Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0000528

Physical Location & Seq

Genomic Coordinates Forward (+)

5118373 .. 5120770

Gene Structure 2398 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG067600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGCCTCTAAGTGTTGAAGGATATGTTCATCGTATTGGTCGTACTGGAAGAGCATATAGTACTGGTGCTTCTGTGTCTCTTGTTTCTCCAGATGAGATGAAAGTTTTTGAAGAGATAAAGTCCTTTTTGGGTGATGCTGAAGAAAATGATTCAAATAAACTTGTTCCATTTACTTTACTGACCAAGAATGCAGTGGAGTCTTTAAGATATAGAGCTGAGGATGTCTCAAAGAGTGTGACAAAACTTGCCATGAGAGAATCCCGAGCTCAGGATTTGAGGAATGAAATTCTCAATTCTGAAAAGTTGAAGGCTCATTTTGAAGCCAACCAAAAGGATCTAGATCTGTTGAAACATGACAAGGTTTTAAGTAAGAAGCCCCCTGCTCCTCACCTGCGAGTTGTGCCTGATTATCTGTTGGATGCAACAACTAAAGAAGCCAGCAAGAGAGTTAAGCTTGTGAGAGCTGCAATGGGTAACAACAACCCTGGTCGCCGTGGATTCAAGAAAAAATTCAAGAAAGATAAGGACCCCCTTAAGTCTCTCAGTGCTCAGGGACCCAAGAAAGGAAGAAGGGAAAGAAAAGATGGCAATGAGAACCATAAGCAAAAAAGGCAAAAGACATCCTTGTGTTGTATAGACGGGGTTTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010467 GO:0010501 GO:0016070 GO:0016072 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022613 GO:0031974 GO:0031981 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0071840 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

216

Amino Acids

24.39

Weight (kDa)

9.85

Isoelectric Point (pI)

