Rroxscaffold_2G00099190

GPCR-type G protein

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Forward (+)
20749698 .. 20754145
4448 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00099190.1

Sequence Viewer

Length: 237 bp
ATGATCATGTCATCATCCTCATGTGGACGGACTTGCGTCAAATGGCGGCGGCAAGTAGAGAAAATTGATATCAAAAACATGGAAGCAGAGGTGCAATCATTAGAAGAGCTTTCAAAGCAGCTATTTCTGGAAATATATGAGCTTCATCAAGTGAAGGAGGTTGCTGCTTACTCGTACATGGAGAGGTCATTTGTAAAATCTACATGGCAATGCATGTTCAATCTACGGTGTGTATAA

Protein Analysis

78

Amino Acids

9.3

Weight (kDa)

7.65

Isoelectric Point (pI)

59.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000528)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G49650
fragaria_vesca FvH4_1g18770 FvH4_1g18770 FvH4_7g34230
malus_domestica MD01G1046900.v1.1 MD15G1305400.v1.1 MD16G1282300.v1.1
prunus_persica Prupe.6G211700_v2.0.a1 Prupe.6G211700_v2.0.a1
pyrus_communis pycom01g07280 pycom15g26860 pycom16g25190 pycom16g25200
rosa_chinensis RchiOBHm_Chr1g0351151 RchiOBHm_Chr2g0109641 RchiOBHm_Chr4g0386971 RchiOBHm_Chr4g0413031 RchiOBHm_Chr4g0429541
rosa_laevigata RLG00000007037 RLG00000009264 RLG00000009427 RLG00000015442 RLG00000017752 RLG00000017990 RLG00000022570 RLG00000028427
rosa_multiflora Rmu_sc0000031.1_g000013 Rmu_sc0000332.1_g000058 Rmu_sc0000346.1_g000014 Rmu_sc0000698.1_g000147 Rmu_sc0001152.1_g000047 Rmu_sc0001494.1_g000003 Rmu_sc0002254.1_g000001 Rmu_sc0002531.1_g000001 Rmu_sc0002717.1_g000016 Rmu_sc0002717.1_g000017 Rmu_sc0003220.1_g000024 Rmu_sc0005016.1_g000007 Rmu_sc0005608.1_g000020 Rmu_sc0010686.1_g000003 Rmu_sc0011012.1_g000011 Rmu_sc0021503.1_g000001
rosa_roxburghii Rroxscaffold_2G00082300 Rroxscaffold_2G00099190 Rroxscaffold_2G00129660 Rroxscaffold_2G00134070 Rroxscaffold_3G00236170 Rroxscaffold_5G00346460 Rroxscaffold_7G00156600 Rroxscaffold_7G00205430
rosa_rugosa Rorug01G0267800 Rorug02G0020700 Rorug02G0020700 Rorug02G0161500 Rorug02G0384900 Rorug05G0567000
rosa_samantha Rh1AG062400 Rh1AG132200 Rh1AG231500 Rh1CG126100 Rh1CG184600 Rh1CG215600 Rh1CG237400 Rh2AG213700 Rh2BG068400 Rh2BG224100 Rh2BG239600 Rh2CG069600 Rh2CG216000 Rh2CG585300 Rh2DG067600 Rh2DG219200 Rh4AG177200 Rh5AG509600 Rh5BG290500 Rh5BG328900 Rh5DG300300 Rh5DG340100 Rh6BG103200 Rh7DG421500
rosa_wichuraiana Rw1G006030 Rw1G006580 Rw2G006320 Rw5G004390 Rw5G029130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 46, 49
AfaI GTAC 1 cut(s) 176
AgsI TTSAA 2 cut(s) 114, 220
AluBI AGCT 3 cut(s) 109, 121, 142
AluI AGCT 3 cut(s) 109, 121, 142
ApeKI GCWGC 2 cut(s) 118, 164
BbvI GCAGC 2 cut(s) 130, 151
BclI TGATCA 1 cut(s) 3
BisI GCNGC 4 cut(s) 47, 50, 119, 165
BlsI GCNGC 4 cut(s) 48, 51, 120, 166
