Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010686.1

Orthogroup ID

OG0000528

Physical Location & Seq

Genomic Coordinates Forward (+)

9612 .. 11788

Gene Structure 2177 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010686.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

atgacatttcgcaaaatcctcaccaccgtcatttgtcaacaggaattcaatgctggtctttttgattacttgattgcaactgatgacagtgaaacaaaggagaaaaaagaaaatgatcagaaaaagattgattcaaaaaattctagacgacatgctaaacccaaacccaaagctgactctgaatttggagtggtgcgaggaattgacttcaaaaatgtacacacggttctgaattttgatatgcctctaagtgttgaaggatatgttcatcatctgttgaaacatgacaaggttttgagcaagaagccccctgctcctcacctgcgagttgtgcctgattatctgttggatgcaacaactaaagaagccagcaagagagttaagcttgcgagagctgcaatgggtaacaacaaccttggtcgccgcggattgaagaaaaaattcaagaaagataaggacccccttaagtctctcagtgctcaggtatactttagcttcctttttgtacttatttcttcatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010467 GO:0010501 GO:0016070 GO:0016072 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022613 GO:0031974 GO:0031981 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0071840 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

173

Amino Acids

19.71

Weight (kDa)

9.85

Isoelectric Point (pI)

26.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000528)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49650
fragaria_vesca	FvH4_1g18770 FvH4_1g18770 FvH4_7g34230
malus_domestica	MD01G1046900.v1.1 MD15G1305400.v1.1 MD16G1282300.v1.1
prunus_persica	Prupe.6G211700_v2.0.a1 Prupe.6G211700_v2.0.a1
pyrus_communis	pycom01g07280 pycom15g26860 pycom16g25190 pycom16g25200
rosa_chinensis	RchiOBHm_Chr1g0351151 RchiOBHm_Chr2g0109641 RchiOBHm_Chr4g0386971 RchiOBHm_Chr4g0413031 RchiOBHm_Chr4g0429541
rosa_laevigata	RLG00000007037 RLG00000009264 RLG00000009427 RLG00000015442 RLG00000017752 RLG00000017990 RLG00000022570 RLG00000028427
rosa_multiflora	Rmu_sc0000031.1_g000013 Rmu_sc0000332.1_g000058 Rmu_sc0000346.1_g000014 Rmu_sc0000698.1_g000147 Rmu_sc0001152.1_g000047 Rmu_sc0001494.1_g000003 Rmu_sc0002254.1_g000001 Rmu_sc0002531.1_g000001 Rmu_sc0002717.1_g000016 Rmu_sc0002717.1_g000017 Rmu_sc0003220.1_g000024 Rmu_sc0005016.1_g000007 Rmu_sc0005608.1_g000020 Rmu_sc0010686.1_g000003 Rmu_sc0011012.1_g000011 Rmu_sc0021503.1_g000001
