Rroxscaffold_2G00082300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000528
Physical Location & Seq
Reverse (-)
5177513 .. 5181065
3553 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00082300.1

Sequence Viewer

Length: 495 bp
ATGCCATTGTTACCCTCCTCGGCTTATTCGTCATCGACTTGGTCCAGTCCTTCATCTCACGCCCCTCCCACTAGGACAACGACACCGCTGCTGCCCTCCCCTAGCCAAACCCAAAATTTTCGGTGCCAACTCCTCATTGTGCTTCGAGGAGGACGAGGACATCATCTAGGGCGTTCTAAATGGCAGCGTTCAGTCTTAGTGTCTCGAATCAAAGCTCGGCGACTGCAAGAGAGCGGGGACGATTCGGTGCGAGTGGCTTCAGAGAACGACTGGGAGGTCACTGCAGGGTTTGTAGGATTCGATTACGACTCCATTCTTGGACAGCGCTGCGAGTCGCCGGTCGGAGACGAAAGTTTAAGAAGCAACGAGTTTGTGGGTGGGTTGAAGAACTGTGAATTTCTGGAGAAAGTCAAGTCCAGCTTGGTGTTGGTGTTGCAAAACCTAGGGTCAACTGCAGTATCTCATAAAATGGTGGGTGAAGCCTCTTTCTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

164

Amino Acids

17.91

Weight (kDa)

8.93

Isoelectric Point (pI)