BoxI GACNNNNGTC 1 cut(s) 35
Bse3DI GCAATG 1 cut(s) 215
BseGI GGATG 1 cut(s) 14
BseMI GCAATG 1 cut(s) 215
BseXI GCAGC 2 cut(s) 130, 151
Bsp143I GATC 1 cut(s) 3
BspACI CCGC 2 cut(s) 46, 49
BspQI GCTCTTC 1 cut(s) 99
BsrDI GCAATG 1 cut(s) 215
BssMI GATC 1 cut(s) 3
Bst4CI ACNGT 1 cut(s) 228
Bst6I CTCTTC 1 cut(s) 99
BstF5I GGATG 1 cut(s) 14
BstKTI GATC 1 cut(s) 6
BstMBI GATC 1 cut(s) 3
BstMWI GCNNNNNNNGC 1 cut(s) 115
BstNSI RCATGY 1 cut(s) 217
BstPAI GACNNNNGTC 1 cut(s) 35
BstV1I GCAGC 2 cut(s) 130, 151
BtsCI GGATG 1 cut(s) 14
CseI GACGC 1 cut(s) 25
Csp6I GTAC 1 cut(s) 175
CviAII CATG 6 cut(s) 7, 21, 79, 178, 204, 214
CviJI RGCY 3 cut(s) 109, 121, 142
CviKI_1 RGCY 3 cut(s) 109, 121, 142
CviQI GTAC 1 cut(s) 175
DpnI GATC 1 cut(s) 5
DpnII GATC 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 99
EarI CTCTTC 1 cut(s) 99
Eco32I GATATC 1 cut(s) 70
EcoRV GATATC 1 cut(s) 70
EcoT22I ATGCAT 1 cut(s) 215
FaeI CATG 6 cut(s) 10, 24, 82, 181, 207, 217
FaiI YATR 9 cut(s) 8, 22, 80, 136, 138, 179, 205, 215, 235
FatI CATG 6 cut(s) 6, 20, 78, 177, 203, 213
FbaI TGATCA 1 cut(s) 3
Fnu4HI GCNGC 4 cut(s) 47, 50, 119, 165
Fsp4HI GCNGC 4 cut(s) 47, 50, 119, 165
GluI GCNGC 4 cut(s) 47, 50, 119, 165
HgaI GACGC 1 cut(s) 25
Hin1II CATG 6 cut(s) 10, 24, 82, 181, 207, 217
Hpy166II GTNNAC 1 cut(s) 26
Hpy188III TCNNGA 1 cut(s) 128
Hpy8I GTNNAC 1 cut(s) 26
HpyAV CCTTC 1 cut(s) 148
HpyCH4III ACNGT 1 cut(s) 228
HpyCH4V TGCA 2 cut(s) 94, 213
HpyF10VI GCNNNNNNNGC 1 cut(s) 115
Hsp92II CATG 6 cut(s) 10, 24, 82, 181, 207, 217
Ksp22I TGATCA 1 cut(s) 3
Kzo9I GATC 1 cut(s) 3
LguI GCTCTTC 1 cut(s) 99
LpnPI CCDG 1 cut(s) 113
Lsp1109I GCAGC 2 cut(s) 130, 151
MalI GATC 1 cut(s) 5
MboI GATC 1 cut(s) 3
MboII GAAGA 1 cut(s) 116
MluCI AATT 1 cut(s) 63
MnlI CCTC 4 cut(s) 28, 82, 151, 177
Mph1103I ATGCAT 1 cut(s) 215
MslI CAYNNNNRTG 2 cut(s) 19, 208
MwoI GCNNNNNNNGC 1 cut(s) 115
NdeII GATC 1 cut(s) 3
NlaIII CATG 6 cut(s) 10, 24, 82, 181, 207, 217
NsiI ATGCAT 1 cut(s) 215
NspI RCATGY 1 cut(s) 217
PciSI GCTCTTC 1 cut(s) 99
PkrI GCNGC 4 cut(s) 48, 51, 120, 166
PshAI GACNNNNGTC 1 cut(s) 35
RsaI GTAC 1 cut(s) 176
RsaNI GTAC 1 cut(s) 175
RseI CAYNNNNRTG 2 cut(s) 19, 208
SapI GCTCTTC 1 cut(s) 99
SatI GCNGC 4 cut(s) 47, 50, 119, 165
Sau3AI GATC 1 cut(s) 3
SetI ASST 6 cut(s) 93, 111, 123, 144, 162, 188
SmiMI CAYNNNNRTG 2 cut(s) 19, 208
Sse9I AATT 1 cut(s) 63
SsiI CCGC 2 cut(s) 46, 49
TaaI ACNGT 1 cut(s) 228
TasI AATT 1 cut(s) 63
TauI GCSGC 2 cut(s) 49, 52
TseI GCWGC 2 cut(s) 118, 164
TspDTI ATGAA 1 cut(s) 134
TspGWI ACGGA 1 cut(s) 43
XceI RCATGY 1 cut(s) 217
Zsp2I ATGCAT 1 cut(s) 215
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.