RLG00000009264

Cell division

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
Physical Location & Seq
Reverse (-)
49919453 .. 49923898
4446 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000009264

Sequence Viewer

Length: 396 bp
ATGACGACGGCAAAAGCAGACCGGAGCGCTGCGGATGTCCGACGAAGGCTAGAGCTCATCGCGGCTCTCTTAGGATATTTTTACGCGATTTTCTTTTATAACATTATCTCTTTAATTAATAATCTGAGGGATCAAAGAGATTTCAACACTGCGTTTCTGGAGCGCAAGGAGGCTGCGAATCGGCTTGTGGTGGAAGAAGCCATCGACTATTGCAACTCGATCTTCGTGCTTCACCCCGAGACCATGGAGAAGCTCCAGCGACAACACAATCAGGACAAAGACTTAGAAGCCTTCAAAACAAGTCGGGACATAAATACTGTATTCTTGTCAAAGTATTCGCCAACTTCACGTTTGGAAGTTGGGGAAGATGGCAACATGGACTCCCCCCCTAATTGA

Protein Analysis

132

Amino Acids

15.15

Weight (kDa)

5.4

Isoelectric Point (pI)

49.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000528)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G49650
fragaria_vesca FvH4_1g18770 FvH4_1g18770 FvH4_7g34230
malus_domestica MD01G1046900.v1.1 MD15G1305400.v1.1 MD16G1282300.v1.1
prunus_persica Prupe.6G211700_v2.0.a1 Prupe.6G211700_v2.0.a1
pyrus_communis pycom01g07280 pycom15g26860 pycom16g25190 pycom16g25200
rosa_chinensis RchiOBHm_Chr1g0351151 RchiOBHm_Chr2g0109641 RchiOBHm_Chr4g0386971 RchiOBHm_Chr4g0413031 RchiOBHm_Chr4g0429541
rosa_laevigata RLG00000007037 RLG00000009264 RLG00000009427 RLG00000015442 RLG00000017752 RLG00000017990 RLG00000022570 RLG00000028427
rosa_multiflora Rmu_sc0000031.1_g000013 Rmu_sc0000332.1_g000058 Rmu_sc0000346.1_g000014 Rmu_sc0000698.1_g000147 Rmu_sc0001152.1_g000047 Rmu_sc0001494.1_g000003 Rmu_sc0002254.1_g000001 Rmu_sc0002531.1_g000001 Rmu_sc0002717.1_g000016 Rmu_sc0002717.1_g000017 Rmu_sc0003220.1_g000024 Rmu_sc0005016.1_g000007 Rmu_sc0005608.1_g000020 Rmu_sc0010686.1_g000003 Rmu_sc0011012.1_g000011 Rmu_sc0021503.1_g000001
rosa_roxburghii Rroxscaffold_2G00082300 Rroxscaffold_2G00099190 Rroxscaffold_2G00129660 Rroxscaffold_2G00134070 Rroxscaffold_3G00236170 Rroxscaffold_5G00346460 Rroxscaffold_7G00156600 Rroxscaffold_7G00205430
rosa_rugosa Rorug01G0267800 Rorug02G0020700 Rorug02G0020700 Rorug02G0161500 Rorug02G0384900 Rorug05G0567000
rosa_samantha Rh1AG062400 Rh1AG132200 Rh1AG231500 Rh1CG126100 Rh1CG184600 Rh1CG215600 Rh1CG237400 Rh2AG213700 Rh2BG068400 Rh2BG224100 Rh2BG239600 Rh2CG069600 Rh2CG216000 Rh2CG585300 Rh2DG067600 Rh2DG219200 Rh4AG177200 Rh5AG509600 Rh5BG290500 Rh5BG328900 Rh5DG300300 Rh5DG340100 Rh6BG103200 Rh7DG421500
rosa_wichuraiana Rw1G006030 Rw1G006580 Rw2G006320 Rw5G004390 Rw5G029130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 99