33.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000528)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49650
fragaria_vesca	FvH4_1g18770 FvH4_1g18770 FvH4_7g34230
malus_domestica	MD01G1046900.v1.1 MD15G1305400.v1.1 MD16G1282300.v1.1
prunus_persica	Prupe.6G211700_v2.0.a1 Prupe.6G211700_v2.0.a1
pyrus_communis	pycom01g07280 pycom15g26860 pycom16g25190 pycom16g25200
rosa_chinensis	RchiOBHm_Chr1g0351151 RchiOBHm_Chr2g0109641 RchiOBHm_Chr4g0386971 RchiOBHm_Chr4g0413031 RchiOBHm_Chr4g0429541
rosa_laevigata	RLG00000007037 RLG00000009264 RLG00000009427 RLG00000015442 RLG00000017752 RLG00000017990 RLG00000022570 RLG00000028427
rosa_multiflora	Rmu_sc0000031.1_g000013 Rmu_sc0000332.1_g000058 Rmu_sc0000346.1_g000014 Rmu_sc0000698.1_g000147 Rmu_sc0001152.1_g000047 Rmu_sc0001494.1_g000003 Rmu_sc0002254.1_g000001 Rmu_sc0002531.1_g000001 Rmu_sc0002717.1_g000016 Rmu_sc0002717.1_g000017 Rmu_sc0003220.1_g000024 Rmu_sc0005016.1_g000007 Rmu_sc0005608.1_g000020 Rmu_sc0010686.1_g000003 Rmu_sc0011012.1_g000011 Rmu_sc0021503.1_g000001
rosa_roxburghii	Rroxscaffold_2G00082300 Rroxscaffold_2G00099190 Rroxscaffold_2G00129660 Rroxscaffold_2G00134070 Rroxscaffold_3G00236170 Rroxscaffold_5G00346460 Rroxscaffold_7G00156600 Rroxscaffold_7G00205430
rosa_rugosa	Rorug01G0267800 Rorug02G0020700 Rorug02G0020700 Rorug02G0161500 Rorug02G0384900 Rorug05G0567000
rosa_samantha	Rh1AG062400 Rh1AG132200 Rh1AG231500 Rh1CG126100 Rh1CG184600 Rh1CG215600 Rh1CG237400 Rh2AG213700 Rh2BG068400 Rh2BG224100 Rh2BG239600 Rh2CG069600 Rh2CG216000 Rh2CG585300 Rh2DG067600 Rh2DG219200 Rh4AG177200 Rh5AG509600 Rh5BG290500 Rh5BG328900 Rh5DG300300 Rh5DG340100 Rh6BG103200 Rh7DG421500
rosa_wichuraiana	Rw1G006030 Rw1G006580 Rw2G006320 Rw5G004390 Rw5G029130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	399
Acc36I	ACCTGC	1 cut(s)	399
AclWI	GGATC	1 cut(s)	342
AcsI	RAATTY	2 cut(s)	285, 509
AcuI	CTGAAG	1 cut(s)	159
AfaI	GTAC	2 cut(s)	43, 61
AfiI	CCNNNNNNNGG	2 cut(s)	268, 563
AflII	CTTAAG	1 cut(s)	533
AgsI	TTSAA	8 cut(s)	17, 110, 153, 307, 320, 349, 502, 514
AjnI	CCWGG	1 cut(s)	484
AluBI	AGCT	4 cut(s)	215, 266, 454, 464
AluI	AGCT	4 cut(s)	215, 266, 454, 464
Alw21I	GWGCWC	2 cut(s)	268, 550
Alw26I	GTCTC	3 cut(s)	81, 229, 543
AlwI	GGATC	1 cut(s)	342
Ama87I	CYCGRG	1 cut(s)	261
ApeKI	GCWGC	1 cut(s)	464