rosa_roxburghii	Rroxscaffold_2G00082300 Rroxscaffold_2G00099190 Rroxscaffold_2G00129660 Rroxscaffold_2G00134070 Rroxscaffold_3G00236170 Rroxscaffold_5G00346460 Rroxscaffold_7G00156600 Rroxscaffold_7G00205430
rosa_rugosa	Rorug01G0267800 Rorug02G0020700 Rorug02G0020700 Rorug02G0161500 Rorug02G0384900 Rorug05G0567000
rosa_samantha	Rh1AG062400 Rh1AG132200 Rh1AG231500 Rh1CG126100 Rh1CG184600 Rh1CG215600 Rh1CG237400 Rh2AG213700 Rh2BG068400 Rh2BG224100 Rh2BG239600 Rh2CG069600 Rh2CG216000 Rh2CG585300 Rh2DG067600 Rh2DG219200 Rh4AG177200 Rh5AG509600 Rh5BG290500 Rh5BG328900 Rh5DG300300 Rh5DG340100 Rh6BG103200 Rh7DG421500
rosa_wichuraiana	Rw1G006030 Rw1G006580 Rw2G006320 Rw5G004390 Rw5G029130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	330
Acc36I	ACCTGC	1 cut(s)	330
AccI	GTMKAC	1 cut(s)	486
AccII	CGCG	1 cut(s)	426
AciI	CCGC	2 cut(s)	424, 426
AcsI	RAATTY	5 cut(s)	44, 139, 182, 232, 440
AfaI	GTAC	2 cut(s)	219, 507
AflII	CTTAAG	1 cut(s)	464
AgsI	TTSAA	7 cut(s)	49, 135, 211, 257, 280, 433, 445
AluBI	AGCT	4 cut(s)	173, 385, 395, 495
AluI	AGCT	4 cut(s)	173, 385, 395, 495
Alw21I	GWGCWC	1 cut(s)	481
Alw26I	GTCTC	1 cut(s)	474
ApeKI	GCWGC	1 cut(s)	395
ApoI	RAATTY	5 cut(s)	44, 139, 182, 232, 440
ArsI	GACNNNNNNTTYG	2 cut(s)	167, 199
Asp700I	GAANNNNTTC	1 cut(s)	440
AspS9I	GGNCC	1 cut(s)	457
AsuHPI	GGTGA	2 cut(s)	13, 311
AvaII	GGWCC	1 cut(s)	457
Bbv12I	GWGCWC	1 cut(s)	481
BbvI	GCAGC	1 cut(s)	382
BclI	TGATCA	1 cut(s)	115
BcoDI	GTCTC	1 cut(s)	474
BfaI	CTAG	1 cut(s)	144
BfrI	CTTAAG	1 cut(s)	464
BfuAI	ACCTGC	1 cut(s)	330
BisI	GCNGC	2 cut(s)	396, 424
BlsI	GCNGC	2 cut(s)	397, 425
Bme18I	GGWCC	1 cut(s)	457
BmgT120I	GGNCC	1 cut(s)	457
BmiI	GGNNCC	1 cut(s)	459
BmsI	GCATC	1 cut(s)	340
Bpu10I	CCTNAGC	1 cut(s)	480
BsaJI	CCNNGG	2 cut(s)	415, 424
Bse3DI	GCAATG	1 cut(s)	405
BseDI	CCNNGG	2 cut(s)	415, 424
BseGI	GGATG	1 cut(s)	355
BseMI	GCAATG	1 cut(s)	405
BseMII	CTCAG	2 cut(s)	487, 494
BseRI	GAGGAG	1 cut(s)	306
BseXI	GCAGC	1 cut(s)	382
Bsh1236I	CGCG	1 cut(s)	426
BsiHKAI	GWGCWC	1 cut(s)	481
BsmAI	GTCTC	1 cut(s)	474
Bsp1286I	GDGCHC	1 cut(s)	481
Bsp1407I	TGTACA	1 cut(s)	217
Bsp143I	GATC	1 cut(s)	115
BspACI	CCGC	2 cut(s)	424, 426
BspCNI	CTCAG	2 cut(s)	486, 493
BspFNI	CGCG	1 cut(s)	426
BspHI	TCATGA	1 cut(s)	518
BspLI	GGNNCC	1 cut(s)	459
BspMI	ACCTGC	1 cut(s)	330
