Rroxscaffold_5G00346460

Cell division

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
Physical Location & Seq
Reverse (-)
17308747 .. 17309031
285 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00346460.1

Sequence Viewer

Length: 207 bp
ATGACCGATAAAGCCGAATCGTCCGACCCGGATTTTGATTTCGATGCGATTGCTTTGAAAATTGTTGCAATAAGGGGACCAAGAGGGATTTCAAGACCGCGATTCTCGAGCGGAAGAAGGCAAGTAAATGTCCTCGTTGTCGATGAGGCCATCTACGATGACAACTCCGTCGTCACTCTCGACCCCGAGACCATGGAGAAGCTTTAG

Protein Analysis

68

Amino Acids

7.57

Weight (kDa)

4.55

Isoelectric Point (pI)

24.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000528)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G49650
fragaria_vesca FvH4_1g18770 FvH4_1g18770 FvH4_7g34230
malus_domestica MD01G1046900.v1.1 MD15G1305400.v1.1 MD16G1282300.v1.1
prunus_persica Prupe.6G211700_v2.0.a1 Prupe.6G211700_v2.0.a1
pyrus_communis pycom01g07280 pycom15g26860 pycom16g25190 pycom16g25200
rosa_chinensis RchiOBHm_Chr1g0351151 RchiOBHm_Chr2g0109641 RchiOBHm_Chr4g0386971 RchiOBHm_Chr4g0413031 RchiOBHm_Chr4g0429541
rosa_laevigata RLG00000007037 RLG00000009264 RLG00000009427 RLG00000015442 RLG00000017752 RLG00000017990 RLG00000022570 RLG00000028427
rosa_multiflora Rmu_sc0000031.1_g000013 Rmu_sc0000332.1_g000058 Rmu_sc0000346.1_g000014 Rmu_sc0000698.1_g000147 Rmu_sc0001152.1_g000047 Rmu_sc0001494.1_g000003 Rmu_sc0002254.1_g000001 Rmu_sc0002531.1_g000001 Rmu_sc0002717.1_g000016 Rmu_sc0002717.1_g000017 Rmu_sc0003220.1_g000024 Rmu_sc0005016.1_g000007 Rmu_sc0005608.1_g000020 Rmu_sc0010686.1_g000003 Rmu_sc0011012.1_g000011 Rmu_sc0021503.1_g000001
rosa_roxburghii Rroxscaffold_2G00082300 Rroxscaffold_2G00099190 Rroxscaffold_2G00129660 Rroxscaffold_2G00134070 Rroxscaffold_3G00236170 Rroxscaffold_5G00346460 Rroxscaffold_7G00156600 Rroxscaffold_7G00205430
rosa_rugosa Rorug01G0267800 Rorug02G0020700 Rorug02G0020700 Rorug02G0161500 Rorug02G0384900 Rorug05G0567000
rosa_samantha Rh1AG062400 Rh1AG132200 Rh1AG231500 Rh1CG126100 Rh1CG184600 Rh1CG215600 Rh1CG237400 Rh2AG213700 Rh2BG068400 Rh2BG224100 Rh2BG239600 Rh2CG069600 Rh2CG216000 Rh2CG585300 Rh2DG067600 Rh2DG219200 Rh4AG177200 Rh5AG509600 Rh5BG290500 Rh5BG328900 Rh5DG300300 Rh5DG340100 Rh6BG103200 Rh7DG421500
rosa_wichuraiana Rw1G006030 Rw1G006580 Rw2G006320 Rw5G004390 Rw5G029130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 167
AccBSI CCGCTC 1 cut(s) 111
AccII CGCG 1 cut(s) 100
AciI CCGC 2 cut(s) 98, 111
AgsI TTSAA 2 cut(s) 58, 93
AjuI GAANNNNNNNTTGG 2 cut(s) 73, 105
AluBI AGCT 1 cut(s) 202
AluI AGCT 1 cut(s) 202
Alw26I GTCTC 1 cut(s) 182
Ama87I CYCGRG 2 cut(s) 106, 185
AoxI GGCC 1 cut(s) 147
ArsI GACNNNNNNTTYG 2 cut(s) 17, 49
AspS9I GGNCC 1 cut(s) 77
AsuC2I CCSGG 1 cut(s) 29
AvaI CYCGRG 2 cut(s) 106, 185
AvaII GGWCC 1 cut(s) 77
BccI CCATC 1 cut(s) 158
BcgI CGANNNNNNTGC 2 cut(s) 32, 66
BcnI CCSGG 1 cut(s) 29
BcoDI GTCTC 1 cut(s) 182