ApoI	RAATTY	2 cut(s)	285, 509
Asp700I	GAANNNNTTC	1 cut(s)	509
AspS9I	GGNCC	2 cut(s)	526, 554
AsuHPI	GGTGA	2 cut(s)	143, 380
AvaI	CYCGRG	1 cut(s)	261
AvaII	GGWCC	2 cut(s)	526, 554
BanII	GRGCYC	1 cut(s)	268
BarI	GAAGNNNNNNTAC	2 cut(s)	52, 84
Bbv12I	GWGCWC	2 cut(s)	268, 550
BbvCI	CCTCAGC	1 cut(s)	216
BbvI	GCAGC	1 cut(s)	451
BccI	CCATC	1 cut(s)	578
BceAI	ACGGC	1 cut(s)	477
BciT130I	CCWGG	1 cut(s)	486
BcoDI	GTCTC	3 cut(s)	81, 229, 543
BfaI	CTAG	2 cut(s)	338, 649
BfrI	CTTAAG	1 cut(s)	533
BfuAI	ACCTGC	1 cut(s)	399
BglII	AGATCT	1 cut(s)	340
BisI	GCNGC	1 cut(s)	465
BlsI	GCNGC	1 cut(s)	466
BmcAI	AGTACT	1 cut(s)	61
Bme1390I	CCNGG	1 cut(s)	486
Bme18I	GGWCC	2 cut(s)	526, 554
BmeT110I	CYCGRG	1 cut(s)	261
BmgT120I	GGNCC	2 cut(s)	526, 554
BmiI	GGNNCC	3 cut(s)	528, 555, 556
BmrFI	CCNGG	1 cut(s)	486
BmsI	GCATC	2 cut(s)	124, 409
BplI	GAGNNNNNCTC	2 cut(s)	209, 241
BpmI	CTGGAG	1 cut(s)	72
Bpu10I	CCTNAGC	3 cut(s)	216, 267, 549
BsaBI	GATNNNNATC	1 cut(s)	339
BsaJI	CCNNGG	2 cut(s)	484, 493
Bsc4I	CCNNNNNNNGG	2 cut(s)	268, 563
Bse1I	ACTGG	2 cut(s)	49, 67
Bse3DI	GCAATG	2 cut(s)	474, 595
Bse8I	GATNNNNATC	1 cut(s)	339
BseBI	CCWGG	1 cut(s)	486
BseDI	CCNNGG	2 cut(s)	484, 493
BseGI	GGATG	3 cut(s)	226, 424, 620
BseJI	GATNNNNATC	1 cut(s)	339
BseLI	CCNNNNNNNGG	2 cut(s)	268, 563
BseMI	GCAATG	2 cut(s)	474, 595
BseMII	CTCAG	4 cut(s)	207, 281, 556, 563
BseNI	ACTGG	2 cut(s)	49, 67
BseRI	GAGGAG	1 cut(s)	375
BseXI	GCAGC	1 cut(s)	451
BsiHKAI	GWGCWC	2 cut(s)	268, 550
BsiHKCI	CYCGRG	1 cut(s)	261
BslFI	GGGAC	1 cut(s)	567
BslI	CCNNNNNNNGG	2 cut(s)	268, 563
BsmAI	GTCTC	3 cut(s)	81, 229, 543
BsmFI	GGGAC	1 cut(s)	567
BsmI	GAATGC	1 cut(s)	193
BsoBI	CYCGRG	1 cut(s)	261
Bsp1286I	GDGCHC	2 cut(s)	268, 550
Bsp143I	GATC	2 cut(s)	334, 340
BspCNI	CTCAG	4 cut(s)	208, 280, 555, 562
BspLI	GGNNCC	3 cut(s)	528, 555, 556
BspMI	ACCTGC	1 cut(s)	399
BspPI	GGATC	1 cut(s)	342
BspQI	GCTCTTC	1 cut(s)	43
BspTI	CTTAAG	1 cut(s)	533
BsrDI	GCAATG	2 cut(s)	474, 595
BsrI	ACTGG	2 cut(s)	49, 67
BssECI	CCNNGG	2 cut(s)	484, 493
BssMI	GATC	2 cut(s)	334, 340
Bst2UI	CCWGG	1 cut(s)	486
Bst6I	CTCTTC	2 cut(s)	43, 105
BstAFI	CTTAAG	1 cut(s)	533
BstC8I	GCNNGC	1 cut(s)	439
BstDEI	CTNAG	5 cut(s)	8, 216, 267, 542, 549
BstDSI	CCRYGG	1 cut(s)	493
BstF5I	GGATG	3 cut(s)	226, 424, 620
BstKTI	GATC	2 cut(s)	337, 343