AccII CGCG 2 cut(s) 62, 86
AciI CCGC 2 cut(s) 32, 62
AclWI GGATC 1 cut(s) 138
AfeI AGCGCT 1 cut(s) 28
AgsI TTSAA 2 cut(s) 145, 295
AluBI AGCT 2 cut(s) 55, 253
AluI AGCT 2 cut(s) 55, 253
Alw21I GWGCWC 1 cut(s) 57
Alw26I GTCTC 1 cut(s) 233
AlwI GGATC 1 cut(s) 138
Ama87I CYCGRG 1 cut(s) 236
Aor51HI AGCGCT 1 cut(s) 28
ApeKI GCWGC 2 cut(s) 29, 173
AseI ATTAAT 1 cut(s) 117
AspLEI GCGC 2 cut(s) 29, 165
AsuHPI GGTGA 1 cut(s) 224
AvaI CYCGRG 1 cut(s) 236
BanII GRGCYC 1 cut(s) 57
Bbv12I GWGCWC 1 cut(s) 57
BbvI GCAGC 2 cut(s) 16, 160
BccI CCATC 2 cut(s) 209, 362
BceAI ACGGC 1 cut(s) 24
BcgI CGANNNNNNTGC 2 cut(s) 208, 242
BcoDI GTCTC 1 cut(s) 233
BfaI CTAG 1 cut(s) 50
BfoI RGCGCY 1 cut(s) 30
BisI GCNGC 3 cut(s) 30, 63, 174
BlsI GCNGC 3 cut(s) 31, 64, 175
BmeT110I CYCGRG 1 cut(s) 236
BpmI CTGGAG 2 cut(s) 179, 239
BsaI GGTCTC 1 cut(s) 233
BsaJI CCNNGG 1 cut(s) 243
BsaWI WCCGGW 1 cut(s) 21
BsaXI ACNNNNNCTCC 2 cut(s) 365, 395
BseDI CCNNGG 1 cut(s) 243
BseGI GGATG 1 cut(s) 40
BseMII CTCAG 1 cut(s) 116
BseXI GCAGC 2 cut(s) 16, 160
Bsh1236I CGCG 2 cut(s) 62, 86
BsiHKAI GWGCWC 1 cut(s) 57
BsiHKCI CYCGRG 1 cut(s) 236
BsiSI CCGG 1 cut(s) 22
BslFI GGGAC 1 cut(s) 320
BsmAI GTCTC 1 cut(s) 233
BsmFI GGGAC 1 cut(s) 320
Bso31I GGTCTC 1 cut(s) 233
BsoBI CYCGRG 1 cut(s) 236
Bsp1286I GDGCHC 1 cut(s) 57
Bsp143I GATC 2 cut(s) 130, 219
Bsp19I CCATGG 1 cut(s) 243
BspACI CCGC 2 cut(s) 32, 62
BspCNI CTCAG 1 cut(s) 117
BspFNI CGCG 2 cut(s) 62, 86
BspPI GGATC 1 cut(s) 138
BspTNI GGTCTC 1 cut(s) 233
BssECI CCNNGG 1 cut(s) 243
BssMI GATC 2 cut(s) 130, 219
BssT1I CCWWGG 1 cut(s) 243
Bst4CI ACNGT 1 cut(s) 319
BstDEI CTNAG 3 cut(s) 70, 125, 283
BstDSI CCRYGG 1 cut(s) 243
BstF5I GGATG 1 cut(s) 40
BstFNI CGCG 2 cut(s) 62, 86
BstH2I RGCGCY 1 cut(s) 30
BstHHI GCGC 2 cut(s) 29, 165
BstKTI GATC 2 cut(s) 133, 222
BstMAI GTCTC 1 cut(s) 233
BstMBI GATC 2 cut(s) 130, 219
BstUI CGCG 2 cut(s) 62, 86
BstV1I GCAGC 2 cut(s) 16, 160
BtgI CCRYGG 1 cut(s) 243
BtgZI GCGATG 1 cut(s) 43
BtsCI GGATG 1 cut(s) 40
BtsI GCAGTG 1 cut(s) 147
BtsIMutI CAGTG 1 cut(s) 147
CfoI GCGC 2 cut(s) 29, 165
CviAII CATG 2 cut(s) 244, 376
CviJI RGCY 8 cut(s) 49, 55, 65, 173, 184, 200, 253, 290
CviKI_1 RGCY 8 cut(s) 49, 55, 65, 173, 184, 200, 253, 290
DdeI CTNAG 3 cut(s) 70, 125, 283
DpnI GATC 2 cut(s) 132, 221
DpnII GATC 2 cut(s) 130, 219
Ecl136II GAGCTC 1 cut(s) 55
Eco130I CCWWGG 1 cut(s) 243
Eco24I GRGCYC 1 cut(s) 57
Eco31I GGTCTC 1 cut(s) 233
Eco47III AGCGCT 1 cut(s) 28
Eco53kI GAGCTC 1 cut(s) 55
Eco88I CYCGRG 1 cut(s) 236