BspTI	CTTAAG	1 cut(s)	464
BsrDI	GCAATG	1 cut(s)	405
BsrGI	TGTACA	1 cut(s)	217
BssECI	CCNNGG	2 cut(s)	415, 424
BssMI	GATC	1 cut(s)	115
BssNAI	GTATAC	1 cut(s)	487
BssT1I	CCWWGG	1 cut(s)	415
Bst1107I	GTATAC	1 cut(s)	487
Bst4CI	ACNGT	3 cut(s)	28, 89, 226
BstAFI	CTTAAG	1 cut(s)	464
BstAUI	TGTACA	1 cut(s)	217
BstC8I	GCNNGC	2 cut(s)	370, 387
BstDEI	CTNAG	3 cut(s)	248, 473, 480
BstDSI	CCRYGG	1 cut(s)	424
BstF5I	GGATG	1 cut(s)	355
BstFNI	CGCG	1 cut(s)	426
BstKTI	GATC	1 cut(s)	118
BstMAI	GTCTC	1 cut(s)	474
BstMBI	GATC	1 cut(s)	115
BstMWI	GCNNNNNNNGC	2 cut(s)	331, 395
BstNSI	RCATGY	1 cut(s)	155
BstUI	CGCG	1 cut(s)	426
BstV1I	GCAGC	1 cut(s)	382
BstZ17I	GTATAC	1 cut(s)	487
BtgI	CCRYGG	1 cut(s)	424
BtsCI	GGATG	1 cut(s)	355
BtsIMutI	CAGTG	2 cut(s)	94, 481
BveI	ACCTGC	1 cut(s)	330
Cac8I	GCNNGC	2 cut(s)	370, 387
CciI	TCATGA	1 cut(s)	518
Cfr13I	GGNCC	1 cut(s)	457
Cfr42I	CCGCGG	1 cut(s)	427
Csp6I	GTAC	2 cut(s)	218, 506
CviAII	CATG	3 cut(s)	152, 284, 519
CviJI	RGCY	6 cut(s)	173, 307, 368, 385, 395, 495
CviKI_1	RGCY	6 cut(s)	173, 307, 368, 385, 395, 495
CviQI	GTAC	2 cut(s)	218, 506
DdeI	CTNAG	3 cut(s)	248, 473, 480
DpnI	GATC	1 cut(s)	117
DpnII	GATC	1 cut(s)	115
Eco130I	CCWWGG	1 cut(s)	415
Eco47I	GGWCC	1 cut(s)	457
EcoO109I	RGGNCCY	1 cut(s)	457
EcoRI	GAATTC	1 cut(s)	44
EcoT14I	CCWWGG	1 cut(s)	415
ErhI	CCWWGG	1 cut(s)	415
FaeI	CATG	3 cut(s)	155, 287, 522
FaiI	YATR	6 cut(s)	153, 242, 264, 285, 487, 520
FatI	CATG	3 cut(s)	151, 283, 518
FbaI	TGATCA	1 cut(s)	115
FblI	GTMKAC	1 cut(s)	486
Fnu4HI	GCNGC	2 cut(s)	396, 424
FokI	GGATG	1 cut(s)	362
Fsp4HI	GCNGC	2 cut(s)	396, 424
FspBI	CTAG	1 cut(s)	144
GluI	GCNGC	2 cut(s)	396, 424
Hin1II	CATG	3 cut(s)	155, 287, 522
HincII	GTYRAC	1 cut(s)	38
HindII	GTYRAC	1 cut(s)	38
HindIII	AAGCTT	1 cut(s)	383
HinfI	GANTC	2 cut(s)	131, 176
HphI	GGTGA	2 cut(s)	13, 311
Hpy166II	GTNNAC	3 cut(s)	38, 220, 487
Hpy188I	TCNGA	3 cut(s)	120, 181, 231
Hpy188III	TCNNGA	3 cut(s)	144, 445, 519
Hpy8I	GTNNAC	3 cut(s)	38, 220, 487
HpyAV	CCTTC	1 cut(s)	251
HpyCH4III	ACNGT	3 cut(s)	28, 89, 226
HpyCH4V	TGCA	3 cut(s)	77, 353, 398
HpyF10VI	GCNNNNNNNGC	2 cut(s)	331, 395
HpyF3I	CTNAG	3 cut(s)	248, 473, 480
Hsp92II	CATG	3 cut(s)	155, 287, 522
Ksp22I	TGATCA	1 cut(s)	115
KspI	CCGCGG	1 cut(s)	427
Kzo9I	GATC	1 cut(s)	115