BstMAI	GTCTC	3 cut(s)	81, 229, 543
BstMBI	GATC	2 cut(s)	334, 340
BstMWI	GCNNNNNNNGC	2 cut(s)	400, 610
BstNI	CCWGG	1 cut(s)	486
BstSCI	CCNGG	1 cut(s)	484
BstV1I	GCAGC	1 cut(s)	451
BstX2I	RGATCY	2 cut(s)	334, 340
BstYI	RGATCY	2 cut(s)	334, 340
BtgI	CCRYGG	1 cut(s)	493
BtsCI	GGATG	3 cut(s)	226, 424, 620
BtsI	GCAGTG	1 cut(s)	198
BtsIMutI	CAGTG	2 cut(s)	198, 550
BveI	ACCTGC	1 cut(s)	399
Cac8I	GCNNGC	1 cut(s)	439
Cfr13I	GGNCC	2 cut(s)	526, 554
Csp6I	GTAC	2 cut(s)	42, 60
CviAII	CATG	2 cut(s)	250, 353
CviJI	RGCY	8 cut(s)	215, 266, 311, 323, 376, 437, 454, 464
CviKI_1	RGCY	8 cut(s)	215, 266, 311, 323, 376, 437, 454, 464
CviQI	GTAC	2 cut(s)	42, 60
DdeI	CTNAG	5 cut(s)	8, 216, 267, 542, 549
DpnI	GATC	2 cut(s)	336, 342
DpnII	GATC	2 cut(s)	334, 340
Eam1104I	CTCTTC	2 cut(s)	43, 105
EarI	CTCTTC	2 cut(s)	43, 105
Ecl136II	GAGCTC	1 cut(s)	266
Eco24I	GRGCYC	1 cut(s)	268
Eco47I	GGWCC	2 cut(s)	526, 554
Eco53kI	GAGCTC	1 cut(s)	266
Eco57I	CTGAAG	1 cut(s)	159
Eco88I	CYCGRG	1 cut(s)	261
EcoICRI	GAGCTC	1 cut(s)	266
EcoO109I	RGGNCCY	2 cut(s)	526, 554
EcoRII	CCWGG	1 cut(s)	484
EcoT38I	GRGCYC	1 cut(s)	268
FaeI	CATG	2 cut(s)	253, 356
FaiI	YATR	8 cut(s)	24, 55, 57, 210, 251, 354, 600, 635
FalI	AAGNNNNNCTT	2 cut(s)	608, 640
FaqI	GGGAC	1 cut(s)	567
FatI	CATG	2 cut(s)	249, 352
Fnu4HI	GCNGC	1 cut(s)	465
FokI	GGATG	3 cut(s)	233, 431, 607
FriOI	GRGCYC	1 cut(s)	268
Fsp4HI	GCNGC	1 cut(s)	465
FspBI	CTAG	2 cut(s)	338, 649
GluI	GCNGC	1 cut(s)	465
GsuI	CTGGAG	1 cut(s)	72
Hin1II	CATG	2 cut(s)	253, 356
HindIII	AAGCTT	1 cut(s)	452
HinfI	GANTC	4 cut(s)	149, 197, 257, 498
HphI	GGTGA	2 cut(s)	143, 380
Hpy166II	GTNNAC	1 cut(s)	646
Hpy188I	TCNGA	1 cut(s)	298
Hpy188III	TCNNGA	6 cut(s)	89, 261, 269, 338, 502, 514
Hpy8I	GTNNAC	1 cut(s)	646
HpyAV	CCTTC	3 cut(s)	11, 301, 564
HpyCH4V	TGCA	3 cut(s)	191, 422, 467
HpyF10VI	GCNNNNNNNGC	2 cut(s)	400, 610
HpyF3I	CTNAG	5 cut(s)	8, 216, 267, 542, 549
Hsp92II	CATG	2 cut(s)	253, 356
KflI	GGGWCCC	1 cut(s)	554
Kzo9I	GATC	2 cut(s)	334, 340
LguI	GCTCTTC	1 cut(s)	43
LmnI	GCTCC	1 cut(s)	388
Lsp1109I	GCAGC	1 cut(s)	451
LweI	GCATC	2 cut(s)	124, 409
MaeI	CTAG	2 cut(s)	338, 649
MaeIII	GTNAC	2 cut(s)	235, 473
MalI	GATC	2 cut(s)	336, 342
MboI	GATC	2 cut(s)	334, 340
MboII	GAAGA	4 cut(s)	60, 122, 152, 579
MflI	RGATCY	2 cut(s)	334, 340
MhlI	GDGCHC	2 cut(s)	268, 550