65.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000528)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G49650
fragaria_vesca FvH4_1g18770 FvH4_1g18770 FvH4_7g34230
malus_domestica MD01G1046900.v1.1 MD15G1305400.v1.1 MD16G1282300.v1.1
prunus_persica Prupe.6G211700_v2.0.a1 Prupe.6G211700_v2.0.a1
pyrus_communis pycom01g07280 pycom15g26860 pycom16g25190 pycom16g25200
rosa_chinensis RchiOBHm_Chr1g0351151 RchiOBHm_Chr2g0109641 RchiOBHm_Chr4g0386971 RchiOBHm_Chr4g0413031 RchiOBHm_Chr4g0429541
rosa_laevigata RLG00000007037 RLG00000009264 RLG00000009427 RLG00000015442 RLG00000017752 RLG00000017990 RLG00000022570 RLG00000028427
rosa_multiflora Rmu_sc0000031.1_g000013 Rmu_sc0000332.1_g000058 Rmu_sc0000346.1_g000014 Rmu_sc0000698.1_g000147 Rmu_sc0001152.1_g000047 Rmu_sc0001494.1_g000003 Rmu_sc0002254.1_g000001 Rmu_sc0002531.1_g000001 Rmu_sc0002717.1_g000016 Rmu_sc0002717.1_g000017 Rmu_sc0003220.1_g000024 Rmu_sc0005016.1_g000007 Rmu_sc0005608.1_g000020 Rmu_sc0010686.1_g000003 Rmu_sc0011012.1_g000011 Rmu_sc0021503.1_g000001
rosa_roxburghii Rroxscaffold_2G00082300 Rroxscaffold_2G00099190 Rroxscaffold_2G00129660 Rroxscaffold_2G00134070 Rroxscaffold_3G00236170 Rroxscaffold_5G00346460 Rroxscaffold_7G00156600 Rroxscaffold_7G00205430
rosa_rugosa Rorug01G0267800 Rorug02G0020700 Rorug02G0020700 Rorug02G0161500 Rorug02G0384900 Rorug05G0567000
rosa_samantha Rh1AG062400 Rh1AG132200 Rh1AG231500 Rh1CG126100 Rh1CG184600 Rh1CG215600 Rh1CG237400 Rh2AG213700 Rh2BG068400 Rh2BG224100 Rh2BG239600 Rh2CG069600 Rh2CG216000 Rh2CG585300 Rh2DG067600 Rh2DG219200 Rh4AG177200 Rh5AG509600 Rh5BG290500 Rh5BG328900 Rh5DG300300 Rh5DG340100 Rh6BG103200 Rh7DG421500
rosa_wichuraiana Rw1G006030 Rw1G006580 Rw2G006320 Rw5G004390 Rw5G029130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 275
AccB1I GGYRCC 1 cut(s) 123
AccBSI CCGCTC 1 cut(s) 234
AciI CCGC 2 cut(s) 86, 234
AcsI RAATTY 2 cut(s) 115, 395
AcuI CTGAAG 1 cut(s) 243
AfeI AGCGCT 1 cut(s) 326
AgsI TTSAA 1 cut(s) 385
AluBI AGCT 2 cut(s) 215, 420
AluI AGCT 2 cut(s) 215, 420
Alw26I GTCTC 2 cut(s) 207, 339
Aor51HI AGCGCT 1 cut(s) 326
ApeKI GCWGC 4 cut(s) 88, 91, 184, 327
ApoI RAATTY 2 cut(s) 115, 395
AspA2I CCTAGG 1 cut(s) 442
AspLEI GCGC 1 cut(s) 327
AspS9I GGNCC 1 cut(s) 42
AsuHPI GGTGA 1 cut(s) 488
AvaII GGWCC 1 cut(s) 42
AvrII CCTAGG 1 cut(s) 442
BaeI ACNNNNGTAYC 2 cut(s) 441, 474
BanI GGYRCC 1 cut(s) 123
BbvI GCAGC 4 cut(s) 75, 78, 196, 314
BcgI CGANNNNNNTGC 2 cut(s) 70, 104
BcoDI GTCTC 2 cut(s) 207, 339
BfaI CTAG 4 cut(s) 72, 102, 167, 443
BfmI CTRYAG 2 cut(s) 282, 453
BfoI RGCGCY 1 cut(s) 328
BisI GCNGC 4 cut(s) 89, 92, 185, 328
BlnI CCTAGG 1 cut(s) 442
BlsI GCNGC 4 cut(s) 90, 93, 186, 329
Bme18I GGWCC 1 cut(s) 42
BmgT120I GGNCC 1 cut(s) 42
BmiI GGNNCC 1 cut(s) 125
BmrI ACTGGG 1 cut(s) 280
BmuI ACTGGG 1 cut(s) 280
BpmI CTGGAG 1 cut(s) 422
BsaJI CCNNGG 2 cut(s) 18, 442
Bse118I RCCGGY 1 cut(s) 337
Bse1I ACTGG 2 cut(s) 45, 275
BseDI CCNNGG 2 cut(s) 18, 442
BseNI ACTGG 2 cut(s) 45, 275
BseRI GAGGAG 3 cut(s) 7, 122, 162
BseXI GCAGC 4 cut(s) 75, 78, 196, 314
Bsh1285I CGRYCG 1 cut(s) 342
BshNI GGYRCC 1 cut(s) 123
BsiEI CGRYCG 1 cut(s) 342
BsiSI CCGG 1 cut(s) 338
BslFI GGGAC 1 cut(s) 251
BsmAI GTCTC 2 cut(s) 207, 339
BsmBI CGTCTC 1 cut(s) 339
BsmFI GGGAC 1 cut(s) 251
BspACI CCGC 2 cut(s) 86, 234
BspLI GGNNCC 1 cut(s) 125
BspMAI CTGCAG 2 cut(s) 286, 457
BspT107I GGYRCC 1 cut(s) 123
BsrBI CCGCTC 1 cut(s) 234
