Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0000528

Physical Location & Seq

Genomic Coordinates Forward (+)

44487577 .. 44558899

Gene Structure 71323 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG177200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

ATGATCATATCGTCATCCTCATGTGGACGGACTACTTGTGTCAAATGGTGGCGGCAAGCAGAGAAGATTGAGGTGCAATCGTTAGAAGAGCTTCCAAAGCAGCTATTCCTGGAAATATATGAGCTTTCTCAAGCAAAGGATGTCAACACAAAATGCATATCGTCCGTGATCTCTGGGGTTGTTCATGGTCTCAATGCAACTGTGTTTGCGTATGGTTCTACGGGAAGTTTGCATACAATATTTGATCTCATAAAAAAGGACAAGAGCTCTGATGAATTTGAAGTTACCTGCTCCTATCTTGAGGTTATCTATGATTTGCTTGAAAAGTCATCCGGCCATTTGGAACTCAGAGAGGATCCAGAGCAAGGAATCATTGTTGCTGGCCTCAGGTGTATAAAGGTTCAGTCAGCTGATAAGATCCTTGAACTCTTGAACGTGGGGAACTGCCGACGGAAAACTGAAAGCATGGAGGCTAATGCAACATCTTCTCGGAGCACCACATCACGTGCGCAGCATATCCAATCTCCTACCTTTTCATTCACCACCGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000070 GO:0000226 GO:0000278 GO:0000280 GO:0000819 GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005871 GO:0005875 GO:0005929 GO:0006928 GO:0006996 GO:0007010 GO:0007017 GO:0007018 GO:0007019 GO:0007049 GO:0007059 GO:0008150 GO:0008574 GO:0009987 GO:0010938 GO:0015630 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022402 GO:0022411 GO:0030030 GO:0031109 GO:0031122 GO:0032984 GO:0032991 GO:0042623 GO:0042995 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043624 GO:0043933 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0044782 GO:0048285 GO:0051261 GO:0051276 GO:0060404 GO:0061523 GO:0070462 GO:0071840 GO:0097435 GO:0098813 GO:0120025 GO:0120036 GO:0140014 GO:1903008 GO:1903047 GO:1990939

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kinesin

Protein Analysis

183

Amino Acids

20.33

Weight (kDa)

5.84

Isoelectric Point (pI)