MluCI	AATT	3 cut(s)	285, 292, 509
MlyI	GAGTC	1 cut(s)	206
MmeI	TCCRAC	1 cut(s)	396
MnlI	CCTC	4 cut(s)	15, 211, 270, 396
MroXI	GAANNNNTTC	1 cut(s)	509
MseI	TTAA	4 cut(s)	203, 365, 450, 534
MslI	CAYNNNNRTG	1 cut(s)	625
MspCI	CTTAAG	1 cut(s)	533
MspR9I	CCNGG	1 cut(s)	486
Mva1269I	GAATGC	1 cut(s)	193
MvaI	CCWGG	1 cut(s)	486
MwoI	GCNNNNNNNGC	2 cut(s)	400, 610
NdeII	GATC	2 cut(s)	334, 340
NlaIII	CATG	2 cut(s)	253, 356
NlaIV	GGNNCC	3 cut(s)	528, 555, 556
NmuCI	GTSAC	1 cut(s)	235
PaqCI	CACCTGC	1 cut(s)	399
PciSI	GCTCTTC	1 cut(s)	43
PcsI	WCGNNNNNNNCGW	1 cut(s)	37
PctI	GAATGC	1 cut(s)	193
PdmI	GAANNNNTTC	1 cut(s)	509
PfeI	GAWTC	3 cut(s)	149, 257, 498
PkrI	GCNGC	1 cut(s)	466
PleI	GAGTC	1 cut(s)	205
PpsI	GAGTC	1 cut(s)	205
PpuMI	RGGWCCY	2 cut(s)	526, 554
Psp124BI	GAGCTC	1 cut(s)	268
Psp5II	RGGWCCY	2 cut(s)	526, 554
Psp6I	CCWGG	1 cut(s)	484
PspGI	CCWGG	1 cut(s)	484
PspN4I	GGNNCC	3 cut(s)	528, 555, 556
PspPI	GGNCC	2 cut(s)	526, 554
PspPPI	RGGWCCY	2 cut(s)	526, 554
PsuI	RGATCY	2 cut(s)	334, 340
RsaI	GTAC	2 cut(s)	43, 61
RsaNI	GTAC	2 cut(s)	42, 60
RseI	CAYNNNNRTG	1 cut(s)	625
SacI	GAGCTC	1 cut(s)	268
SapI	GCTCTTC	1 cut(s)	43
SaqAI	TTAA	4 cut(s)	203, 365, 450, 534
SatI	GCNGC	1 cut(s)	465
Sau3AI	GATC	2 cut(s)	334, 340
Sau96I	GGNCC	2 cut(s)	526, 554
ScaI	AGTACT	1 cut(s)	61
SchI	GAGTC	1 cut(s)	206
ScrFI	CCNGG	1 cut(s)	486
SduI	GDGCHC	2 cut(s)	268, 550
SetI	ASST	6 cut(s)	217, 268, 363, 393, 456, 466
SfaNI	GCATC	2 cut(s)	124, 409
SinI	GGWCC	2 cut(s)	526, 554
SmiMI	CAYNNNNRTG	1 cut(s)	625
SmlI	CTYRAG	1 cut(s)	533
SmoI	CTYRAG	1 cut(s)	533
Sse9I	AATT	3 cut(s)	285, 292, 509
SspMI	CTAG	2 cut(s)	338, 649
SstI	GAGCTC	1 cut(s)	268
StyD4I	CCNGG	1 cut(s)	484
TasI	AATT	3 cut(s)	285, 292, 509
TatI	WGTACW	1 cut(s)	59
TfiI	GAWTC	3 cut(s)	149, 257, 498
Tru1I	TTAA	4 cut(s)	203, 365, 450, 534
Tru9I	TTAA	4 cut(s)	203, 365, 450, 534
TscAI	CASTG	2 cut(s)	198, 550
TseFI	GTSAC	1 cut(s)	235
TseI	GCWGC	1 cut(s)	464
Tsp45I	GTSAC	1 cut(s)	235
TspDTI	ATGAA	3 cut(s)	17, 113, 297
TspRI	CASTG	2 cut(s)	198, 550
Vha464I	CTTAAG	1 cut(s)	533
VpaK11BI	GGWCC	2 cut(s)	526, 554
XapI	RAATTY	2 cut(s)	285, 509
XbaI	TCTAGA	1 cut(s)	337
XcmI	CCANNNNNNNNNTGG	1 cut(s)	190
XmnI	GAANNNNTTC	1 cut(s)	509
XspI	CTAG	2 cut(s)	338, 649
ZrmI	AGTACT	1 cut(s)	61

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.