BsrFI RCCGGY 1 cut(s) 337
BsrI ACTGG 2 cut(s) 45, 275
BssAI RCCGGY 1 cut(s) 337
BssECI CCNNGG 2 cut(s) 18, 442
BssT1I CCWWGG 1 cut(s) 442
Bst4CI ACNGT 1 cut(s) 392
BstDEI CTNAG 1 cut(s) 196
BstH2I RGCGCY 1 cut(s) 328
BstHHI GCGC 1 cut(s) 327
BstMAI GTCTC 2 cut(s) 207, 339
BstMCI CGRYCG 1 cut(s) 342
BstSFI CTRYAG 2 cut(s) 282, 453
BstV1I GCAGC 4 cut(s) 75, 78, 196, 314
BtsI GCAGTG 1 cut(s) 279
BtsIMutI CAGTG 1 cut(s) 279
CfoI GCGC 1 cut(s) 327
Cfr10I RCCGGY 1 cut(s) 337
Cfr13I GGNCC 1 cut(s) 42
CviJI RGCY 6 cut(s) 23, 105, 215, 257, 420, 482
CviKI_1 RGCY 6 cut(s) 23, 105, 215, 257, 420, 482
DdeI CTNAG 1 cut(s) 196
DrdI GACNNNNNNGTC 1 cut(s) 275
DseDI GACNNNNNNGTC 1 cut(s) 275
Eco130I CCWWGG 1 cut(s) 442
Eco47I GGWCC 1 cut(s) 42
Eco47III AGCGCT 1 cut(s) 326
Eco57I CTGAAG 1 cut(s) 243
EcoT14I CCWWGG 1 cut(s) 442
ErhI CCWWGG 1 cut(s) 442
Esp3I CGTCTC 1 cut(s) 339
FaiI YATR 1 cut(s) 465
FalI AAGNNNNNCTT 2 cut(s) 404, 436
FaqI GGGAC 1 cut(s) 251
FauI CCCGC 1 cut(s) 227
Fnu4HI GCNGC 4 cut(s) 89, 92, 185, 328
Fsp4HI GCNGC 4 cut(s) 89, 92, 185, 328
FspBI CTAG 4 cut(s) 72, 102, 167, 443
GlaI GCGC 1 cut(s) 326
GluI GCNGC 4 cut(s) 89, 92, 185, 328
GsuI CTGGAG 1 cut(s) 422
HaeII RGCGCY 1 cut(s) 328
HapII CCGG 1 cut(s) 338
HhaI GCGC 1 cut(s) 327
Hin6I GCGC 1 cut(s) 325
HinP1I GCGC 1 cut(s) 325
HincII GTYRAC 1 cut(s) 450
HindII GTYRAC 1 cut(s) 450
HinfI GANTC 5 cut(s) 207, 242, 297, 308, 332
HpaII CCGG 1 cut(s) 338
HphI GGTGA 1 cut(s) 488
Hpy166II GTNNAC 1 cut(s) 450
Hpy188I TCNGA 2 cut(s) 262, 344
Hpy188III TCNNGA 2 cut(s) 204, 401
Hpy8I GTNNAC 1 cut(s) 450
HpyAV CCTTC 1 cut(s) 60
HpyCH4III ACNGT 1 cut(s) 392
HpyCH4V TGCA 4 cut(s) 226, 284, 436, 455
HpyF3I CTNAG 1 cut(s) 196
HspAI GCGC 1 cut(s) 325
LpnPI CCDG 6 cut(s) 58, 256, 270, 351, 386, 430
Lsp1109I GCAGC 4 cut(s) 75, 78, 196, 314
MaeI CTAG 4 cut(s) 72, 102, 167, 443
MaeIII GTNAC 2 cut(s) 9, 277
MbiI CCGCTC 1 cut(s) 234
MboII GAAGA 1 cut(s) 397
MluCI AATT 2 cut(s) 115, 395
MlyI GAGTC 2 cut(s) 302, 341
MmeI TCCRAC 1 cut(s) 322
MseI TTAA 2 cut(s) 356, 493
MspA1I CMGCKG 1 cut(s) 88
MspI CCGG 1 cut(s) 338
NlaIV GGNNCC 1 cut(s) 125
NmeAIII GCCGAG 1 cut(s) 196
NmuCI GTSAC 1 cut(s) 277
PcsI WCGNNNNNNNCGW 2 cut(s) 26, 151
PfeI GAWTC 3 cut(s) 207, 242, 297
PflFI GACNNNGTC 1 cut(s) 40
PkrI GCNGC 4 cut(s) 90, 93, 186, 329
PleI GAGTC 2 cut(s) 302, 340
PpsI GAGTC 2 cut(s) 302, 340
PspN4I GGNNCC 1 cut(s) 125
PspPI GGNCC 1 cut(s) 42
PstI CTGCAG 2 cut(s) 286, 457
PsyI GACNNNGTC 1 cut(s) 40
SaqAI TTAA 2 cut(s) 356, 493
SatI GCNGC 4 cut(s) 89, 92, 185, 328
Sau96I GGNCC 1 cut(s) 42
SchI GAGTC 2 cut(s) 302, 341
SetI ASST 4 cut(s) 217, 279, 422, 444
SfcI CTRYAG 2 cut(s) 282, 453
SinI GGWCC 1 cut(s) 42
Sse9I AATT 2 cut(s) 115, 395
SsiI CCGC 2 cut(s) 86, 234
SspMI CTAG 4 cut(s) 72, 102, 167, 443
StyI CCWWGG 1 cut(s) 442
TaaI ACNGT 1 cut(s) 392
TaqI TCGA 4 cut(s) 35, 145, 205, 300
TasI AATT 2 cut(s) 115, 395
TfiI GAWTC 3 cut(s) 207, 242, 297
Tru1I TTAA 2 cut(s) 356, 493
Tru9I TTAA 2 cut(s) 356, 493
TscAI CASTG 1 cut(s) 286
TseFI GTSAC 1 cut(s) 277
TseI GCWGC 4 cut(s) 88, 91, 184, 327
Tsp45I GTSAC 1 cut(s) 277
TspDTI ATGAA 1 cut(s) 42
TspRI CASTG 1 cut(s) 286
Tth111I GACNNNGTC 1 cut(s) 40
VpaK11BI GGWCC 1 cut(s) 42
XapI RAATTY 2 cut(s) 115, 395
XcmI CCANNNNNNNNNTGG 1 cut(s) 424
XmaJI CCTAGG 1 cut(s) 442
XspI CTAG 4 cut(s) 72, 102, 167, 443
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.