49.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Kinesin	PF00225	77 - 166	4.9e-19	Kinesin motor domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000528)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49650
fragaria_vesca	FvH4_1g18770 FvH4_1g18770 FvH4_7g34230
malus_domestica	MD01G1046900.v1.1 MD15G1305400.v1.1 MD16G1282300.v1.1
prunus_persica	Prupe.6G211700_v2.0.a1 Prupe.6G211700_v2.0.a1
pyrus_communis	pycom01g07280 pycom15g26860 pycom16g25190 pycom16g25200
rosa_chinensis	RchiOBHm_Chr1g0351151 RchiOBHm_Chr2g0109641 RchiOBHm_Chr4g0386971 RchiOBHm_Chr4g0413031 RchiOBHm_Chr4g0429541
rosa_laevigata	RLG00000007037 RLG00000009264 RLG00000009427 RLG00000015442 RLG00000017752 RLG00000017990 RLG00000022570 RLG00000028427
rosa_multiflora	Rmu_sc0000031.1_g000013 Rmu_sc0000332.1_g000058 Rmu_sc0000346.1_g000014 Rmu_sc0000698.1_g000147 Rmu_sc0001152.1_g000047 Rmu_sc0001494.1_g000003 Rmu_sc0002254.1_g000001 Rmu_sc0002531.1_g000001 Rmu_sc0002717.1_g000016 Rmu_sc0002717.1_g000017 Rmu_sc0003220.1_g000024 Rmu_sc0005016.1_g000007 Rmu_sc0005608.1_g000020 Rmu_sc0010686.1_g000003 Rmu_sc0011012.1_g000011 Rmu_sc0021503.1_g000001
rosa_roxburghii	Rroxscaffold_2G00082300 Rroxscaffold_2G00099190 Rroxscaffold_2G00129660 Rroxscaffold_2G00134070 Rroxscaffold_3G00236170 Rroxscaffold_5G00346460 Rroxscaffold_7G00156600 Rroxscaffold_7G00205430
rosa_rugosa	Rorug01G0267800 Rorug02G0020700 Rorug02G0020700 Rorug02G0161500 Rorug02G0384900 Rorug05G0567000
rosa_samantha	Rh1AG062400 Rh1AG132200 Rh1AG231500 Rh1CG126100 Rh1CG184600 Rh1CG215600 Rh1CG237400 Rh2AG213700 Rh2BG068400 Rh2BG224100 Rh2BG239600 Rh2CG069600 Rh2CG216000 Rh2CG585300 Rh2DG067600 Rh2DG219200 Rh4AG177200 Rh5AG509600 Rh5BG290500 Rh5BG328900 Rh5DG300300 Rh5DG340100 Rh6BG103200 Rh7DG421500
rosa_wichuraiana	Rw1G006030 Rw1G006580 Rw2G006320 Rw5G004390 Rw5G029130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	510
Acc36I	ACCTGC	1 cut(s)	296
AciI	CCGC	2 cut(s)	52, 546
AclWI	GGATC	3 cut(s)	350, 363, 412
AcoI	YGGCCR	1 cut(s)	334
AcsI	RAATTY	1 cut(s)	275
AcvI	CACGTG	1 cut(s)	506
AfiI	CCNNNNNNNGG	1 cut(s)	365
AgsI	TTSAA	4 cut(s)	281, 323, 425, 433
AjnI	CCWGG	1 cut(s)	108
AluBI	AGCT	5 cut(s)	91, 103, 124, 267, 410
AluI	AGCT	5 cut(s)	91, 103, 124, 267, 410
Alw21I	GWGCWC	2 cut(s)	269, 497
Alw26I	GTCTC	1 cut(s)	194
AlwI	GGATC	3 cut(s)	350, 363, 412
AoxI	GGCC	2 cut(s)	334, 382
ApeKI	GCWGC	2 cut(s)	100, 511
ApoI	RAATTY	1 cut(s)	275
Asp700I	GAANNNNTTC	1 cut(s)	90
AspLEI	GCGC	1 cut(s)	511
AsuHPI	GGTGA	1 cut(s)	532
AxyI	CCTNAGG	1 cut(s)	386
BamHI	GGATCC	1 cut(s)	355
BanII	GRGCYC	1 cut(s)	269
BarI	GAAGNNNNNNTAC	2 cut(s)	217, 249
BbrPI	CACGTG	1 cut(s)	506
Bbv12I	GWGCWC	2 cut(s)	269, 497
BbvI	GCAGC	2 cut(s)	112, 523
BciT130I	CCWGG	1 cut(s)	110
BclI	TGATCA	1 cut(s)	3