Bme1390I CCNGG 1 cut(s) 29
Bme18I GGWCC 1 cut(s) 77
BmeT110I CYCGRG 2 cut(s) 106, 185
BmgT120I GGNCC 1 cut(s) 77
BmiI GGNNCC 1 cut(s) 78
BmrFI CCNGG 1 cut(s) 29
BmsI GCATC 1 cut(s) 34
BpuMI CCSGG 1 cut(s) 29
BsaI GGTCTC 1 cut(s) 182
BsaJI CCNNGG 1 cut(s) 192
BseDI CCNNGG 1 cut(s) 192
Bsh1236I CGCG 1 cut(s) 100
BshFI GGCC 1 cut(s) 149
BsiHKCI CYCGRG 2 cut(s) 106, 185
BsiSI CCGG 1 cut(s) 29
BslFI GGGAC 1 cut(s) 90
BsmAI GTCTC 1 cut(s) 182
BsmFI GGGAC 1 cut(s) 90
BsnI GGCC 1 cut(s) 149
Bso31I GGTCTC 1 cut(s) 182
BsoBI CYCGRG 2 cut(s) 106, 185
Bsp19I CCATGG 1 cut(s) 192
BspACI CCGC 2 cut(s) 98, 111
BspANI GGCC 1 cut(s) 149
BspFNI CGCG 1 cut(s) 100
BspLI GGNNCC 1 cut(s) 78
BspTNI GGTCTC 1 cut(s) 182
BsrBI CCGCTC 1 cut(s) 111
BssECI CCNNGG 1 cut(s) 192
BssT1I CCWWGG 1 cut(s) 192
BstDSI CCRYGG 1 cut(s) 192
BstFNI CGCG 1 cut(s) 100
BstMAI GTCTC 1 cut(s) 182
BstSCI CCNGG 1 cut(s) 27
BstUI CGCG 1 cut(s) 100
BsuRI GGCC 1 cut(s) 149
BtgI CCRYGG 1 cut(s) 192
Cfr13I GGNCC 1 cut(s) 77
CviAII CATG 1 cut(s) 193
CviJI RGCY 3 cut(s) 14, 149, 202
CviKI_1 RGCY 3 cut(s) 14, 149, 202
DrdI GACNNNNNNGTC 1 cut(s) 167
DseDI GACNNNNNNGTC 1 cut(s) 167
Eco130I CCWWGG 1 cut(s) 192
Eco31I GGTCTC 1 cut(s) 182
Eco47I GGWCC 1 cut(s) 77
Eco88I CYCGRG 2 cut(s) 106, 185
EcoT14I CCWWGG 1 cut(s) 192
ErhI CCWWGG 1 cut(s) 192
FaeI CATG 1 cut(s) 196
FaiI YATR 1 cut(s) 194
FaqI GGGAC 1 cut(s) 90
FatI CATG 1 cut(s) 192
HaeIII GGCC 1 cut(s) 149
HapII CCGG 1 cut(s) 29
Hin1II CATG 1 cut(s) 196
HindIII AAGCTT 1 cut(s) 200
HinfI GANTC 2 cut(s) 17, 102
HpaII CCGG 1 cut(s) 29
Hpy188I TCNGA 1 cut(s) 25
Hpy188III TCNNGA 3 cut(s) 93, 106, 179
Hpy99I CGWCG 1 cut(s) 173
HpyAV CCTTC 1 cut(s) 111
HpyCH4V TGCA 1 cut(s) 68
Hsp92II CATG 1 cut(s) 196
LpnPI CCDG 1 cut(s) 42
LweI GCATC 1 cut(s) 34
MaeIII GTNAC 1 cut(s) 172
MbiI CCGCTC 1 cut(s) 111
MboII GAAGA 1 cut(s) 126
MluCI AATT 1 cut(s) 60
MmeI TCCRAC 1 cut(s) 48
MnlI CCTC 3 cut(s) 77, 139, 143
MspI CCGG 1 cut(s) 29
MspR9I CCNGG 1 cut(s) 29
MvnI CGCG 1 cut(s) 100
NciI CCSGG 1 cut(s) 29
NcoI CCATGG 1 cut(s) 192
NlaIII CATG 1 cut(s) 196
NlaIV GGNNCC 1 cut(s) 78
NmuCI GTSAC 1 cut(s) 172
PaeR7I CTCGAG 1 cut(s) 106
PcsI WCGNNNNNNNCGW 1 cut(s) 177
PfeI GAWTC 2 cut(s) 17, 102
PspN4I GGNNCC 1 cut(s) 78
PspPI GGNCC 1 cut(s) 77
Sau96I GGNCC 1 cut(s) 77
ScrFI CCNGG 1 cut(s) 29
SetI ASST 1 cut(s) 204
SfaNI GCATC 1 cut(s) 34
Sfr274I CTCGAG 1 cut(s) 106
SinI GGWCC 1 cut(s) 77
SlaI CTCGAG 1 cut(s) 106
SmlI CTYRAG 1 cut(s) 106
SmoI CTYRAG 1 cut(s) 106
Sse9I AATT 1 cut(s) 60
SsiI CCGC 2 cut(s) 98, 111
StyD4I CCNGG 1 cut(s) 27
StyI CCWWGG 1 cut(s) 192
TaqI TCGA 4 cut(s) 42, 107, 141, 180
TaqII GACCGA 1 cut(s) 20
TasI AATT 1 cut(s) 60
TfiI GAWTC 2 cut(s) 17, 102
TseFI GTSAC 1 cut(s) 172
Tsp45I GTSAC 1 cut(s) 172
TspGWI ACGGA 1 cut(s) 157
VpaK11BI GGWCC 1 cut(s) 77
XhoI CTCGAG 1 cut(s) 106
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.