EcoICRI GAGCTC 1 cut(s) 55
EcoT14I CCWWGG 1 cut(s) 243
EcoT38I GRGCYC 1 cut(s) 57
ErhI CCWWGG 1 cut(s) 243
FaeI CATG 2 cut(s) 247, 379
FaiI YATR 4 cut(s) 99, 245, 311, 377
FaqI GGGAC 1 cut(s) 320
FatI CATG 2 cut(s) 243, 375
Fnu4HI GCNGC 3 cut(s) 30, 63, 174
FokI GGATG 1 cut(s) 47
FriOI GRGCYC 1 cut(s) 57
Fsp4HI GCNGC 3 cut(s) 30, 63, 174
FspBI CTAG 1 cut(s) 50
GlaI GCGC 2 cut(s) 28, 164
GluI GCNGC 3 cut(s) 30, 63, 174
GsuI CTGGAG 2 cut(s) 179, 239
HaeII RGCGCY 1 cut(s) 30
HapII CCGG 1 cut(s) 22
HhaI GCGC 2 cut(s) 29, 165
Hin1II CATG 2 cut(s) 247, 379
Hin6I GCGC 2 cut(s) 27, 163
HinP1I GCGC 2 cut(s) 27, 163
HinfI GANTC 2 cut(s) 178, 380
HpaII CCGG 1 cut(s) 22
HphI GGTGA 1 cut(s) 224
Hpy188I TCNGA 2 cut(s) 41, 126
Hpy188III TCNNGA 3 cut(s) 158, 272, 305
Hpy99I CGWCG 2 cut(s) 10, 45
HpyAV CCTTC 2 cut(s) 39, 301
HpyCH4III ACNGT 1 cut(s) 319
HpyCH4IV ACGT 1 cut(s) 349
HpyCH4V TGCA 1 cut(s) 213
HpyF3I CTNAG 3 cut(s) 70, 125, 283
HpySE526I ACGT 1 cut(s) 349
Hsp92II CATG 2 cut(s) 247, 379
HspAI GCGC 2 cut(s) 27, 163
Kzo9I GATC 2 cut(s) 130, 219
LmnI GCTCC 3 cut(s) 24, 160, 258
LpnPI CCDG 4 cut(s) 35, 143, 257, 269
Lsp1109I GCAGC 2 cut(s) 16, 160
MaeI CTAG 1 cut(s) 50
MaeII ACGT 1 cut(s) 349
MalI GATC 2 cut(s) 132, 221
MboI GATC 2 cut(s) 130, 219
MboII GAAGA 3 cut(s) 206, 214, 377
MhlI GDGCHC 1 cut(s) 57
MluCI AATT 2 cut(s) 114, 391
MlyI GAGTC 1 cut(s) 374
MmeI TCCRAC 1 cut(s) 64
MnlI CCTC 2 cut(s) 120, 163
MseI TTAA 2 cut(s) 113, 117
MspI CCGG 1 cut(s) 22
MvnI CGCG 2 cut(s) 62, 86
NcoI CCATGG 1 cut(s) 243
NdeII GATC 2 cut(s) 130, 219
NlaIII CATG 2 cut(s) 247, 379
PacI TTAATTAA 1 cut(s) 117
PfeI GAWTC 1 cut(s) 178
PkrI GCNGC 3 cut(s) 31, 64, 175
PleI GAGTC 1 cut(s) 374
PpsI GAGTC 1 cut(s) 374
PshBI ATTAAT 1 cut(s) 117
PsiI TTATAA 1 cut(s) 99
Psp124BI GAGCTC 1 cut(s) 57
SacI GAGCTC 1 cut(s) 57
SaqAI TTAA 2 cut(s) 113, 117
SatI GCNGC 3 cut(s) 30, 63, 174
Sau3AI GATC 2 cut(s) 130, 219
SchI GAGTC 1 cut(s) 374
SduI GDGCHC 1 cut(s) 57
SetI ASST 3 cut(s) 57, 255, 352
Sse9I AATT 2 cut(s) 114, 391
SsiI CCGC 2 cut(s) 32, 62
SspMI CTAG 1 cut(s) 50
SstI GAGCTC 1 cut(s) 57
StyI CCWWGG 1 cut(s) 243
TaaI ACNGT 1 cut(s) 319
TaiI ACGT 1 cut(s) 352
TaqI TCGA 2 cut(s) 204, 218
TasI AATT 2 cut(s) 114, 391
TauI GCSGC 1 cut(s) 65
TfiI GAWTC 1 cut(s) 178
Tru1I TTAA 2 cut(s) 113, 117
Tru9I TTAA 2 cut(s) 113, 117
TscAI CASTG 1 cut(s) 154
TseI GCWGC 2 cut(s) 29, 173
TspRI CASTG 1 cut(s) 154
VspI ATTAAT 1 cut(s) 117
XspI CTAG 1 cut(s) 50
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.