) 259
PkrI GCNGC 1 cut(s) 88
PspN4I GGNNCC 1 cut(s) 258
PspPI GGNCC 1 cut(s) 257
PsuI RGATCY 1 cut(s) 290
RseI CAYNNNNRTG 1 cut(s) 414
SapI GCTCTTC 1 cut(s) 197
SaqAI TTAA 2 cut(s) 332, 359
SatI GCNGC 1 cut(s) 87
Sau3AI GATC 2 cut(s) 248, 290
Sau96I GGNCC 1 cut(s) 257
SetI ASST 6 cut(s) 17, 62, 168, 174, 214, 227
Sfr274I CTCGAG 1 cut(s) 71
SinI GGWCC 1 cut(s) 257
SlaI CTCGAG 1 cut(s) 71
SmiMI CAYNNNNRTG 1 cut(s) 414
SmlI CTYRAG 1 cut(s) 71
SmoI CTYRAG 1 cut(s) 71
Sse9I AATT 1 cut(s) 381
SsiI CCGC 1 cut(s) 76
StyI CCWWGG 1 cut(s) 156
TaqI TCGA 3 cut(s) 72, 105, 227
TasI AATT 1 cut(s) 381
TfiI GAWTC 3 cut(s) 67, 91, 239
Tru1I TTAA 2 cut(s) 332, 359
Tru9I TTAA 2 cut(s) 332, 359
TseI GCWGC 1 cut(s) 86
TspDTI ATGAA 1 cut(s) 488
TspGWI ACGGA 1 cut(s) 386
VpaK11BI GGWCC 1 cut(s) 257
XcmI CCANNNNNNNNNTGG 1 cut(s) 35
XhoI CTCGAG 1 cut(s) 71
XmnI GAANNNNTTC 1 cut(s) 495
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.