BcoDI	GTCTC	1 cut(s)	194
BfuAI	ACCTGC	1 cut(s)	296
BisI	GCNGC	3 cut(s)	53, 101, 512
BlsI	GCNGC	3 cut(s)	54, 102, 513
Bme1390I	CCNGG	1 cut(s)	110
BmiI	GGNNCC	1 cut(s)	357
BmrFI	CCNGG	1 cut(s)	110
BpuEI	CTTGAG	2 cut(s)	114, 320
BsaAI	YACGTR	1 cut(s)	506
BsaI	GGTCTC	1 cut(s)	194
Bsc4I	CCNNNNNNNGG	1 cut(s)	365
Bse21I	CCTNAGG	1 cut(s)	386
BseBI	CCWGG	1 cut(s)	110
BseGI	GGATG	3 cut(s)	14, 145, 329
BseLI	CCNNNNNNNGG	1 cut(s)	365
BseMII	CTCAG	2 cut(s)	361, 400
BseXI	GCAGC	2 cut(s)	112, 523
BshFI	GGCC	2 cut(s)	336, 384
BsiHKAI	GWGCWC	2 cut(s)	269, 497
BsiSI	CCGG	1 cut(s)	333
BslI	CCNNNNNNNGG	1 cut(s)	365
BsmAI	GTCTC	1 cut(s)	194
BsnI	GGCC	2 cut(s)	336, 384
Bso31I	GGTCTC	1 cut(s)	194
Bsp1286I	GDGCHC	2 cut(s)	269, 497
Bsp143I	GATC	5 cut(s)	3, 168, 244, 355, 417
BspACI	CCGC	2 cut(s)	52, 546
BspANI	GGCC	2 cut(s)	336, 384
BspCNI	CTCAG	2 cut(s)	360, 399
BspLI	GGNNCC	1 cut(s)	357
BspMI	ACCTGC	1 cut(s)	296
BspPI	GGATC	3 cut(s)	350, 363, 412
BspQI	GCTCTTC	1 cut(s)	81
BspTNI	GGTCTC	1 cut(s)	194
BssMI	GATC	5 cut(s)	3, 168, 244, 355, 417
Bst2UI	CCWGG	1 cut(s)	110
Bst4CI	ACNGT	1 cut(s)	202
Bst6I	CTCTTC	1 cut(s)	81
BstBAI	YACGTR	1 cut(s)	506
BstC8I	GCNNGC	2 cut(s)	57, 382
BstDEI	CTNAG	2 cut(s)	347, 386
BstF5I	GGATG	3 cut(s)	14, 145, 329
BstHHI	GCGC	1 cut(s)	511
BstKTI	GATC	5 cut(s)	6, 171, 247, 358, 420
BstMAI	GTCTC	1 cut(s)	194
BstMBI	GATC	5 cut(s)	3, 168, 244, 355, 417
BstMWI	GCNNNNNNNGC	1 cut(s)	97
BstNI	CCWGG	1 cut(s)	110
BstSCI	CCNGG	1 cut(s)	108
BstV1I	GCAGC	2 cut(s)	112, 523
BstX2I	RGATCY	2 cut(s)	355, 417
BstYI	RGATCY	2 cut(s)	355, 417
Bsu36I	CCTNAGG	1 cut(s)	386
BsuRI	GGCC	2 cut(s)	336, 384
BtsCI	GGATG	3 cut(s)	14, 145, 329
BveI	ACCTGC	1 cut(s)	296
Cac8I	GCNNGC	2 cut(s)	57, 382
CfoI	GCGC	1 cut(s)	511
CviAII	CATG	4 cut(s)	21, 185, 466, 549
CviJI	RGCY	8 cut(s)	91, 103, 124, 267, 336, 384, 410, 473
CviKI_1	RGCY	8 cut(s)	91, 103, 124, 267, 336, 384, 410, 473
DdeI	CTNAG	2 cut(s)	347, 386
DpnI	GATC	5 cut(s)	5, 170, 246, 357, 419
DpnII	GATC	5 cut(s)	3, 168, 244, 355, 417
EaeI	YGGCCR	1 cut(s)	334
Eam1104I	CTCTTC	1 cut(s)	81
EarI	CTCTTC	1 cut(s)	81
Ecl136II	GAGCTC	1 cut(s)	267
Eco24I	GRGCYC	1 cut(s)	269
Eco31I	GGTCTC	1 cut(s)	194
Eco53kI	GAGCTC	1 cut(s)	267
Eco72I	CACGTG	1 cut(s)	506
Eco81I	CCTNAGG	1 cut(s)	386
EcoICRI	GAGCTC	1 cut(s)	267
EcoRII	CCWGG	1 cut(s)	108
EcoT22I	ATGCAT	1 cut(s)	158
EcoT38I	GRGCYC	1 cut(s)	269
FaeI	CATG	4 cut(s)	24, 188, 469, 552
FatI	CATG	4 cut(s)	20, 184, 465, 548
FbaI	TGATCA	1 cut(s)	3
Fnu4HI	GCNGC	3 cut(s)	53, 101, 512
FokI	GGATG	2 cut(s)	152, 316
FriOI	GRGCYC	1 cut(s)	269
Fsp4HI	GCNGC	3 cut(s)	53, 101, 512
FspI	TGCGCA	1 cut(s)	510
GlaI	GCGC	1 cut(s)	510
GluI	GCNGC	3 cut(s)	53, 101, 512
HaeIII	GGCC	2 cut(s)	336, 384
HapII	CCGG	1 cut(s)	333
HhaI	GCGC	1 cut(s)	511