LmnI	GCTCC	1 cut(s)	319
LpnPI	CCDG	7 cut(s)	26, 39, 324, 335, 348, 382, 467
Lsp1109I	GCAGC	1 cut(s)	382
LweI	GCATC	1 cut(s)	340
MaeI	CTAG	1 cut(s)	144
MaeIII	GTNAC	1 cut(s)	404
MalI	GATC	1 cut(s)	117
MboI	GATC	1 cut(s)	115
MboII	GAAGA	2 cut(s)	445, 507
MhlI	GDGCHC	1 cut(s)	481
MluCI	AATT	6 cut(s)	44, 139, 182, 201, 232, 440
MlyI	GAGTC	1 cut(s)	170
MmeI	TCCRAC	1 cut(s)	327
MnlI	CCTC	4 cut(s)	29, 191, 255, 327
MroXI	GAANNNNTTC	1 cut(s)	440
MseI	TTAA	2 cut(s)	381, 465
MspA1I	CMGCKG	1 cut(s)	426
MspCI	CTTAAG	1 cut(s)	464
MvnI	CGCG	1 cut(s)	426
MwoI	GCNNNNNNNGC	2 cut(s)	331, 395
NdeII	GATC	1 cut(s)	115
NlaIII	CATG	3 cut(s)	155, 287, 522
NlaIV	GGNNCC	1 cut(s)	459
NspI	RCATGY	1 cut(s)	155
PagI	TCATGA	1 cut(s)	518
PaqCI	CACCTGC	1 cut(s)	330
PdmI	GAANNNNTTC	1 cut(s)	440
PfeI	GAWTC	1 cut(s)	131
PkrI	GCNGC	2 cut(s)	397, 425
PleI	GAGTC	1 cut(s)	170
PpsI	GAGTC	1 cut(s)	170
PpuMI	RGGWCCY	1 cut(s)	457
Psp5II	RGGWCCY	1 cut(s)	457
PspN4I	GGNNCC	1 cut(s)	459
PspPI	GGNCC	1 cut(s)	457
PspPPI	RGGWCCY	1 cut(s)	457
PsrI	GAACNNNNNNTAC	2 cut(s)	210, 242
RsaI	GTAC	2 cut(s)	219, 507
RsaNI	GTAC	2 cut(s)	218, 506
SacII	CCGCGG	1 cut(s)	427
SaqAI	TTAA	2 cut(s)	381, 465
SatI	GCNGC	2 cut(s)	396, 424
Sau3AI	GATC	1 cut(s)	115
Sau96I	GGNCC	1 cut(s)	457
SchI	GAGTC	1 cut(s)	170
SduI	GDGCHC	1 cut(s)	481
SetI	ASST	8 cut(s)	175, 294, 324, 387, 397, 417, 486, 497
SfaNI	GCATC	1 cut(s)	340
Sfr303I	CCGCGG	1 cut(s)	427
SgrBI	CCGCGG	1 cut(s)	427
SinI	GGWCC	1 cut(s)	457
SmlI	CTYRAG	1 cut(s)	464
SmoI	CTYRAG	1 cut(s)	464
Sse9I	AATT	6 cut(s)	44, 139, 182, 201, 232, 440
SsiI	CCGC	2 cut(s)	424, 426
SspMI	CTAG	1 cut(s)	144
StyI	CCWWGG	1 cut(s)	415
TaaI	ACNGT	3 cut(s)	28, 89, 226
TasI	AATT	6 cut(s)	44, 139, 182, 201, 232, 440
TatI	WGTACW	2 cut(s)	217, 505
TauI	GCSGC	1 cut(s)	426
TfiI	GAWTC	1 cut(s)	131
Tru1I	TTAA	2 cut(s)	381, 465
Tru9I	TTAA	2 cut(s)	381, 465
TscAI	CASTG	2 cut(s)	94, 481
TseI	GCWGC	1 cut(s)	395
TspDTI	ATGAA	2 cut(s)	257, 507
TspRI	CASTG	2 cut(s)	94, 481
Vha464I	CTTAAG	1 cut(s)	464
VpaK11BI	GGWCC	1 cut(s)	457
XapI	RAATTY	5 cut(s)	44, 139, 182, 232, 440
XbaI	TCTAGA	1 cut(s)	143
XceI	RCATGY	1 cut(s)	155
XmiI	GTMKAC	1 cut(s)	486
XmnI	GAANNNNTTC	1 cut(s)	440
XspI	CTAG	1 cut(s)	144

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.