Hin1II	CATG	4 cut(s)	24, 188, 469, 552
Hin6I	GCGC	1 cut(s)	509
HinP1I	GCGC	1 cut(s)	509
HincII	GTYRAC	1 cut(s)	145
HindII	GTYRAC	1 cut(s)	145
HinfI	GANTC	1 cut(s)	369
HpaII	CCGG	1 cut(s)	333
HphI	GGTGA	1 cut(s)	532
Hpy166II	GTNNAC	2 cut(s)	26, 145
Hpy188I	TCNGA	3 cut(s)	271, 350, 492
Hpy188III	TCNNGA	3 cut(s)	299, 359, 430
Hpy8I	GTNNAC	2 cut(s)	26, 145
Hpy99I	CGWCG	1 cut(s)	453
HpyCH4III	ACNGT	1 cut(s)	202
HpyCH4IV	ACGT	2 cut(s)	435, 505
HpyCH4V	TGCA	5 cut(s)	76, 156, 197, 232, 479
HpyF10VI	GCNNNNNNNGC	1 cut(s)	97
HpyF3I	CTNAG	2 cut(s)	347, 386
HpySE526I	ACGT	2 cut(s)	435, 505
Hsp92II	CATG	4 cut(s)	24, 188, 469, 552
HspAI	GCGC	1 cut(s)	509
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	5 cut(s)	3, 168, 244, 355, 417
LguI	GCTCTTC	1 cut(s)	81
LmnI	GCTCC	2 cut(s)	296, 492
LpnPI	CCDG	8 cut(s)	95, 122, 159, 301, 346, 366, 372, 373
Lsp1109I	GCAGC	2 cut(s)	112, 523
MaeII	ACGT	2 cut(s)	435, 505
MaeIII	GTNAC	1 cut(s)	283
MalI	GATC	5 cut(s)	5, 170, 246, 357, 419
MboI	GATC	5 cut(s)	3, 168, 244, 355, 417
MboII	GAAGA	3 cut(s)	76, 98, 477
MflI	RGATCY	2 cut(s)	355, 417
MhlI	GDGCHC	2 cut(s)	269, 497
MluCI	AATT	1 cut(s)	275
MnlI	CCTC	6 cut(s)	28, 64, 295, 346, 395, 463
Mph1103I	ATGCAT	1 cut(s)	158
MroXI	GAANNNNTTC	1 cut(s)	90
MslI	CAYNNNNRTG	1 cut(s)	19
MspA1I	CMGCKG	1 cut(s)	410
MspI	CCGG	1 cut(s)	333
MspR9I	CCNGG	1 cut(s)	110
MvaI	CCWGG	1 cut(s)	110
MwoI	GCNNNNNNNGC	1 cut(s)	97
NdeII	GATC	5 cut(s)	3, 168, 244, 355, 417
NlaIII	CATG	4 cut(s)	24, 188, 469, 552
NlaIV	GGNNCC	1 cut(s)	357
NsbI	TGCGCA	1 cut(s)	510
NsiI	ATGCAT	1 cut(s)	158
PciSI	GCTCTTC	1 cut(s)	81
PdmI	GAANNNNTTC	1 cut(s)	90
PfeI	GAWTC	1 cut(s)	369
PfoI	TCCNGGA	1 cut(s)	108
PkrI	GCNGC	3 cut(s)	54, 102, 513
PmaCI	CACGTG	1 cut(s)	506
PmlI	CACGTG	1 cut(s)	506
Ppu21I	YACGTR	1 cut(s)	506
Psp124BI	GAGCTC	1 cut(s)	269
Psp6I	CCWGG	1 cut(s)	108
PspCI	CACGTG	1 cut(s)	506
PspGI	CCWGG	1 cut(s)	108
PspN4I	GGNNCC	1 cut(s)	357
PsuI	RGATCY	2 cut(s)	355, 417
PvuII	CAGCTG	1 cut(s)	410
RseI	CAYNNNNRTG	1 cut(s)	19
SacI	GAGCTC	1 cut(s)	269
SapI	GCTCTTC	1 cut(s)	81
SatI	GCNGC	3 cut(s)	53, 101, 512
Sau3AI	GATC	5 cut(s)	3, 168, 244, 355, 417
ScrFI	CCNGG	1 cut(s)	110
SduI	GDGCHC	2 cut(s)	269, 497
SmiMI	CAYNNNNRTG	1 cut(s)	19
SmlI	CTYRAG	2 cut(s)	129, 299
SmoI	CTYRAG	2 cut(s)	129, 299
Sse9I	AATT	1 cut(s)	275
SsiI	CCGC	2 cut(s)	52, 546
SspI	AATATT	1 cut(s)	240
SstI	GAGCTC	1 cut(s)	269
StyD4I	CCNGG	1 cut(s)	108
TaaI	ACNGT	1 cut(s)	202
TaiI	ACGT	2 cut(s)	438, 508
TasI	AATT	1 cut(s)	275
TauI	GCSGC	1 cut(s)	55
TfiI	GAWTC	1 cut(s)	369
TseI	GCWGC	2 cut(s)	100, 511
TspDTI	ATGAA	3 cut(s)	173, 288, 525
TspGWI	ACGGA	3 cut(s)	43, 154, 466
XapI	RAATTY	1 cut(s)	275
XmnI	GAANNNNTTC	1 cut(s)	90
Zsp2I	ATGCAT	1 cut(s)	158

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.